Literature DB >> 21610290

'Dicty dynamics': Dictyostelium motility as persistent random motion.

Liang Li1, Edward C Cox, Henrik Flyvbjerg.   

Abstract

We model the motility of Dictyostelium cells in a systematic data-driven manner. We deduce a minimal dynamical model that reproduces the statistical features of experimental trajectories. These are trajectories of the centroid of the cell perimeter, which is more sensitive to pseudopod activity than the usual tracking by centroid or nucleus. Our data account for cell individuality and dictate a model that extends the cell-type specific models recently derived for mammalian cells. Two generalized Langevin equations model stochastic periodic pseudopod motion parallel and orthogonal to the amoeba's direction of motion. This motion propels the amoeba with a random periodic left-right waddle in a direction that has a long persistence time. The model fully accounts for the statistics of the experimental trajectories, including velocity power spectra and auto-correlations, non-Gaussian velocity distributions, and multiplicative noise. Thus, we find neither need nor place in our data for an interpretation in terms of anomalous diffusion. The model faithfully captures cell individuality as different parameter values in the model, and serves as a basis for integrating the local mechanics of cell motion with our observed long-term behavior.

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Year:  2011        PMID: 21610290      PMCID: PMC3148805          DOI: 10.1088/1478-3975/8/4/046006

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  32 in total

1.  Power spectrum analysis with least-squares fitting: amplitude bias and its elimination, with application to optical tweezers and atomic force microscope cantilevers.

Authors:  Simon F Nørrelykke; Henrik Flyvbjerg
Journal:  Rev Sci Instrum       Date:  2010-07       Impact factor: 1.523

2.  Cell motility as persistent random motion: theories from experiments.

Authors:  David Selmeczi; Stephan Mosler; Peter H Hagedorn; Niels B Larsen; Henrik Flyvbjerg
Journal:  Biophys J       Date:  2005-06-10       Impact factor: 4.033

3.  Chemotaxis in shallow gradients is mediated independently of PtdIns 3-kinase by biased choices between random protrusions.

Authors:  Natalie Andrew; Robert H Insall
Journal:  Nat Cell Biol       Date:  2007-01-14       Impact factor: 28.824

4.  Self-propelled particles with fluctuating speed and direction of motion in two dimensions.

Authors:  Fernando Peruani; Luis G Morelli
Journal:  Phys Rev Lett       Date:  2007-07-06       Impact factor: 9.161

5.  The fundamental motor of the human neutrophil is not random: evidence for local non-Markov movement in neutrophils.

Authors:  R S Hartman; K Lau; W Chou; T D Coates
Journal:  Biophys J       Date:  1994-12       Impact factor: 4.033

6.  Harmonic oscillator in heat bath: exact simulation of time-lapse-recorded data and exact analytical benchmark statistics.

Authors:  Simon F Nørrelykke; Henrik Flyvbjerg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-04-04

7.  Kinetics of self-assembling microtubules: an "inverse problem" in biochemistry.

Authors:  H Flyvbjerg; E Jobs; S Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

8.  "Dynamic Morphology System": a method for quantitating changes in shape, pseudopod formation, and motion in normal and mutant amoebae of Dictyostelium discoideum.

Authors:  D R Soll; E Voss; B Varnum-Finney; D Wessels
Journal:  J Cell Biochem       Date:  1988-06       Impact factor: 4.429

9.  Actin-based propulsive forces and myosin-II-based contractile forces in migrating Dictyostelium cells.

Authors:  Yoshiaki Iwadate; Shigehiko Yumura
Journal:  J Cell Sci       Date:  2008-04-15       Impact factor: 5.285

10.  Myosin II is essential for the spatiotemporal organization of traction forces during cell motility.

Authors:  Ruedi Meili; Baldomero Alonso-Latorre; Juan C del Alamo; Richard A Firtel; Juan C Lasheras
Journal:  Mol Biol Cell       Date:  2009-12-02       Impact factor: 4.138

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  34 in total

1.  The effect of sampling rate on observed statistics in a correlated random walk.

Authors:  G Rosser; A G Fletcher; P K Maini; R E Baker
Journal:  J R Soc Interface       Date:  2013-06-05       Impact factor: 4.118

2.  Behavioral diversity in microbes and low-dimensional phenotypic spaces.

Authors:  David Jordan; Seppe Kuehn; Eleni Katifori; Stanislas Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

3.  Intracellular encoding of spatiotemporal guidance cues in a self-organizing signaling system for chemotaxis in Dictyostelium cells.

Authors:  Tatsuo Shibata; Masatoshi Nishikawa; Satomi Matsuoka; Masahiro Ueda
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

4.  Patterns of cell thickness oscillations during directional migration of Physarum polycephalum.

Authors:  Beatrice Rodiek; Seiji Takagi; Tetsuo Ueda; Marcus J B Hauser
Journal:  Eur Biophys J       Date:  2015-04-29       Impact factor: 1.733

5.  Characterization of anomalous movements of spherical living cells on a silicon dioxide glassy substrate.

Authors:  Myeonggu Son; Gyudo Lee; Jongsang Son; Seungyeop Choi; Youngho Kim; Sei-Young Lee; Young-Ro Yoon; Dae Sung Yoon; Sang Woo Lee
Journal:  Biomicrofluidics       Date:  2015-01-07       Impact factor: 2.800

6.  Migration of cells in a social context.

Authors:  Søren Vedel; Savaş Tay; Darius M Johnston; Henrik Bruus; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-18       Impact factor: 11.205

7.  Theoretical model for cell migration with gradient sensing and shape deformation.

Authors:  Tetsuya Hiraiwa; Akinori Baba; Tatsuo Shibata
Journal:  Eur Phys J E Soft Matter       Date:  2013-04-11       Impact factor: 1.890

Review 8.  Moving towards a paradigm: common mechanisms of chemotactic signaling in Dictyostelium and mammalian leukocytes.

Authors:  Yulia Artemenko; Thomas J Lampert; Peter N Devreotes
Journal:  Cell Mol Life Sci       Date:  2014-05-21       Impact factor: 9.261

9.  Collective regulation of cell motility using an accurate density-sensing system.

Authors:  Joseph d'Alessandro; Lauriane Mas; Laurence Aubry; Jean-Paul Rieu; Charlotte Rivière; Christophe Anjard
Journal:  J R Soc Interface       Date:  2018-03       Impact factor: 4.118

10.  A minimal computational model for three-dimensional cell migration.

Authors:  Yuansheng Cao; Elisabeth Ghabache; Yuchuan Miao; Cassandra Niman; Hiroyuki Hakozaki; Samara L Reck-Peterson; Peter N Devreotes; Wouter-Jan Rappel
Journal:  J R Soc Interface       Date:  2019-12-18       Impact factor: 4.118

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