Literature DB >> 21754525

N,N-Dimethylpyridin-4-aminium 1-phenyl-cyclo-pentane-1-carboxyl-ate monohydrate.

Guangwen He, Srinivasulu Aitipamula, Pui Shan Chow, Reginald B H Tan.   

Abstract

The cation of the title salt, C(7)H(11)N(2) (+)·C(12)H(13)O(2) (-)·H(2)O, is planar (r.m.s. deviation = 0.0184 Å). In the crystal, the cation, anion and water mol-ecule are linked by O-H⋯O and N-H⋯O hydrogen bonds, forming a chain running along the a axis.

Entities:  

Year:  2011        PMID: 21754525      PMCID: PMC3089254          DOI: 10.1107/S1600536811015200

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 4-dimethyl­amino­pyridine, see: Ohms & Guth (1984 ▶). For the structure of 1-phenyl­cyclo­pentane-1-carb­oxy­lic acid, see: Margulis (1975 ▶). For recent mol­ecular co-crystals and salts of 4-dimethyl­amino­pyridine, see: Dastidar et al. (1993 ▶). For recent mol­ecular co-crystals of 1-phenyl­cyclo­pentane-1-carb­oxy­lic acid, see: He et al. (2010 ▶, 2011 ▶). For comparative bond dimensions in pyridinium carboxyl­ates, see: Kumar et al. (2009 ▶).

Experimental

Crystal data

C7H11N2C12H13O2 −·H2O M = 330.42 Monoclinic, a = 6.1666 (12) Å b = 18.206 (4) Å c = 15.702 (3) Å β = 97.33 (3)° V = 1748.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 110 K 0.44 × 0.33 × 0.22 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.964, T max = 0.982 12519 measured reflections 4233 independent reflections 3945 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.139 S = 1.13 4233 reflections 231 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015200/ng5153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015200/ng5153Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015200/ng5153Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H11N2+·C12H13O2·H2OF(000) = 712
Mr = 330.42Dx = 1.255 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5283 reflections
a = 6.1666 (12) Åθ = 2.2–31.0°
b = 18.206 (4) ŵ = 0.09 mm1
c = 15.702 (3) ÅT = 110 K
β = 97.33 (3)°Block, colorless
V = 1748.4 (6) Å30.44 × 0.33 × 0.22 mm
Z = 4
Bruker APEXII diffractometer4233 independent reflections
Radiation source: fine-focus sealed tube3945 reflections with I > 2σ(I)
graphiteRint = 0.017
ω scansθmax = 28.3°, θmin = 2.9°
Absorption correction: multi-scan (Blessing, 1995)h = −8→8
Tmin = 0.964, Tmax = 0.982k = −21→23
12519 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0729P)2 + 0.4696P] where P = (Fo2 + 2Fc2)/3
4233 reflections(Δ/σ)max < 0.001
231 parametersΔρmax = 0.23 e Å3
3 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.46197 (17)0.37281 (6)0.40367 (7)0.0322 (2)
H30.337 (3)0.3496 (12)0.3979 (14)0.062 (6)*
H60.561 (3)0.3390 (10)0.4004 (13)0.053 (6)*
C1−0.0970 (2)0.21395 (7)0.17867 (8)0.0237 (3)
H1−0.23490.19360.18640.028*
C20.3042 (2)0.27379 (7)0.15451 (8)0.0270 (3)
H20.44190.29410.14630.032*
C3−0.06856 (19)0.25206 (7)0.38099 (7)0.0206 (2)
C4−0.0648 (2)0.24247 (7)0.09887 (8)0.0261 (3)
H4−0.18020.24100.05260.031*
C50.2731 (2)0.24498 (7)0.23453 (8)0.0232 (3)
H50.38970.24580.28030.028*
C60.03032 (19)0.18630 (7)0.33520 (7)0.0206 (2)
C70.07135 (19)0.21492 (7)0.24761 (7)0.0203 (2)
C80.2357 (2)0.15696 (7)0.39066 (8)0.0256 (3)
H8A0.32310.12560.35640.031*
H8B0.32830.19780.41600.031*
C90.1353 (2)0.27300 (7)0.08674 (8)0.0277 (3)
H90.15670.29320.03260.033*
C10−0.1238 (2)0.11900 (7)0.33039 (8)0.0269 (3)
H10A−0.27860.13460.31930.032*
H10B−0.09280.08520.28410.032*
C11−0.0764 (3)0.08142 (8)0.41878 (9)0.0361 (3)
H11A−0.19330.09280.45450.043*
H11B−0.06800.02750.41200.043*
C120.1442 (3)0.11201 (9)0.46066 (9)0.0367 (3)
H12A0.12350.14360.51040.044*
H12B0.24500.07150.48070.044*
O1−0.26922 (15)0.25454 (6)0.38244 (6)0.0300 (2)
O20.06558 (15)0.30076 (5)0.41263 (6)0.0302 (2)
C130.1993 (2)0.49016 (7)0.62159 (8)0.0232 (3)
H130.32390.52080.63430.028*
C140.0210 (2)0.49587 (7)0.67079 (8)0.0227 (3)
C15−0.1584 (2)0.40174 (7)0.57900 (9)0.0275 (3)
H15−0.28220.37140.56290.033*
C16−0.1610 (2)0.44957 (7)0.64561 (9)0.0270 (3)
H16−0.28560.45190.67540.032*
C170.1905 (2)0.44045 (7)0.55616 (8)0.0247 (3)
H170.31110.43670.52430.030*
C180.2073 (2)0.59162 (8)0.76179 (9)0.0325 (3)
H18A0.24610.61660.71050.049*
H18B0.33310.56340.78860.049*
H18C0.16580.62820.80260.049*
C19−0.1612 (3)0.54665 (9)0.78639 (10)0.0383 (3)
H19A−0.19880.49730.80470.057*
H19B−0.28700.56800.75030.057*
H19C−0.12240.57770.83700.057*
N10.01572 (18)0.39651 (6)0.53538 (7)0.0254 (2)
N20.02411 (19)0.54214 (6)0.73743 (7)0.0274 (2)
H70.012 (4)0.3632 (12)0.4892 (15)0.056 (6)*
U11U22U33U12U13U23
O30.0281 (5)0.0291 (5)0.0406 (6)−0.0046 (4)0.0092 (4)−0.0074 (4)
C10.0227 (5)0.0241 (6)0.0235 (6)0.0010 (4)0.0000 (4)−0.0030 (5)
C20.0290 (6)0.0267 (6)0.0260 (6)−0.0025 (5)0.0063 (5)−0.0011 (5)
C30.0219 (5)0.0241 (6)0.0159 (5)−0.0011 (4)0.0024 (4)−0.0003 (4)
C40.0306 (6)0.0261 (6)0.0201 (6)0.0041 (5)−0.0024 (5)−0.0032 (5)
C50.0229 (6)0.0243 (6)0.0217 (6)−0.0005 (4)0.0005 (4)−0.0030 (4)
C60.0204 (5)0.0221 (6)0.0190 (5)−0.0020 (4)0.0017 (4)−0.0025 (4)
C70.0219 (5)0.0204 (6)0.0183 (5)0.0020 (4)0.0016 (4)−0.0030 (4)
C80.0268 (6)0.0257 (6)0.0235 (6)0.0022 (5)0.0003 (5)0.0010 (5)
C90.0371 (7)0.0256 (6)0.0206 (6)0.0020 (5)0.0048 (5)0.0000 (5)
C100.0309 (6)0.0238 (6)0.0260 (6)−0.0077 (5)0.0036 (5)−0.0043 (5)
C110.0483 (8)0.0301 (7)0.0302 (7)−0.0111 (6)0.0066 (6)0.0017 (6)
C120.0434 (8)0.0365 (8)0.0287 (7)−0.0050 (6)−0.0014 (6)0.0089 (6)
O10.0213 (4)0.0349 (5)0.0343 (5)−0.0002 (4)0.0053 (4)−0.0061 (4)
O20.0251 (5)0.0301 (5)0.0357 (5)−0.0041 (4)0.0049 (4)−0.0140 (4)
C130.0235 (6)0.0208 (6)0.0249 (6)−0.0005 (4)0.0013 (4)0.0003 (4)
C140.0267 (6)0.0184 (6)0.0226 (6)0.0023 (4)0.0014 (4)0.0014 (4)
C150.0284 (6)0.0225 (6)0.0305 (6)−0.0025 (5)0.0000 (5)0.0005 (5)
C160.0266 (6)0.0251 (6)0.0298 (6)−0.0017 (5)0.0052 (5)0.0000 (5)
C170.0259 (6)0.0241 (6)0.0239 (6)0.0043 (5)0.0029 (4)0.0015 (5)
C180.0406 (8)0.0270 (7)0.0299 (7)−0.0053 (6)0.0042 (5)−0.0072 (5)
C190.0465 (9)0.0346 (8)0.0371 (8)0.0005 (6)0.0184 (6)−0.0083 (6)
N10.0298 (5)0.0209 (5)0.0243 (5)0.0017 (4)−0.0005 (4)−0.0022 (4)
N20.0318 (6)0.0246 (6)0.0266 (5)0.0000 (4)0.0061 (4)−0.0044 (4)
O3—H30.874 (15)C11—C121.538 (2)
O3—H60.872 (15)C11—H11A0.9900
C1—C41.3937 (18)C11—H11B0.9900
C1—C71.4010 (16)C12—H12A0.9900
C1—H10.9500C12—H12B0.9900
C2—C91.3908 (19)C13—C171.3649 (18)
C2—C51.3970 (18)C13—C141.4262 (17)
C2—H20.9500C13—H130.9500
C3—O11.2414 (15)C14—N21.3416 (16)
C3—O21.2696 (15)C14—C161.4189 (17)
C3—C61.5603 (16)C15—N11.3488 (18)
C4—C91.3885 (19)C15—C161.3625 (19)
C4—H40.9500C15—H150.9500
C5—C71.3981 (17)C16—H160.9500
C5—H50.9500C17—N11.3485 (17)
C6—C71.5218 (16)C17—H170.9500
C6—C81.5382 (17)C18—N21.4571 (18)
C6—C101.5465 (16)C18—H18A0.9800
C8—C121.5345 (19)C18—H18B0.9800
C8—H8A0.9900C18—H18C0.9800
C8—H8B0.9900C19—N21.4587 (18)
C9—H90.9500C19—H19A0.9800
C10—C111.5414 (19)C19—H19B0.9800
C10—H10A0.9900C19—H19C0.9800
C10—H10B0.9900N1—H70.94 (2)
H3—O3—H6105.5 (18)C12—C11—H11B110.5
C4—C1—C7120.90 (12)C10—C11—H11B110.5
C4—C1—H1119.5H11A—C11—H11B108.7
C7—C1—H1119.5C8—C12—C11105.83 (11)
C9—C2—C5120.61 (12)C8—C12—H12A110.6
C9—C2—H2119.7C11—C12—H12A110.6
C5—C2—H2119.7C8—C12—H12B110.6
O1—C3—O2124.66 (11)C11—C12—H12B110.6
O1—C3—C6119.03 (10)H12A—C12—H12B108.7
O2—C3—C6116.28 (10)C17—C13—C14119.77 (12)
C9—C4—C1120.23 (12)C17—C13—H13120.1
C9—C4—H4119.9C14—C13—H13120.1
C1—C4—H4119.9N2—C14—C16121.50 (12)
C2—C5—C7120.38 (12)N2—C14—C13122.20 (12)
C2—C5—H5119.8C16—C14—C13116.30 (11)
C7—C5—H5119.8N1—C15—C16121.53 (12)
C7—C6—C8114.25 (10)N1—C15—H15119.2
C7—C6—C10113.53 (10)C16—C15—H15119.2
C8—C6—C10102.06 (10)C15—C16—C14120.47 (12)
C7—C6—C3105.88 (9)C15—C16—H16119.8
C8—C6—C3110.33 (10)C14—C16—H16119.8
C10—C6—C3110.89 (10)N1—C17—C13121.96 (12)
C5—C7—C1118.48 (11)N1—C17—H17119.0
C5—C7—C6121.36 (10)C13—C17—H17119.0
C1—C7—C6120.11 (10)N2—C18—H18A109.5
C12—C8—C6103.84 (10)N2—C18—H18B109.5
C12—C8—H8A111.0H18A—C18—H18B109.5
C6—C8—H8A111.0N2—C18—H18C109.5
C12—C8—H8B111.0H18A—C18—H18C109.5
C6—C8—H8B111.0H18B—C18—H18C109.5
H8A—C8—H8B109.0N2—C19—H19A109.5
C4—C9—C2119.40 (12)N2—C19—H19B109.5
C4—C9—H9120.3H19A—C19—H19B109.5
C2—C9—H9120.3N2—C19—H19C109.5
C11—C10—C6105.25 (10)H19A—C19—H19C109.5
C11—C10—H10A110.7H19B—C19—H19C109.5
C6—C10—H10A110.7C17—N1—C15119.93 (11)
C11—C10—H10B110.7C17—N1—H7120.4 (13)
C6—C10—H10B110.7C15—N1—H7119.7 (13)
H10A—C10—H10B108.8C14—N2—C18121.77 (11)
C12—C11—C10106.26 (11)C14—N2—C19120.81 (12)
C12—C11—H11A110.5C18—N2—C19117.38 (11)
C10—C11—H11A110.5
D—H···AD—HH···AD···AD—H···A
N1—H7···O20.94 (2)1.72 (2)2.6458 (15)168 (2)
O3—H3···O20.87 (2)1.93 (2)2.7935 (14)167 (2)
O3—H6···O1i0.87 (2)1.90 (2)2.7634 (15)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H7⋯O20.94 (2)1.72 (2)2.6458 (15)168 (2)
O3—H3⋯O20.87 (2)1.93 (2)2.7935 (14)167 (2)
O3—H6⋯O1i0.87 (2)1.90 (2)2.7634 (15)169 (2)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Pyrimidin-2-amine-1-phenyl-cyclo-pentane-1-carb-oxy-lic acid (1/1).

Authors:  Guangwen He; Srinivasulu Aitipamula; Pui Shan Chow; Reginald B H Tan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02

4.  2-Amino-pyridinium 1-phenyl-cyclo-propane-1-carboxyl-ate.

Authors:  Guangwen He; Srinivasulu Aitipamula; Pui Shan Chow; Reginald B H Tan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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