Literature DB >> 2161681

Rate constants for a mechanism including intermediates in the interconversion of ternary complexes by horse liver alcohol dehydrogenase.

V C Sekhar1, B V Plapp.   

Abstract

Transient kinetic data for partial reactions of alcohol dehydrogenase and simulations of progress curves have led to estimates of rate constants for the following mechanism, at pH 8.0 and 25 degrees C: E in equilibrium E-NAD+ in equilibrium *E-NAD+ in equilibrium E-NAD(+)-RCH2OH in equilibrium E-NAD+-RCH2O- in equilibrium *E-NADH-RCHO in equilibrium E-NADH-RCHO in equilibrium E-NADH in equilibrium E. Previous results show that the E-NAD+ complex isomerizes with a forward rate constant of 620 s-1 [Sekhar, V. C., & Plapp, B. V. (1988) Biochemistry 27, 5082-5088]. The enzyme-NAD(+)-alcohol complex has a pK value of 7.2 and loses a proton rapidly (greater than 1000 s-1). The transient oxidation of ethanol is 2-fold faster in D2O, and proton inventory results suggest that the transition state has a charge of -0.3 on the substrate oxygen. Rate constants for hydride ion transfer in the forward or reverse reactions were similar for short-chain aliphatic substrates (400-600 s-1). A small deuterium isotope effect for transient oxidation of longer chain alcohols is apparently due to the isomerization of the E-NAD+ complex. The transient reduction of aliphatic aldehydes showed no primary deuterium isotope effect; thus, an isomerization of the E-NADH-aldehyde complex is postulated, as isomerization of the E-NADH complex was too fast to be detected. The estimated microscopic rate constants show that the observed transient reactions are controlled by multiple steps.

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Year:  1990        PMID: 2161681     DOI: 10.1021/bi00470a005

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

1.  Atomic-resolution structures of horse liver alcohol dehydrogenase with NAD(+) and fluoroalcohols define strained Michaelis complexes.

Authors:  Bryce V Plapp; S Ramaswamy
Journal:  Biochemistry       Date:  2012-05-01       Impact factor: 3.162

2.  Origins of the high catalytic activity of human alcohol dehydrogenase 4 studied with horse liver A317C alcohol dehydrogenase.

Authors:  Timothy J Herdendorf; Bryce V Plapp
Journal:  Chem Biol Interact       Date:  2010-12-22       Impact factor: 5.192

3.  Contribution of buried distal amino acid residues in horse liver alcohol dehydrogenase to structure and catalysis.

Authors:  Karthik K Shanmuganatham; Rachel S Wallace; Ann Ting-I Lee; Bryce V Plapp
Journal:  Protein Sci       Date:  2018-01-25       Impact factor: 6.725

Review 4.  Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

Authors:  Paul F Fitzpatrick
Journal:  Biochim Biophys Acta       Date:  2014-10-30

5.  Effects of high pressure on solvent isotope effects of yeast alcohol dehydrogenase.

Authors:  D B Northrop; Y K Cho
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

6.  Inversion of substrate stereoselectivity of horse liver alcohol dehydrogenase by substitutions of Ser-48 and Phe-93.

Authors:  Keehyuk Kim; Bryce V Plapp
Journal:  Chem Biol Interact       Date:  2016-12-23       Impact factor: 5.192

7.  Anticorrelated motions as a driving force in enzyme catalysis: the dehydrogenase reaction.

Authors:  Jia Luo; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-26       Impact factor: 11.205

8.  On the role of Brønsted catalysis in Pseudomonas fluorescens mannitol 2-dehydrogenase.

Authors:  Mario Klimacek; Kathryn L Kavanagh; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2003-10-01       Impact factor: 3.857

Review 9.  Conformational changes and catalysis by alcohol dehydrogenase.

Authors:  Bryce V Plapp
Journal:  Arch Biochem Biophys       Date:  2009-07-05       Impact factor: 4.013

10.  Activity of yeast alcohol dehydrogenases on benzyl alcohols and benzaldehydes: characterization of ADH1 from Saccharomyces carlsbergensis and transition state analysis.

Authors:  Suresh Pal; Doo-Hong Park; Bryce V Plapp
Journal:  Chem Biol Interact       Date:  2008-11-05       Impact factor: 5.192

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