Literature DB >> 23898201

Behavioral diversity in microbes and low-dimensional phenotypic spaces.

David Jordan1, Seppe Kuehn, Eleni Katifori, Stanislas Leibler.   

Abstract

Systematic studies of phenotypic diversity--required for understanding evolution--lag behind investigations of genetic diversity. Here we develop a quantitative approach to studying behavioral diversity, which we apply to swimming of the ciliate Tetrahymena. We measure the full-lifetime behavior of hundreds of individual organisms at high temporal resolution, over several generations and in diverse nutrient conditions. To characterize population diversity and temporal variability we introduce a unique statistical framework grounded in the notion of a phenotypic space of behaviors. We show that this space is effectively low dimensional with dimensions that correlate with a two-state "roaming and dwelling" model of swimming behavior. Temporal variability over the lifetime of an individual is correlated with the fraction of time spent roaming whereas diversity between individuals is correlated with the speed of roaming. Quantifying the dynamics of behavioral variation shows that behavior over the lifetime of an individual is strongly nonstationary. Analysis of behavioral dynamics between generations reveals complex patterns of behavioral heritability that point to the importance of considering correlations beyond mothers and daughters. Our description of a low-dimensional behavioral space should enable the systematic study of the evolutionary and ecological bases of phenotypic constraints. Future experimental and theoretical studies of behavioral diversity will have to account for the possibility of nonstationary and environmentally dependent behavioral dynamics that we observe.

Keywords:  behavioral variation in microbes; biological sciences; systems biology

Mesh:

Year:  2013        PMID: 23898201      PMCID: PMC3752258          DOI: 10.1073/pnas.1308282110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Growth rate and generation time of bacteria, with special reference to continuous culture.

Authors:  E O POWELL
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Authors:  J W Gamel; D E Axelrod
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6.  Theoretical Morphology of the Coiled Shell.

Authors:  D M Raup; A Michelson
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7.  Cell multiplication in Tetrahymena cultures after addition of particulate material.

Authors:  L Rasmussen; L Modeweg-Hansen
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8.  Robust single-particle tracking in live-cell time-lapse sequences.

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Authors:  Taejin L Min; Patrick J Mears; Lon M Chubiz; Christopher V Rao; Ido Golding; Yann R Chemla
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10.  The geometry of locomotive behavioral states in C. elegans.

Authors:  Thomas Gallagher; Theresa Bjorness; Robert Greene; Young-Jai You; Leon Avery
Journal:  PLoS One       Date:  2013-03-28       Impact factor: 3.240

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  15 in total

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Authors:  David T Fraebel; Harry Mickalide; Diane Schnitkey; Jason Merritt; Thomas E Kuhlman; Seppe Kuehn
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8.  The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog.

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9.  Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species.

Authors:  Ali Soleymani; Frank Pennekamp; Owen L Petchey; Robert Weibel
Journal:  PLoS One       Date:  2015-12-17       Impact factor: 3.240

10.  Heterogeneous CD8+ T cell migration in the lymph node in the absence of inflammation revealed by quantitative migration analysis.

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Journal:  PLoS Comput Biol       Date:  2015-02-18       Impact factor: 4.475

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