Literature DB >> 21616670

Mass spectrometry accelerates membrane protein analysis.

Jeffrey N Savas1, Benjamin D Stein, Christine C Wu, John R Yates.   

Abstract

Cellular membranes are composed of proteins and glyco- and phospholipids and play an indispensible role in maintaining cellular integrity and homeostasis, by physically restricting biochemical processes within cells and providing protection. Membrane proteins perform many essential functions, which include operating as transporters, adhesion-anchors, receptors, and enzymes. Recent advancements in proteomic mass spectrometry have resulted in substantial progress towards the determination of the plasma membrane (PM) proteome, resolution of membrane protein topology, establishment of numerous receptor protein complexes, identification of ligand-receptor pairs, and the elucidation of signaling networks originating at the PM. Here, we discuss the recent accelerated success of discovery-based proteomic pipelines for the establishment of a complete membrane proteome. 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21616670      PMCID: PMC3222592          DOI: 10.1016/j.tibs.2011.04.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  74 in total

1.  Structural characterization of an integral membrane protein in its natural lipid environment by oxidative methionine labeling and mass spectrometry.

Authors:  Yan Pan; Bradley B Stocks; Leonid Brown; Lars Konermann
Journal:  Anal Chem       Date:  2009-01-01       Impact factor: 6.986

2.  Global topology analysis of pancreatic zymogen granule membrane proteins.

Authors:  Xuequn Chen; Peter J Ulintz; Eric S Simon; John A Williams; Philip C Andrews
Journal:  Mol Cell Proteomics       Date:  2008-08-04       Impact factor: 5.911

3.  Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA.

Authors:  Vikas Chandra; Pengxiang Huang; Yoshitomo Hamuro; Srilatha Raghuram; Yongjun Wang; Thomas P Burris; Fraydoon Rastinejad
Journal:  Nature       Date:  2008-11-20       Impact factor: 49.962

4.  A transmembrane accessory subunit that modulates kainate-type glutamate receptors.

Authors:  Wei Zhang; Fannie St-Gelais; Chad P Grabner; Jonathan C Trinidad; Akio Sumioka; Megumi Morimoto-Tomita; Kwang S Kim; Christoph Straub; Alma L Burlingame; James R Howe; Susumu Tomita
Journal:  Neuron       Date:  2009-02-12       Impact factor: 17.173

5.  Protein profiling of plasma membranes defines aberrant signaling pathways in mantle cell lymphoma.

Authors:  Robert S Boyd; Rebekah Jukes-Jones; Renata Walewska; David Brown; Martin J S Dyer; Kelvin Cain
Journal:  Mol Cell Proteomics       Date:  2009-04-02       Impact factor: 5.911

6.  Comparisons of mass spectrometry compatible surfactants for global analysis of the mammalian brain proteome.

Authors:  Emily I Chen; Daniel McClatchy; Sung Kyu Park; John R Yates
Journal:  Anal Chem       Date:  2008-10-21       Impact factor: 6.986

7.  Enhancing identifications of lipid-embedded proteins by mass spectrometry for improved mapping of endothelial plasma membranes in vivo.

Authors:  Yan Li; Jingyi Yu; Yipeng Wang; Noelle M Griffin; Fred Long; Sabrina Shore; Phil Oh; Jan E Schnitzer
Journal:  Mol Cell Proteomics       Date:  2009-01-19       Impact factor: 5.911

8.  Proteomic studies of a single CNS synapse type: the parallel fiber/purkinje cell synapse.

Authors:  Fekrije Selimi; Ileana M Cristea; Elizabeth Heller; Brian T Chait; Nathaniel Heintz
Journal:  PLoS Biol       Date:  2009-04-14       Impact factor: 8.029

9.  Neurotransmitters drive combinatorial multistate postsynaptic density networks.

Authors:  Marcelo P Coba; Andrew J Pocklington; Mark O Collins; Maksym V Kopanitsa; Rachel T Uren; Sajani Swamy; Mike D R Croning; Jyoti S Choudhary; Seth G N Grant
Journal:  Sci Signal       Date:  2009-04-28       Impact factor: 8.192

10.  Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions.

Authors:  Nelson P Barrera; Shoshanna C Isaacson; Min Zhou; Vassiliy N Bavro; Alex Welch; Theresia A Schaedler; Markus A Seeger; Ricardo Núñez Miguel; Vladimir M Korkhov; Hendrik W van Veen; Henrietta Venter; Adrian R Walmsley; Christopher G Tate; Carol V Robinson
Journal:  Nat Methods       Date:  2009-07-05       Impact factor: 28.547

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  40 in total

1.  FLRT proteins are endogenous latrophilin ligands and regulate excitatory synapse development.

Authors:  Matthew L O'Sullivan; Joris de Wit; Jeffrey N Savas; Davide Comoletti; Stefanie Otto-Hitt; John R Yates; Anirvan Ghosh
Journal:  Neuron       Date:  2012-03-08       Impact factor: 17.173

2.  Ligand-based receptor identification on living cells and tissues using TRICEPS.

Authors:  Andreas P Frei; Hansjoerg Moest; Karel Novy; Bernd Wollscheid
Journal:  Nat Protoc       Date:  2013-06-13       Impact factor: 13.491

Review 3.  Stable isotope dilution mass spectrometry for membrane transporter quantitation.

Authors:  Vahid Farrokhi; Adam J McShane; Reza Nemati; Xudong Yao
Journal:  AAPS J       Date:  2013-10       Impact factor: 4.009

4.  Application guide for omics approaches to cell signaling.

Authors:  Zhong Yao; Julia Petschnigg; Robin Ketteler; Igor Stagljar
Journal:  Nat Chem Biol       Date:  2015-05-15       Impact factor: 15.040

5.  Direct identification of ligand-receptor interactions on living cells and tissues.

Authors:  Andreas P Frei; Ock-Youm Jeon; Samuel Kilcher; Hansjoerg Moest; Lisa M Henning; Christian Jost; Andreas Plückthun; Jason Mercer; Ruedi Aebersold; Erick M Carreira; Bernd Wollscheid
Journal:  Nat Biotechnol       Date:  2012-09-16       Impact factor: 54.908

6.  In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation.

Authors:  Margaret T Butko; Jeffrey N Savas; Beth Friedman; Claire Delahunty; Ford Ebner; John R Yates; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

Review 7.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

8.  Ecto-Fc MS identifies ligand-receptor interactions through extracellular domain Fc fusion protein baits and shotgun proteomic analysis.

Authors:  Jeffrey N Savas; Joris De Wit; Davide Comoletti; Roland Zemla; Anirvan Ghosh; John R Yates
Journal:  Nat Protoc       Date:  2014-08-07       Impact factor: 13.491

9.  Glycopeptide capture for cell surface proteomics.

Authors:  M C Gilbert Lee; Bingyun Sun
Journal:  J Vis Exp       Date:  2014-05-09       Impact factor: 1.355

Review 10.  Using X-ray Footprinting and Mass Spectrometry to Study the Structure and Function of Membrane Proteins.

Authors:  Sayan Gupta
Journal:  Protein Pept Lett       Date:  2019       Impact factor: 1.890

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