Literature DB >> 21599415

Minimum energy path to membrane pore formation and rupture.

Christina L Ting1, Daniel Appelö, Zhen-Gang Wang.   

Abstract

We combine dynamic self-consistent field theory with the string method to calculate the minimum energy path to membrane pore formation and rupture. In the regime where nucleation can occur on experimentally relevant time scales, the structure of the critical nucleus is between a solvophilic stalk and a locally thinned membrane. Classical nucleation theory fails to capture these molecular details and significantly overestimates the free energy barrier. Our results suggest that thermally nucleated rupture may be an important factor for the low rupture strains observed in lipid membranes.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21599415      PMCID: PMC3225126          DOI: 10.1103/PhysRevLett.106.168101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

1.  Crystallization of antimicrobial pores in membranes: magainin and protegrin.

Authors:  L Yang; T M Weiss; R I Lehrer; H W Huang
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

2.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

3.  Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations.

Authors:  T V Tolpekina; W K den Otter; W J Briels
Journal:  J Chem Phys       Date:  2004-12-15       Impact factor: 3.488

4.  Pore nucleation in mechanically stretched bilayer membranes.

Authors:  Zun-Jing Wang; Daan Frenkel
Journal:  J Chem Phys       Date:  2005-10-15       Impact factor: 3.488

5.  Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations.

Authors:  J Wohlert; W K den Otter; O Edholm; W J Briels
Journal:  J Chem Phys       Date:  2006-04-21       Impact factor: 3.488

6.  Pore formation and rupture in fluid bilayers.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-04

7.  Interactions of a charged nanoparticle with a lipid membrane: implications for gene delivery.

Authors:  Christina L Ting; Zhen-Gang Wang
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

8.  Viscoelastic relaxation of bilayer lipid membranes. Frequency-dependent tension and membrane viscosity.

Authors:  G E Crawford; J C Earnshaw
Journal:  Biophys J       Date:  1987-07       Impact factor: 4.033

9.  Tension-stabilized pores in giant vesicles: determination of pore size and pore line tension.

Authors:  D V Zhelev; D Needham
Journal:  Biochim Biophys Acta       Date:  1993-04-08

10.  Water permeability and mechanical strength of polyunsaturated lipid bilayers.

Authors:  K Olbrich; W Rawicz; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

View more
  8 in total

1.  Molecular pathways for defect annihilation in directed self-assembly.

Authors:  Su-Mi Hur; Vikram Thapar; Abelardo Ramírez-Hernández; Gurdaman Khaira; Tamar Segal-Peretz; Paulina A Rincon-Delgadillo; Weihua Li; Marcus Müller; Paul F Nealey; Juan J de Pablo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-29       Impact factor: 11.205

2.  Optically transparent polymer devices for in situ assessment of cell electroporation.

Authors:  Amit Kumar Majhi; Greeshma Thrivikraman; Bikramjit Basu; V Venkataraman
Journal:  Eur Biophys J       Date:  2014-12-13       Impact factor: 1.733

3.  Pulsatile Lipid Vesicles under Osmotic Stress.

Authors:  Morgan Chabanon; James C S Ho; Bo Liedberg; Atul N Parikh; Padmini Rangamani
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

4.  Calculating Transition Energy Barriers and Characterizing Activation States for Steps of Fusion.

Authors:  Rolf J Ryham; Thomas S Klotz; Lihan Yao; Fredric S Cohen
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

5.  The mechanobiology of actin cytoskeletal proteins during cell-cell fusion.

Authors:  Jing Cong; Bing Fang; Qian Wang; Yan Su; Tianqi Gu; Tianzhi Luo
Journal:  J R Soc Interface       Date:  2019-07-24       Impact factor: 4.118

6.  Free energy of hydrophilic and hydrophobic pores in lipid bilayers by free energy perturbation of a restraint.

Authors:  Mayank Dixit; Themis Lazaridis
Journal:  J Chem Phys       Date:  2020-08-07       Impact factor: 3.488

7.  Recurrent dynamics of rupture transitions of giant lipid vesicles at solid surfaces.

Authors:  Viviane N Ngassam; Wan-Chih Su; Douglas L Gettel; Yawen Deng; Zexu Yang; Neven Wang-Tomic; Varun P Sharma; Sowmya Purushothaman; Atul N Parikh
Journal:  Biophys J       Date:  2021-01-16       Impact factor: 4.033

8.  Topology mediates transport of nanoparticles in macromolecular networks.

Authors:  Xiaobin Dai; Xuanyu Zhang; Lijuan Gao; Ziyang Xu; Li-Tang Yan
Journal:  Nat Commun       Date:  2022-07-14       Impact factor: 17.694

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.