Literature DB >> 21614139

Deconvolution Estimation in Measurement Error Models: The R Package decon.

Xiao-Feng Wang1, Bin Wang.   

Abstract

Data from many scientific areas often come with measurement error. Density or distribution function estimation from contaminated data and nonparametric regression with errors-in-variables are two important topics in measurement error models. In this paper, we present a new software package decon for R, which contains a collection of functions that use the deconvolution kernel methods to deal with the measurement error problems. The functions allow the errors to be either homoscedastic or heteroscedastic. To make the deconvolution estimators computationally more efficient in R, we adapt the fast Fourier transform algorithm for density estimation with error-free data to the deconvolution kernel estimation. We discuss the practical selection of the smoothing parameter in deconvolution methods and illustrate the use of the package through both simulated and real examples.

Entities:  

Year:  2011        PMID: 21614139      PMCID: PMC3100171     

Source DB:  PubMed          Journal:  J Stat Softw        ISSN: 1548-7660            Impact factor:   6.440


  3 in total

1.  A Design-Adaptive Local Polynomial Estimator for the Errors-in-Variables Problem.

Authors:  Aurore Delaigle; Jianqing Fan; Raymond J Carroll
Journal:  J Am Stat Assoc       Date:  2009-03-01       Impact factor: 5.033

2.  Nonparametric Prediction in Measurement Error Models.

Authors:  Raymond J Carroll; Aurore Delaigle; Peter Hall
Journal:  J Am Stat Assoc       Date:  2009-09-01       Impact factor: 5.033

3.  Estimating smooth distribution function in the presence of heteroscedastic measurement errors.

Authors:  Xiao-Feng Wang; Zhaozhi Fan; Bin Wang
Journal:  Comput Stat Data Anal       Date:  2010-01-01       Impact factor: 1.681

  3 in total
  10 in total

1.  The effects of error magnitude and bandwidth selection for deconvolution with unknown error distribution.

Authors:  Xiao-Feng Wang; Deping Ye
Journal:  J Nonparametr Stat       Date:  2012-01-30       Impact factor: 1.231

2.  A generalized regression model for region of interest analysis of fMRI data.

Authors:  Xiao-Feng Wang; Zhiguo Jiang; Janis J Daly; Guang H Yue
Journal:  Neuroimage       Date:  2011-07-31       Impact factor: 6.556

3.  Normalizing bead-based microRNA expression data: a measurement error model-based approach.

Authors:  Bin Wang; Xiao-Feng Wang; Yaguang Xi
Journal:  Bioinformatics       Date:  2011-04-15       Impact factor: 6.937

4.  Regression models for group testing data with pool dilution effects.

Authors:  Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Biostatistics       Date:  2012-11-28       Impact factor: 5.899

5.  Bayesian Semiparametric Density Deconvolution in the Presence of Conditionally Heteroscedastic Measurement Errors.

Authors:  Abhra Sarkar; Bani K Mallick; John Staudenmayer; Debdeep Pati; Raymond J Carroll
Journal:  J Comput Graph Stat       Date:  2014-10-01       Impact factor: 2.302

6.  STRATOS guidance document on measurement error and misclassification of variables in observational epidemiology: Part 2-More complex methods of adjustment and advanced topics.

Authors:  Pamela A Shaw; Paul Gustafson; Raymond J Carroll; Veronika Deffner; Kevin W Dodd; Ruth H Keogh; Victor Kipnis; Janet A Tooze; Michael P Wallace; Helmut Küchenhoff; Laurence S Freedman
Journal:  Stat Med       Date:  2020-04-03       Impact factor: 2.373

7.  Conditional Density Estimation in Measurement Error Problems.

Authors:  Xiao-Feng Wang; Deping Ye
Journal:  J Multivar Anal       Date:  2015-01-01       Impact factor: 1.473

8.  Generalization of the normal-exponential model: exploration of a more accurate parametrisation for the signal distribution on Illumina BeadArrays.

Authors:  Sandra Plancade; Yves Rozenholc; Eiliv Lund
Journal:  BMC Bioinformatics       Date:  2012-12-11       Impact factor: 3.169

9.  Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression.

Authors:  Bin Wang; Shu-Guang Zhang; Xiao-Feng Wang; Ming Tan; Yaguang Xi
Journal:  PLoS One       Date:  2012-05-24       Impact factor: 3.240

10.  Figure-Ground Organization in Visual Cortex for Natural Scenes.

Authors:  Jonathan R Williford; Rüdiger von der Heydt
Journal:  eNeuro       Date:  2016-12-29
  10 in total

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