Literature DB >> 8650204

Kinetics of self-assembling microtubules: an "inverse problem" in biochemistry.

H Flyvbjerg1, E Jobs, S Leibler.   

Abstract

Experimental time series for a nonequilibrium reaction may in some cases contain sufficient data to determine a unique kinetic model for the reaction by a systematic mathematical analysis. As an example, a kinetic model for the self-assembly of microtubules is derived here from turbidity time series for solutions in which microtubules assemble. The model may be seen as a generalization of Oosawa's classical nucleation-polymerization model. It reproduces the experimental data with a four-stage nucleation process and a critical nucleus of 15 monomers.

Mesh:

Year:  1996        PMID: 8650204      PMCID: PMC39173          DOI: 10.1073/pnas.93.12.5975

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Modulation of the dynamic instability of tubulin assembly by the microtubule-associated protein tau.

Authors:  D N Drechsel; A A Hyman; M H Cobb; M W Kirschner
Journal:  Mol Biol Cell       Date:  1992-10       Impact factor: 4.138

2.  A theory of linear and helical aggregations of macromolecules.

Authors:  F OOSAWA; M KASAI
Journal:  J Mol Biol       Date:  1962-01       Impact factor: 5.469

3.  Turbidimetric studies of the in vitro assembly and disassembly of porcine neurotubules.

Authors:  F Gaskin; C R Cantor; M L Shelanski
Journal:  J Mol Biol       Date:  1974-11-15       Impact factor: 5.469

4.  The kinetics of microtubule assembly. Evidence for a two-stage nucleation mechanism.

Authors:  W A Voter; H P Erickson
Journal:  J Biol Chem       Date:  1984-08-25       Impact factor: 5.157

5.  The kinetics of actin nucleation and polymerization.

Authors:  L S Tobacman; E D Korn
Journal:  J Biol Chem       Date:  1983-03-10       Impact factor: 5.157

6.  Role of GTP hydrolysis in microtubule dynamics: information from a slowly hydrolyzable analogue, GMPCPP.

Authors:  A A Hyman; S Salser; D N Drechsel; N Unwin; T J Mitchison
Journal:  Mol Biol Cell       Date:  1992-10       Impact factor: 4.138

7.  Kinetics of sickle hemoglobin polymerization. II. A double nucleation mechanism.

Authors:  F A Ferrone; J Hofrichter; W A Eaton
Journal:  J Mol Biol       Date:  1985-06-25       Impact factor: 5.469

8.  The role of subunit entropy in cooperative assembly. Nucleation of microtubules and other two-dimensional polymers.

Authors:  H P Erickson; D Pantaloni
Journal:  Biophys J       Date:  1981-05       Impact factor: 4.033

9.  Three-dimensional structural characterization of centrosomes from early Drosophila embryos.

Authors:  M Moritz; M B Braunfeld; J C Fung; J W Sedat; B M Alberts; D A Agard
Journal:  J Cell Biol       Date:  1995-09       Impact factor: 10.539

10.  gamma-tubulin is a minus end-specific microtubule binding protein.

Authors:  Q Li; H C Joshi
Journal:  J Cell Biol       Date:  1995-10       Impact factor: 10.539

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  42 in total

1.  Cytoplasmic dynein nucleates microtubules to organize them into radial arrays in vivo.

Authors:  Viacheslav Malikov; Anna Kashina; Vladimir Rodionov
Journal:  Mol Biol Cell       Date:  2004-03-26       Impact factor: 4.138

2.  Reverse engineering an amyloid aggregation pathway with dimensional analysis and scaling.

Authors:  J Bailey; K J Potter; C B Verchere; L Edelstein-Keshet; D Coombs
Journal:  Phys Biol       Date:  2011-11-25       Impact factor: 2.583

3.  Protein Polymerization into Fibrils from the Viewpoint of Nucleation Theory.

Authors:  Dimo Kashchiev
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

4.  The kinetic behavior of insulin fibrillation is determined by heterogeneous nucleation pathways.

Authors:  Fabio Librizzi; Christian Rischel
Journal:  Protein Sci       Date:  2005-12       Impact factor: 6.725

5.  Fiber-dependent amyloid formation as catalysis of an existing reaction pathway.

Authors:  Amy M Ruschak; Andrew D Miranker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

6.  Nucleation-dependent tau filament formation: the importance of dimerization and an estimation of elementary rate constants.

Authors:  Erin E Congdon; Sohee Kim; Jonathan Bonchak; Tanakorn Songrug; Anastasios Matzavinos; Jeff Kuret
Journal:  J Biol Chem       Date:  2008-03-21       Impact factor: 5.157

7.  Kinetic analysis of tubulin assembly in the presence of the microtubule-associated protein TOGp.

Authors:  Claude Bonfils; Nicole Bec; Benjamin Lacroix; Marie-Cécile Harricane; Christian Larroque
Journal:  J Biol Chem       Date:  2006-12-17       Impact factor: 5.157

8.  Irreversible gelation of thermally unfolded proteins: structural and mechanical properties of lysozyme aggregates.

Authors:  Samuele Raccosta; Mauro Manno; Donatella Bulone; Daniela Giacomazza; Valeria Militello; Vincenzo Martorana; Pier Luigi San Biagio
Journal:  Eur Biophys J       Date:  2009-07-01       Impact factor: 1.733

9.  The structure and assembly dynamics of plasmid actin AlfA imply a novel mechanism of DNA segregation.

Authors:  Jessica K Polka; Justin M Kollman; David A Agard; R Dyche Mullins
Journal:  J Bacteriol       Date:  2009-08-07       Impact factor: 3.490

10.  Model-based analysis of assembly kinetics for virus capsids or other spherical polymers.

Authors:  Dan Endres; Adam Zlotnick
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

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