| Literature DB >> 21579395 |
Xiao-Juan Wang1, Yun-Long Feng.
Abstract
The title compound, C(8)H(7)NO(4)S·H(2)O, was obtained by reaction of 2-mercaptopyridine-3-carboxylic acid with chloro-acetic acid. In the mol-ecular structure, the dihedral angle between the two least-squares planes defined by the pyridine ring and the carb-oxy group is 8.32 (9)°. The carboxy-methyl-sulfanyl group makes a torsion angle of 82.64 (12)° with the pyridine ring. An intra-molecular O-H⋯N hydrogen bond between the acidic function of the carboxy-methyl-sulfanyl group and the pyridine N atom stabilizes the conformation, whereas inter-molecular O-H⋯O hydrogen bonding with the uncoordinated water mol-ecules is responsible for packing of the structure, leading to chains propagating in [001].Entities:
Year: 2010 PMID: 21579395 PMCID: PMC2979580 DOI: 10.1107/S1600536810016120
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H7NO4S·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3676 reflections | |
| θ = 2.0–27.6° | |
| µ = 0.33 mm−1 | |
| α = 77.901 (2)° | |
| β = 71.787 (2)° | Sheet, colourless |
| γ = 62.590 (2)° | 0.48 × 0.43 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 2217 independent reflections |
| Radiation source: fine-focus sealed tube | 1910 reflections with |
| graphite | |
| ω scans | θmax = 27.6°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 7375 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2217 reflections | (Δ/σ)max = 0.001 |
| 148 parameters | Δρmax = 0.24 e Å−3 |
| 5 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | −0.82738 (6) | 0.36814 (5) | 1.36087 (3) | 0.04015 (13) | |
| N1 | −0.5286 (2) | 0.09443 (18) | 1.19465 (11) | 0.0391 (3) | |
| O2 | −0.92675 (19) | 0.12020 (17) | 1.57117 (11) | 0.0515 (3) | |
| O4 | −0.6871 (2) | 0.41454 (18) | 1.04260 (11) | 0.0545 (3) | |
| C5 | −0.6485 (2) | 0.1157 (2) | 1.31717 (13) | 0.0336 (3) | |
| O1 | −0.7165 (2) | −0.20956 (19) | 1.61482 (11) | 0.0523 (3) | |
| C4 | −0.6261 (2) | −0.0580 (2) | 1.40665 (13) | 0.0344 (3) | |
| O3 | −0.8462 (2) | 0.74565 (18) | 1.07003 (11) | 0.0612 (4) | |
| C6 | −0.7717 (2) | −0.0376 (2) | 1.53873 (14) | 0.0381 (3) | |
| C3 | −0.3782 (3) | −0.0926 (2) | 1.15876 (15) | 0.0446 (4) | |
| H3A | −0.2974 | −0.1047 | 1.0734 | 0.054* | |
| C8 | −0.7529 (2) | 0.5679 (2) | 1.11102 (15) | 0.0431 (3) | |
| C7 | −0.7046 (3) | 0.5195 (2) | 1.24178 (14) | 0.0408 (3) | |
| H7A | −0.7496 | 0.6490 | 1.2771 | 0.049* | |
| H7B | −0.5511 | 0.4459 | 1.2295 | 0.049* | |
| C2 | −0.4654 (2) | −0.2483 (2) | 1.36726 (15) | 0.0412 (3) | |
| H2A | −0.4430 | −0.3646 | 1.4256 | 0.049* | |
| C1 | −0.3389 (3) | −0.2664 (2) | 1.24242 (16) | 0.0461 (4) | |
| H1A | −0.2298 | −0.3931 | 1.2158 | 0.055* | |
| O1W | −0.0210 (2) | 0.1439 (2) | 1.15804 (12) | 0.0589 (3) | |
| H1WA | 0.034 (3) | 0.020 (2) | 1.145 (2) | 0.071* | |
| H1WB | −0.081 (3) | 0.200 (3) | 1.0980 (19) | 0.071* | |
| H4 | −0.626 (3) | 0.302 (3) | 1.087 (2) | 0.071* | |
| H1 | −0.809 (3) | −0.177 (3) | 1.6845 (18) | 0.071* |
| S1 | 0.0438 (2) | 0.0341 (2) | 0.0296 (2) | −0.00903 (16) | −0.00324 (15) | −0.00379 (14) |
| N1 | 0.0419 (7) | 0.0382 (6) | 0.0309 (6) | −0.0151 (5) | −0.0021 (5) | −0.0057 (5) |
| O2 | 0.0511 (7) | 0.0457 (6) | 0.0380 (6) | −0.0125 (5) | 0.0027 (5) | −0.0045 (5) |
| O4 | 0.0775 (9) | 0.0477 (7) | 0.0319 (6) | −0.0222 (6) | −0.0154 (6) | 0.0017 (5) |
| C5 | 0.0334 (7) | 0.0354 (7) | 0.0301 (7) | −0.0134 (6) | −0.0065 (5) | −0.0043 (5) |
| O1 | 0.0528 (7) | 0.0501 (6) | 0.0378 (6) | −0.0165 (6) | −0.0070 (5) | 0.0093 (5) |
| C4 | 0.0351 (7) | 0.0357 (7) | 0.0326 (7) | −0.0158 (6) | −0.0080 (6) | −0.0020 (5) |
| O3 | 0.0693 (8) | 0.0445 (7) | 0.0426 (6) | −0.0061 (6) | −0.0137 (6) | 0.0073 (5) |
| C6 | 0.0417 (8) | 0.0420 (8) | 0.0328 (7) | −0.0206 (7) | −0.0102 (6) | 0.0008 (6) |
| C3 | 0.0426 (8) | 0.0450 (8) | 0.0376 (8) | −0.0160 (7) | 0.0029 (6) | −0.0121 (6) |
| C8 | 0.0408 (8) | 0.0432 (8) | 0.0352 (8) | −0.0148 (7) | −0.0052 (6) | 0.0031 (6) |
| C7 | 0.0482 (9) | 0.0333 (7) | 0.0376 (7) | −0.0147 (6) | −0.0123 (7) | −0.0001 (6) |
| C2 | 0.0428 (8) | 0.0345 (7) | 0.0437 (8) | −0.0154 (6) | −0.0103 (7) | −0.0011 (6) |
| C1 | 0.0414 (8) | 0.0369 (8) | 0.0504 (9) | −0.0107 (6) | −0.0025 (7) | −0.0124 (7) |
| O1W | 0.0736 (9) | 0.0588 (8) | 0.0365 (6) | −0.0272 (7) | −0.0108 (6) | 0.0050 (6) |
| S1—C5 | 1.7606 (14) | O3—C8 | 1.2184 (18) |
| S1—C7 | 1.8151 (15) | C3—C1 | 1.368 (2) |
| N1—C3 | 1.3421 (19) | C3—H3A | 0.9300 |
| N1—C5 | 1.3438 (18) | C8—C7 | 1.507 (2) |
| O2—C6 | 1.2057 (18) | C7—H7A | 0.9700 |
| O4—C8 | 1.2949 (19) | C7—H7B | 0.9700 |
| O4—H4 | 0.861 (15) | C2—C1 | 1.379 (2) |
| C5—C4 | 1.4078 (19) | C2—H2A | 0.9300 |
| O1—C6 | 1.3180 (18) | C1—H1A | 0.9300 |
| O1—H1 | 0.834 (16) | O1W—H1WA | 0.831 (15) |
| C4—C2 | 1.388 (2) | O1W—H1WB | 0.830 (15) |
| C4—C6 | 1.487 (2) | ||
| C5—S1—C7 | 101.30 (7) | O3—C8—O4 | 121.27 (15) |
| C3—N1—C5 | 119.77 (13) | O3—C8—C7 | 121.00 (15) |
| C8—O4—H4 | 108.4 (15) | O4—C8—C7 | 117.70 (13) |
| N1—C5—C4 | 120.67 (13) | C8—C7—S1 | 116.34 (11) |
| N1—C5—S1 | 117.29 (10) | C8—C7—H7A | 108.2 |
| C4—C5—S1 | 122.02 (11) | S1—C7—H7A | 108.2 |
| C6—O1—H1 | 103.5 (16) | C8—C7—H7B | 108.2 |
| C2—C4—C5 | 117.92 (13) | S1—C7—H7B | 108.2 |
| C2—C4—C6 | 121.27 (13) | H7A—C7—H7B | 107.4 |
| C5—C4—C6 | 120.81 (13) | C1—C2—C4 | 120.56 (14) |
| O2—C6—O1 | 123.86 (14) | C1—C2—H2A | 119.7 |
| O2—C6—C4 | 122.82 (13) | C4—C2—H2A | 119.7 |
| O1—C6—C4 | 113.31 (13) | C3—C1—C2 | 118.13 (14) |
| N1—C3—C1 | 122.77 (14) | C3—C1—H1A | 120.9 |
| N1—C3—H3A | 118.6 | C2—C1—H1A | 120.9 |
| C1—C3—H3A | 118.6 | H1WA—O1W—H1WB | 101.9 (18) |
| C3—N1—C5—C4 | −3.5 (2) | C2—C4—C6—O1 | 7.13 (19) |
| C3—N1—C5—S1 | 174.95 (11) | C5—C4—C6—O1 | −173.44 (13) |
| C7—S1—C5—N1 | −23.50 (12) | C5—N1—C3—C1 | −0.4 (2) |
| C7—S1—C5—C4 | 154.90 (12) | O3—C8—C7—S1 | 117.68 (15) |
| N1—C5—C4—C2 | 5.0 (2) | O4—C8—C7—S1 | −64.05 (18) |
| S1—C5—C4—C2 | −173.31 (11) | C5—S1—C7—C8 | 82.64 (12) |
| N1—C5—C4—C6 | −174.42 (12) | C5—C4—C2—C1 | −2.8 (2) |
| S1—C5—C4—C6 | 7.24 (18) | C6—C4—C2—C1 | 176.64 (13) |
| C2—C4—C6—O2 | −171.59 (14) | N1—C3—C1—C2 | 2.6 (2) |
| C5—C4—C6—O2 | 7.8 (2) | C4—C2—C1—C3 | −0.9 (2) |
| H··· | ||||
| O1W—H1WA···O3i | 0.83 (2) | 2.02 (2) | 2.8319 (18) | 166 (2) |
| O1W—H1WB···O3ii | 0.83 (2) | 1.98 (2) | 2.7784 (18) | 162 (2) |
| O1—H1···O1Wiii | 0.83 (2) | 1.76 (2) | 2.5917 (17) | 171 (2) |
| O4—H4···N1 | 0.86 (2) | 1.72 (2) | 2.5778 (17) | 172 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.83 (2) | 2.02 (2) | 2.8319 (18) | 166 (2) |
| O1 | 0.83 (2) | 1.98 (2) | 2.7784 (18) | 162 (2) |
| O1—H1⋯O1 | 0.83 (2) | 1.76 (2) | 2.5917 (17) | 171 (2) |
| O4—H4⋯N1 | 0.86 (2) | 1.72 (2) | 2.5778 (17) | 172 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .