Literature DB >> 21589586

4,4'-Bipyridine-2-(carb-oxy-methyl-sulfan-yl)pyridine-3-carb-oxy-lic acid (1/1).

Xian-Rong Jiang1, Xiao-Juan Wang, Yun-Long Feng.   

Abstract

In the title co-crystal, C(10)H(8)N(2C(8)H(7)NO(4)S, the formate group is coplanar with the pyridyl ring of the acid [dihedral angle = 6.2 (7)°], while the carb-oxy-methyl-sulfanyl group makes a C-S-C-C torsion angle of 70.2 (1)° with the pyridine ring. The dihedral angle between the pyridyl rings of the 4,4'-bipyridine mol-ecule is 27.4 (1)°. The acid and the 4,4'-bipyridine mol-ecules are involved in hydrogen bonding via carb-oxy-lic O and pyridyl N atoms. The structure is further consolidated by inter-molecular C-H⋯O hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2010        PMID: 21589586      PMCID: PMC3011421          DOI: 10.1107/S1600536810048385

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Wang & Feng (2010 ▶); Zhu et al. (2002 ▶); Smith & Sagatys (2003 ▶).

Experimental

Crystal data

C10H8N2·C8H7NO4S M = 369.40 Monoclinic, a = 9.3684 (3) Å b = 10.3044 (3) Å c = 18.2264 (5) Å β = 106.494 (2)° V = 1687.09 (9) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.41 × 0.25 × 0.10 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.935, T max = 0.978 24834 measured reflections 3927 independent reflections 3106 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.144 S = 1.08 3927 reflections 241 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048385/pv2357sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048385/pv2357Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·C8H7NO4SF(000) = 768
Mr = 369.40Dx = 1.454 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7490 reflections
a = 9.3684 (3) Åθ = 2.3–27.7°
b = 10.3044 (3) ŵ = 0.22 mm1
c = 18.2264 (5) ÅT = 296 K
β = 106.494 (2)°Block, colourless
V = 1687.09 (9) Å30.41 × 0.25 × 0.10 mm
Z = 4
Bruker APEXII area-detector diffractometer3927 independent reflections
Radiation source: fine-focus sealed tube3106 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 27.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.935, Tmax = 0.978k = −13→13
24834 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
3927 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.27 e Å3
2 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.58161 (5)0.38154 (4)0.14705 (2)0.04516 (16)
O10.80222 (16)0.58013 (13)−0.00541 (8)0.0686 (4)
H1B0.837 (2)0.6539 (17)0.0143 (12)0.082*
O20.72352 (16)0.57771 (12)0.09792 (7)0.0640 (4)
O30.70285 (16)0.13228 (12)0.22294 (9)0.0705 (4)
H3B0.740 (2)0.0553 (17)0.2308 (13)0.085*
O40.49171 (15)0.02161 (13)0.18621 (8)0.0722 (4)
N10.52552 (13)0.21214 (12)0.03258 (7)0.0418 (3)
C10.58945 (15)0.32661 (14)0.05633 (7)0.0368 (3)
C20.65886 (15)0.40173 (13)0.01174 (8)0.0382 (3)
C30.65803 (17)0.35450 (15)−0.05940 (9)0.0439 (4)
H3A0.70200.4022−0.09050.053*
C40.59198 (17)0.23668 (16)−0.08426 (8)0.0472 (4)
H4A0.59060.2035−0.13190.057*
C50.52829 (17)0.17006 (15)−0.03640 (9)0.0453 (4)
H5A0.48420.0904−0.05300.054*
C60.73076 (16)0.52758 (14)0.03952 (8)0.0424 (3)
C70.48104 (17)0.25100 (16)0.17466 (8)0.0467 (4)
H7A0.45080.27940.21870.056*
H7B0.39090.23670.13330.056*
C80.5588 (2)0.12241 (15)0.19413 (9)0.0475 (4)
N2−0.08632 (19)−0.19297 (15)0.05293 (10)0.0635 (4)
N30.16287 (17)0.40694 (14)0.23065 (9)0.0560 (4)
C90.0353 (2)−0.18397 (18)0.11218 (13)0.0652 (5)
H9A0.0884−0.25950.12960.078*
C10−0.1626 (2)−0.0845 (2)0.03031 (12)0.0622 (5)
H10A−0.2482−0.0888−0.01080.075*
C110.08680 (19)−0.07012 (17)0.14907 (10)0.0551 (4)
H11A0.1739−0.06900.18930.066*
C12−0.12119 (17)0.03452 (18)0.06467 (9)0.0529 (4)
H12A−0.17870.10790.04720.064*
C130.00740 (16)0.04348 (15)0.12563 (9)0.0415 (3)
C140.05830 (16)0.16981 (15)0.16269 (8)0.0401 (3)
C150.14430 (19)0.17679 (16)0.23814 (9)0.0500 (4)
H15A0.16830.10180.26750.060*
C160.02397 (18)0.28557 (16)0.12271 (10)0.0513 (4)
H16A−0.03520.28590.07220.062*
C170.0788 (2)0.39998 (17)0.15887 (11)0.0584 (5)
H17A0.05540.47680.13130.070*
C180.19387 (19)0.29589 (19)0.26931 (9)0.0558 (4)
H18A0.25200.29900.32000.067*
U11U22U33U12U13U23
S10.0619 (3)0.0338 (2)0.0371 (2)0.00022 (15)0.00974 (18)−0.00146 (13)
O10.0904 (9)0.0499 (7)0.0768 (9)−0.0340 (7)0.0421 (7)−0.0215 (7)
O20.0957 (9)0.0453 (7)0.0505 (7)−0.0223 (6)0.0201 (6)−0.0118 (5)
O30.0620 (8)0.0418 (7)0.0978 (11)0.0049 (5)0.0069 (7)0.0182 (7)
O40.0866 (9)0.0450 (7)0.0837 (9)−0.0169 (6)0.0219 (7)−0.0054 (6)
N10.0473 (7)0.0326 (6)0.0419 (6)−0.0030 (5)0.0066 (5)−0.0008 (5)
C10.0382 (7)0.0311 (7)0.0360 (7)0.0029 (5)0.0021 (5)0.0002 (5)
C20.0377 (7)0.0323 (7)0.0402 (7)0.0007 (5)0.0038 (6)−0.0013 (6)
C30.0503 (8)0.0385 (8)0.0432 (8)−0.0029 (6)0.0136 (7)−0.0021 (6)
C40.0578 (9)0.0420 (9)0.0402 (7)−0.0048 (7)0.0113 (6)−0.0091 (6)
C50.0513 (8)0.0337 (8)0.0446 (8)−0.0048 (6)0.0035 (6)−0.0057 (6)
C60.0441 (7)0.0346 (7)0.0441 (8)−0.0022 (6)0.0053 (6)−0.0012 (6)
C70.0519 (8)0.0475 (9)0.0423 (7)0.0013 (7)0.0159 (6)0.0000 (7)
C80.0648 (10)0.0396 (9)0.0400 (8)−0.0031 (7)0.0180 (7)0.0010 (6)
N20.0739 (10)0.0459 (9)0.0798 (11)−0.0249 (7)0.0365 (8)−0.0189 (8)
N30.0591 (8)0.0457 (8)0.0636 (9)−0.0107 (6)0.0180 (7)−0.0158 (7)
C90.0743 (12)0.0388 (9)0.0883 (14)−0.0044 (8)0.0326 (11)−0.0061 (9)
C100.0542 (10)0.0619 (12)0.0694 (12)−0.0208 (8)0.0157 (9)−0.0180 (10)
C110.0557 (10)0.0412 (9)0.0656 (11)−0.0013 (7)0.0129 (8)−0.0010 (7)
C120.0454 (8)0.0477 (9)0.0611 (10)−0.0055 (7)0.0077 (7)−0.0079 (8)
C130.0412 (7)0.0378 (8)0.0466 (7)−0.0066 (6)0.0141 (6)−0.0018 (6)
C140.0396 (7)0.0361 (8)0.0445 (7)−0.0038 (6)0.0114 (6)−0.0025 (6)
C150.0582 (9)0.0453 (9)0.0437 (8)−0.0038 (7)0.0097 (7)0.0010 (7)
C160.0546 (9)0.0411 (9)0.0513 (8)−0.0014 (7)0.0035 (7)0.0008 (7)
C170.0675 (11)0.0355 (9)0.0692 (11)−0.0010 (7)0.0143 (9)0.0013 (8)
C180.0603 (10)0.0592 (11)0.0447 (8)−0.0069 (8)0.0098 (7)−0.0095 (8)
S1—C11.7688 (14)N2—C101.328 (3)
S1—C71.7943 (17)N2—C91.332 (3)
O1—C61.3127 (19)N3—C171.324 (2)
O1—H1B0.864 (16)N3—C181.332 (2)
O2—C61.2023 (19)C9—C111.370 (2)
O3—C81.305 (2)C9—H9A0.9300
O3—H3B0.861 (16)C10—C121.382 (2)
O4—C81.2015 (19)C10—H10A0.9300
N1—C51.3373 (19)C11—C131.388 (2)
N1—C11.3379 (18)C11—H11A0.9300
C1—C21.408 (2)C12—C131.391 (2)
C2—C31.383 (2)C12—H12A0.9300
C2—C61.4827 (19)C13—C141.482 (2)
C3—C41.379 (2)C14—C151.384 (2)
C3—H3A0.9300C14—C161.387 (2)
C4—C51.372 (2)C15—C181.377 (2)
C4—H4A0.9300C15—H15A0.9300
C5—H5A0.9300C16—C171.377 (2)
C7—C81.505 (2)C16—H16A0.9300
C7—H7A0.9700C17—H17A0.9300
C7—H7B0.9700C18—H18A0.9300
C1—S1—C7100.76 (7)C17—N3—C18117.10 (15)
C6—O1—H1B107.7 (15)N2—C9—C11123.95 (18)
C8—O3—H3B108.5 (15)N2—C9—H9A118.0
C5—N1—C1117.62 (13)C11—C9—H9A118.0
N1—C1—C2122.38 (13)N2—C10—C12123.33 (17)
N1—C1—S1116.80 (11)N2—C10—H10A118.3
C2—C1—S1120.81 (11)C12—C10—H10A118.3
C3—C2—C1117.85 (13)C9—C11—C13119.21 (16)
C3—C2—C6120.60 (14)C9—C11—H11A120.4
C1—C2—C6121.55 (13)C13—C11—H11A120.4
C4—C3—C2120.01 (14)C10—C12—C13119.28 (16)
C4—C3—H3A120.0C10—C12—H12A120.4
C2—C3—H3A120.0C13—C12—H12A120.4
C5—C4—C3117.84 (14)C11—C13—C12117.19 (14)
C5—C4—H4A121.1C11—C13—C14121.72 (13)
C3—C4—H4A121.1C12—C13—C14121.08 (14)
N1—C5—C4124.29 (14)C15—C14—C16117.39 (14)
N1—C5—H5A117.9C15—C14—C13121.31 (14)
C4—C5—H5A117.9C16—C14—C13121.29 (13)
O2—C6—O1122.82 (14)C18—C15—C14119.29 (15)
O2—C6—C2122.94 (14)C18—C15—H15A120.4
O1—C6—C2114.24 (13)C14—C15—H15A120.4
C8—C7—S1117.93 (12)C17—C16—C14119.04 (15)
C8—C7—H7A107.8C17—C16—H16A120.5
S1—C7—H7A107.8C14—C16—H16A120.5
C8—C7—H7B107.8N3—C17—C16123.77 (17)
S1—C7—H7B107.8N3—C17—H17A118.1
H7A—C7—H7B107.2C16—C17—H17A118.1
O4—C8—O3124.16 (16)N3—C18—C15123.39 (15)
O4—C8—C7122.06 (17)N3—C18—H18A118.3
O3—C8—C7113.72 (14)C15—C18—H18A118.3
C10—N2—C9117.01 (15)
C5—N1—C1—C2−0.4 (2)C10—N2—C9—C11−1.7 (3)
C5—N1—C1—S1178.95 (11)C9—N2—C10—C120.4 (3)
C7—S1—C1—N1−0.26 (12)N2—C9—C11—C131.7 (3)
C7—S1—C1—C2179.13 (11)N2—C10—C12—C130.7 (3)
N1—C1—C2—C30.8 (2)C9—C11—C13—C12−0.5 (2)
S1—C1—C2—C3−178.52 (11)C9—C11—C13—C14−179.32 (15)
N1—C1—C2—C6−179.22 (12)C10—C12—C13—C11−0.6 (2)
S1—C1—C2—C61.43 (18)C10—C12—C13—C14178.20 (15)
C1—C2—C3—C4−0.7 (2)C11—C13—C14—C15−27.4 (2)
C6—C2—C3—C4179.39 (14)C12—C13—C14—C15153.82 (17)
C2—C3—C4—C50.1 (2)C11—C13—C14—C16151.38 (17)
C1—N1—C5—C4−0.2 (2)C12—C13—C14—C16−27.4 (2)
C3—C4—C5—N10.3 (2)C16—C14—C15—C18−1.3 (2)
C3—C2—C6—O2173.56 (15)C13—C14—C15—C18177.51 (15)
C1—C2—C6—O2−6.4 (2)C15—C14—C16—C171.3 (2)
C3—C2—C6—O1−6.0 (2)C13—C14—C16—C17−177.48 (15)
C1—C2—C6—O1174.06 (14)C18—N3—C17—C16−0.6 (3)
C1—S1—C7—C870.16 (12)C14—C16—C17—N3−0.4 (3)
S1—C7—C8—O4−152.53 (14)C17—N3—C18—C150.6 (3)
S1—C7—C8—O330.22 (19)C14—C15—C18—N30.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1B···N2i0.86 (2)1.79 (2)2.6564 (18)178 (2)
O3—H3B···N3ii0.86 (2)1.82 (2)2.6618 (18)167 (2)
C4—H4A···O4iii0.932.553.213 (2)128
C15—H15A···O2ii0.932.393.0664 (19)130
C18—H18A···o2ii0.932.703.232 (2)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯N2i0.86 (2)1.79 (2)2.6564 (18)178 (2)
O3—H3B⋯N3ii0.86 (2)1.82 (2)2.6618 (18)167 (2)
C4—H4A⋯O4iii0.932.553.213 (2)128
C15—H15A⋯O2ii0.932.393.0664 (19)130
C18—H18A⋯o2ii0.932.703.232 (2)117

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(Carboxy-methyl-sulfan-yl)pyridine-3-carboxylic acid monohydrate.

Authors:  Xiao-Juan Wang; Yun-Long Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08
  2 in total
  2 in total

1.  4,4'-Bipyridine-pyridine-3,5-dicarb-oxy-lic acid (3/4).

Authors:  Sheng-Bo Liu; Chao Xu; Taike Duan; Qun Chen; Qian-Feng Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13

2.  Poly[[diaqua-tris(μ2-4,4'-bi-pyridine)-bis[μ2-2-(carb-oxylato-methyl-sulfan-yl)nicotinato]dicobalt(II)] 1.3-hydrate].

Authors:  Rui-Qin Li; Xiao-Juan Wang; Yun-Long Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  2 in total

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