Literature DB >> 22596205

Systems metabolic engineering of microorganisms for natural and non-natural chemicals.

Jeong Wook Lee1, Dokyun Na, Jong Myoung Park, Joungmin Lee, Sol Choi, Sang Yup Lee.   

Abstract

Growing concerns over limited fossil resources and associated environmental problems are motivating the development of sustainable processes for the production of chemicals, fuels and materials from renewable resources. Metabolic engineering is a key enabling technology for transforming microorganisms into efficient cell factories for these compounds. Systems metabolic engineering, which incorporates the concepts and techniques of systems biology, synthetic biology and evolutionary engineering at the systems level, offers a conceptual and technological framework to speed the creation of new metabolic enzymes and pathways or the modification of existing pathways for the optimal production of desired products. Here we discuss the general strategies of systems metabolic engineering and examples of its application and offer insights as to when and how each of the different strategies should be used. Finally, we highlight the limitations and challenges to be overcome for the systems metabolic engineering of microorganisms at more advanced levels.

Mesh:

Substances:

Year:  2012        PMID: 22596205     DOI: 10.1038/nchembio.970

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  89 in total

1.  Model-driven engineering of RNA devices to quantitatively program gene expression.

Authors:  James M Carothers; Jonathan A Goler; Darmawi Juminaga; Jay D Keasling
Journal:  Science       Date:  2011-12-23       Impact factor: 47.728

Review 2.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

3.  The challenges of integrating multi-omic data sets.

Authors:  Bernhard Palsson; Karsten Zengler
Journal:  Nat Chem Biol       Date:  2010-11       Impact factor: 15.040

4.  Expanding metabolism for total biosynthesis of the nonnatural amino acid L-homoalanine.

Authors:  Kechun Zhang; Han Li; Kwang Myung Cho; James C Liao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-23       Impact factor: 11.205

5.  Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol.

Authors:  N N Nichols; B S Dien; R J Bothast
Journal:  Appl Microbiol Biotechnol       Date:  2001-07       Impact factor: 4.813

6.  Continuous control of the flow in biochemical pathways through 5' untranslated region sequence modifications in mRNA expressed from the broad-host-range promoter Pm.

Authors:  Rahmi Lale; Laila Berg; Friederike Stüttgen; Roman Netzer; Marit Stafsnes; Trygve Brautaset; Trond Erik Vee Aune; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2011-02-18       Impact factor: 4.792

7.  Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering.

Authors:  Mohammad A Asadollahi; Jérôme Maury; Kiran Raosaheb Patil; Michel Schalk; Anthony Clark; Jens Nielsen
Journal:  Metab Eng       Date:  2009-07-18       Impact factor: 9.783

8.  Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate.

Authors:  Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  Biotechnol Bioeng       Date:  2010-06-15       Impact factor: 4.530

9.  A genome-scale computational study of the interplay between transcriptional regulation and metabolism.

Authors:  Tomer Shlomi; Yariv Eisenberg; Roded Sharan; Eytan Ruppin
Journal:  Mol Syst Biol       Date:  2007-04-17       Impact factor: 11.429

10.  A co-fermentation strategy to consume sugar mixtures effectively.

Authors:  Mark A Eiteman; Sarah A Lee; Elliot Altman
Journal:  J Biol Eng       Date:  2008-02-27       Impact factor: 4.355

View more
  159 in total

Review 1.  Systems strategies for developing industrial microbial strains.

Authors:  Sang Yup Lee; Hyun Uk Kim
Journal:  Nat Biotechnol       Date:  2015-10       Impact factor: 54.908

2.  Predictable tuning of protein expression in bacteria.

Authors:  Mads T Bonde; Margit Pedersen; Michael S Klausen; Sheila I Jensen; Tune Wulff; Scott Harrison; Alex T Nielsen; Markus J Herrgård; Morten O A Sommer
Journal:  Nat Methods       Date:  2016-01-11       Impact factor: 28.547

3.  Regulation of hyaluronic acid molecular weight and titer by temperature in engineered Bacillus subtilis.

Authors:  Yingying Li; Guoqiang Li; Xin Zhao; Yuzhe Shao; Mengmeng Wu; Ting Ma
Journal:  3 Biotech       Date:  2019-05-21       Impact factor: 2.406

4.  Yeast Tolerance to Various Stresses Relies on the Trehalose-6P Synthase (Tps1) Protein, Not on Trehalose.

Authors:  Marjorie Petitjean; Marie-Ange Teste; Jean M François; Jean-Luc Parrou
Journal:  J Biol Chem       Date:  2015-05-01       Impact factor: 5.157

5.  Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.

Authors:  Chen Liao; Seung-Oh Seo; Venhar Celik; Huaiwei Liu; Wentao Kong; Yi Wang; Hans Blaschek; Yong-Su Jin; Ting Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

6.  High-yield chemical synthesis by reprogramming central metabolism.

Authors:  Vivian Y Yu; Michelle C Y Chang
Journal:  Nat Biotechnol       Date:  2016-11-08       Impact factor: 54.908

Review 7.  Recent advances in the applications of promoter engineering for the optimization of metabolite biosynthesis.

Authors:  Ning Xu; Liang Wei; Jun Liu
Journal:  World J Microbiol Biotechnol       Date:  2019-01-31       Impact factor: 3.312

8.  Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.

Authors:  Jonathan M Monk; Anna Koza; Miguel A Campodonico; Daniel Machado; Jose Miguel Seoane; Bernhard O Palsson; Markus J Herrgård; Adam M Feist
Journal:  Cell Syst       Date:  2016-09-22       Impact factor: 10.304

Review 9.  Protein engineering for metabolic engineering: current and next-generation tools.

Authors:  Ryan J Marcheschi; Luisa S Gronenberg; James C Liao
Journal:  Biotechnol J       Date:  2013-04-16       Impact factor: 4.677

10.  Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform.

Authors:  Maria Enquist-Newman; Ann Marie E Faust; Daniel D Bravo; Christine Nicole S Santos; Ryan M Raisner; Arthur Hanel; Preethi Sarvabhowman; Chi Le; Drew D Regitsky; Susan R Cooper; Lars Peereboom; Alana Clark; Yessica Martinez; Joshua Goldsmith; Min Y Cho; Paul D Donohoue; Lily Luo; Brigit Lamberson; Pramila Tamrakar; Edward J Kim; Jeffrey L Villari; Avinash Gill; Shital A Tripathi; Padma Karamchedu; Carlos J Paredes; Vineet Rajgarhia; Hans Kristian Kotlar; Richard B Bailey; Dennis J Miller; Nicholas L Ohler; Candace Swimmer; Yasuo Yoshikuni
Journal:  Nature       Date:  2013-12-01       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.