Literature DB >> 22091061

4,4'-Bipyridine-pyridine-3,5-dicarb-oxy-lic acid (3/4).

Sheng-Bo Liu, Chao Xu, Taike Duan, Qun Chen, Qian-Feng Zhang.   

Abstract

In the title compound, 3C(10)H(8)N(2)·4C(7)H(5)NO(4), the asymmetric unit contains two mol-ecules of pyridine-3,5-dicarb-oxy-lic acid and one mol-ecule of 4,4'-bipyridine in general positions together with one mol-ecule of 4,4'-bipyridine lying across a centre of inversion, thus giving a 4:3 molar ratio of pyridine-3,5-dicarb-oxy-lic acid to 4,4'-bipyridine. The dihedral angle between the bipyridine rings on general positions is 21.2 (2)°. These mol-ecular units are linked by O-H⋯N hydrogen bonds forming an extended two-dimensional framework in the crystal.

Entities:  

Year:  2011        PMID: 22091061      PMCID: PMC3213482          DOI: 10.1107/S160053681102719X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures and properties of self-assembled supermolecular compounds, see: Lehn (1990 ▶). For hydrogen bonds and π–π stacking inter­actions in supermolecular compounds, see: Roesky & Andruh (2003 ▶). For related structures, see: Soleimannejad et al. (2009 ▶); Jiang et al. (2010 ▶).

Experimental

Crystal data

3C10H8N2·4C7H5NO4 M = 1137.04 Monoclinic, a = 13.8461 (4) Å b = 11.0564 (3) Å c = 18.1060 (4) Å β = 110.511 (1)° V = 2596.09 (12) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.14 × 0.12 × 0.05 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.985, T max = 0.995 24265 measured reflections 5918 independent reflections 4086 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.118 S = 1.03 5918 reflections 379 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681102719X/bx2358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681102719X/bx2358Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681102719X/bx2358Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
3C10H8N2·4C7H5NO4F(000) = 1180
Mr = 1137.04Dx = 1.455 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 13.8461 (4) ÅCell parameters from 6026 reflections
b = 11.0564 (3) Åθ = 2.3–27.4°
c = 18.1060 (4) ŵ = 0.11 mm1
β = 110.511 (1)°T = 296 K
V = 2596.09 (12) Å3Bar, colourless
Z = 20.14 × 0.12 × 0.05 mm
Bruker APEXII CCD area-detector diffractometer5918 independent reflections
Radiation source: fine-focus sealed tube4086 reflections with I > 2σ(I)
graphiteRint = 0.031
phi and ω scansθmax = 27.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −17→17
Tmin = 0.985, Tmax = 0.995k = −14→14
24265 measured reflectionsl = −19→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.058P)2 + 0.3037P] where P = (Fo2 + 2Fc2)/3
5918 reflections(Δ/σ)max = 0.001
379 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.89232 (10)0.36614 (11)1.13048 (7)0.0566 (4)
O20.91840 (11)0.19752 (11)1.20316 (7)0.0556 (4)
H20.94750.24391.23950.083*
O30.74670 (12)0.28184 (12)0.82900 (7)0.0623 (4)
O40.71741 (11)0.08686 (12)0.79668 (7)0.0619 (4)
H40.70580.11240.75190.093*
O50.87147 (10)0.21216 (11)0.58878 (6)0.0513 (3)
H50.89400.21000.63710.077*
O60.91991 (11)0.01904 (12)0.60066 (7)0.0624 (4)
O70.79322 (9)−0.10426 (10)0.23327 (6)0.0469 (3)
H70.7969−0.16890.21230.070*
O80.84624 (11)−0.21541 (11)0.34327 (7)0.0577 (4)
N10.75488 (11)−0.01589 (13)1.02110 (8)0.0448 (4)
N20.76208 (10)0.19983 (11)0.34879 (7)0.0357 (3)
N31.06273 (12)0.77515 (15)0.25843 (8)0.0504 (4)
N40.83365 (12)0.65049 (16)−0.14945 (8)0.0520 (4)
N50.51891 (10)0.82688 (12)0.16936 (7)0.0391 (3)
C10.88290 (13)0.25840 (16)1.13706 (9)0.0403 (4)
C20.82884 (12)0.17824 (14)1.06824 (9)0.0360 (4)
C30.79903 (13)0.06220 (15)1.07946 (9)0.0412 (4)
H30.81050.03711.13090.049*
C40.74003 (12)0.02231 (15)0.94810 (9)0.0399 (4)
H4A0.7118−0.03170.90670.048*
C50.76425 (12)0.13790 (15)0.93021 (9)0.0365 (4)
C60.80869 (12)0.21694 (15)0.99183 (9)0.0387 (4)
H60.82490.29550.98190.046*
C70.74147 (13)0.17741 (17)0.84653 (9)0.0435 (4)
C80.88248 (12)0.10611 (15)0.56092 (9)0.0387 (4)
C90.84316 (11)0.10225 (13)0.47271 (8)0.0326 (3)
C100.79689 (12)0.20178 (14)0.42774 (9)0.0341 (3)
H100.78970.27240.45330.041*
C110.77338 (12)0.09854 (14)0.31231 (9)0.0351 (4)
H110.75070.09800.25750.042*
C120.81732 (11)−0.00551 (13)0.35251 (8)0.0333 (3)
C130.85226 (12)−0.00289 (14)0.43401 (9)0.0353 (4)
H130.8818−0.07150.46280.042*
C140.82183 (12)−0.11939 (14)0.30945 (9)0.0365 (4)
C151.05291 (14)0.66299 (18)0.23018 (10)0.0517 (5)
H151.07780.59970.26560.062*
C161.00790 (13)0.63556 (17)0.15141 (10)0.0468 (4)
H161.00070.55540.13480.056*
C170.97328 (12)0.72881 (15)0.09689 (9)0.0377 (4)
C180.92417 (12)0.70293 (16)0.01128 (9)0.0380 (4)
C190.88180 (13)0.58973 (16)−0.01519 (9)0.0444 (4)
H190.88300.52940.02090.053*
C200.83816 (14)0.56738 (18)−0.09498 (10)0.0501 (5)
H200.81070.4911−0.11150.060*
C210.87225 (15)0.75957 (19)−0.12476 (10)0.0557 (5)
H210.86840.8187−0.16220.067*
C220.91764 (14)0.78877 (17)−0.04623 (10)0.0484 (4)
H220.94390.8660−0.03170.058*
C230.98663 (14)0.84544 (17)0.12672 (10)0.0505 (5)
H230.96660.91100.09260.061*
C241.02949 (15)0.86454 (18)0.20685 (11)0.0553 (5)
H241.03540.94350.22560.066*
C250.48131 (13)0.77880 (15)0.09709 (9)0.0407 (4)
H250.45990.69850.09190.049*
C260.47296 (12)0.84300 (14)0.02999 (9)0.0376 (4)
H260.44690.8057−0.01910.045*
C270.50350 (11)0.96381 (14)0.03536 (8)0.0323 (3)
C280.54147 (13)1.01290 (15)0.11086 (9)0.0438 (4)
H280.56241.09330.11800.053*
C290.54790 (13)0.94206 (16)0.17488 (9)0.0444 (4)
H290.57400.97670.22480.053*
U11U22U33U12U13U23
O10.0855 (9)0.0374 (7)0.0412 (7)−0.0112 (6)0.0149 (6)−0.0045 (6)
O20.0860 (9)0.0441 (7)0.0262 (6)−0.0050 (6)0.0065 (6)−0.0053 (5)
O30.0973 (11)0.0522 (9)0.0348 (7)−0.0113 (7)0.0198 (7)0.0069 (6)
O40.0973 (10)0.0599 (9)0.0235 (6)−0.0126 (7)0.0148 (6)−0.0025 (6)
O50.0793 (9)0.0441 (7)0.0249 (6)0.0074 (6)0.0109 (6)−0.0062 (5)
O60.1012 (10)0.0483 (8)0.0291 (6)0.0213 (7)0.0123 (6)0.0055 (6)
O70.0818 (9)0.0287 (6)0.0277 (6)−0.0007 (5)0.0160 (6)−0.0037 (5)
O80.0974 (10)0.0319 (7)0.0366 (7)0.0155 (6)0.0147 (7)0.0028 (5)
N10.0630 (9)0.0356 (8)0.0315 (8)−0.0053 (6)0.0110 (7)−0.0003 (6)
N20.0488 (8)0.0287 (7)0.0277 (7)0.0007 (6)0.0111 (6)0.0008 (5)
N30.0596 (9)0.0583 (10)0.0293 (8)0.0016 (8)0.0105 (7)−0.0065 (7)
N40.0595 (9)0.0672 (11)0.0277 (8)0.0081 (8)0.0129 (7)−0.0009 (8)
N50.0472 (8)0.0396 (8)0.0284 (7)0.0025 (6)0.0104 (6)0.0056 (6)
C10.0531 (10)0.0393 (10)0.0283 (8)−0.0024 (8)0.0141 (7)−0.0041 (7)
C20.0427 (9)0.0362 (9)0.0284 (8)0.0006 (7)0.0114 (7)−0.0014 (7)
C30.0583 (10)0.0381 (9)0.0255 (8)0.0010 (8)0.0125 (7)0.0009 (7)
C40.0486 (9)0.0390 (9)0.0286 (8)−0.0021 (7)0.0092 (7)−0.0044 (7)
C50.0425 (9)0.0409 (9)0.0250 (8)−0.0014 (7)0.0104 (7)−0.0001 (7)
C60.0487 (9)0.0363 (9)0.0313 (9)−0.0033 (7)0.0141 (7)0.0013 (7)
C70.0491 (10)0.0525 (11)0.0278 (9)−0.0062 (8)0.0119 (7)0.0005 (8)
C80.0488 (9)0.0392 (10)0.0271 (8)0.0020 (7)0.0121 (7)−0.0024 (7)
C90.0404 (8)0.0315 (8)0.0256 (8)0.0001 (6)0.0112 (6)−0.0005 (6)
C100.0441 (9)0.0297 (8)0.0288 (8)−0.0016 (7)0.0131 (7)−0.0032 (6)
C110.0473 (9)0.0323 (8)0.0241 (8)−0.0019 (7)0.0106 (6)−0.0005 (6)
C120.0420 (8)0.0290 (8)0.0278 (8)−0.0015 (6)0.0110 (6)−0.0020 (6)
C130.0464 (9)0.0305 (8)0.0267 (8)0.0030 (7)0.0100 (7)0.0022 (6)
C140.0489 (9)0.0304 (9)0.0284 (8)0.0010 (7)0.0113 (7)−0.0006 (6)
C150.0652 (12)0.0530 (12)0.0299 (9)0.0009 (9)0.0080 (8)0.0027 (8)
C160.0588 (11)0.0435 (10)0.0340 (9)−0.0013 (8)0.0112 (8)−0.0023 (8)
C170.0393 (8)0.0444 (10)0.0292 (8)0.0030 (7)0.0116 (7)−0.0020 (7)
C180.0388 (8)0.0477 (10)0.0279 (8)0.0066 (7)0.0119 (7)0.0006 (7)
C190.0513 (10)0.0498 (11)0.0298 (9)0.0020 (8)0.0114 (7)0.0000 (7)
C200.0586 (11)0.0560 (12)0.0330 (9)0.0013 (9)0.0129 (8)−0.0066 (8)
C210.0693 (13)0.0634 (13)0.0351 (10)0.0069 (10)0.0190 (9)0.0098 (9)
C220.0583 (11)0.0500 (11)0.0370 (10)0.0004 (8)0.0166 (8)0.0020 (8)
C230.0645 (11)0.0435 (11)0.0372 (10)0.0082 (9)0.0097 (8)0.0006 (8)
C240.0693 (12)0.0499 (11)0.0409 (11)0.0036 (9)0.0119 (9)−0.0121 (9)
C250.0529 (10)0.0320 (9)0.0353 (9)−0.0008 (7)0.0130 (8)0.0026 (7)
C260.0496 (9)0.0319 (9)0.0276 (8)−0.0005 (7)0.0088 (7)−0.0018 (7)
C270.0361 (8)0.0317 (8)0.0268 (8)0.0015 (6)0.0080 (6)0.0016 (6)
C280.0607 (11)0.0354 (9)0.0306 (9)−0.0111 (8)0.0104 (8)−0.0024 (7)
C290.0583 (10)0.0442 (10)0.0258 (8)−0.0061 (8)0.0086 (7)−0.0013 (7)
O1—C11.209 (2)C9—C131.386 (2)
O2—C11.310 (2)C10—H100.9300
O2—H20.8200C11—C121.383 (2)
O3—C71.206 (2)C11—H110.9300
O4—C71.311 (2)C12—C131.383 (2)
O4—H40.8200C12—C141.494 (2)
O5—C81.3063 (19)C13—H130.9300
O5—H50.8200C15—C161.375 (2)
O6—C81.2049 (19)C15—H150.9300
O7—C141.3056 (18)C16—C171.391 (2)
O7—H70.8200C16—H160.9300
O8—C141.2129 (19)C17—C231.385 (2)
N1—C41.333 (2)C17—C181.486 (2)
N1—C31.335 (2)C18—C221.388 (2)
N2—C111.3370 (19)C18—C191.394 (2)
N2—C101.3391 (19)C19—C201.379 (2)
N3—C241.326 (2)C19—H190.9300
N3—C151.330 (2)C20—H200.9300
N4—C211.331 (2)C21—C221.376 (2)
N4—C201.333 (2)C21—H210.9300
N5—C291.328 (2)C22—H220.9300
N5—C251.337 (2)C23—C241.378 (2)
C1—C21.498 (2)C23—H230.9300
C2—C61.380 (2)C24—H240.9300
C2—C31.384 (2)C25—C261.377 (2)
C3—H30.9300C25—H250.9300
C4—C51.388 (2)C26—C271.394 (2)
C4—H4A0.9300C26—H260.9300
C5—C61.380 (2)C27—C281.391 (2)
C5—C71.500 (2)C27—C27i1.484 (3)
C6—H60.9300C28—C291.376 (2)
C8—C91.496 (2)C28—H280.9300
C9—C101.385 (2)C29—H290.9300
C1—O2—H2109.5O8—C14—O7124.97 (15)
C7—O4—H4109.5O8—C14—C12121.98 (14)
C8—O5—H5109.5O7—C14—C12113.00 (13)
C14—O7—H7109.5N3—C15—C16123.54 (17)
C4—N1—C3116.65 (14)N3—C15—H15118.2
C11—N2—C10118.70 (13)C16—C15—H15118.2
C24—N3—C15117.42 (15)C15—C16—C17119.38 (17)
C21—N4—C20117.81 (15)C15—C16—H16120.3
C29—N5—C25117.28 (13)C17—C16—H16120.3
O1—C1—O2125.29 (15)C23—C17—C16116.58 (15)
O1—C1—C2122.74 (15)C23—C17—C18122.40 (15)
O2—C1—C2111.97 (14)C16—C17—C18121.02 (15)
C6—C2—C3117.94 (15)C22—C18—C19116.55 (15)
C6—C2—C1121.12 (15)C22—C18—C17122.44 (16)
C3—C2—C1120.93 (14)C19—C18—C17121.01 (15)
N1—C3—C2124.09 (15)C20—C19—C18119.88 (17)
N1—C3—H3118.0C20—C19—H19120.1
C2—C3—H3118.0C18—C19—H19120.1
N1—C4—C5123.85 (15)N4—C20—C19122.77 (18)
N1—C4—H4A118.1N4—C20—H20118.6
C5—C4—H4A118.1C19—C20—H20118.6
C6—C5—C4118.04 (14)N4—C21—C22122.94 (17)
C6—C5—C7120.54 (15)N4—C21—H21118.5
C4—C5—C7121.41 (14)C22—C21—H21118.5
C2—C6—C5119.35 (15)C21—C22—C18120.04 (18)
C2—C6—H6120.3C21—C22—H22120.0
C5—C6—H6120.3C18—C22—H22120.0
O3—C7—O4125.04 (15)C24—C23—C17120.18 (17)
O3—C7—C5122.25 (16)C24—C23—H23119.9
O4—C7—C5112.70 (15)C17—C23—H23119.9
O6—C8—O5124.79 (15)N3—C24—C23122.84 (18)
O6—C8—C9122.28 (15)N3—C24—H24118.6
O5—C8—C9112.93 (14)C23—C24—H24118.6
C10—C9—C13118.32 (14)N5—C25—C26122.83 (15)
C10—C9—C8121.67 (14)N5—C25—H25118.6
C13—C9—C8120.00 (13)C26—C25—H25118.6
N2—C10—C9122.28 (14)C25—C26—C27120.19 (14)
N2—C10—H10118.9C25—C26—H26119.9
C9—C10—H10118.9C27—C26—H26119.9
N2—C11—C12122.87 (14)C28—C27—C26116.31 (14)
N2—C11—H11118.6C28—C27—C27i121.69 (17)
C12—C11—H11118.6C26—C27—C27i122.00 (17)
C13—C12—C11117.97 (14)C29—C28—C27119.75 (15)
C13—C12—C14120.78 (14)C29—C28—H28120.1
C11—C12—C14121.17 (13)C27—C28—H28120.1
C12—C13—C9119.84 (14)N5—C29—C28123.63 (15)
C12—C13—H13120.1N5—C29—H29118.2
C9—C13—H13120.1C28—C29—H29118.2
D—H···AD—HH···AD···AD—H···A
O2—H2···N5ii0.821.802.5928 (17)162.
O4—H4···N4iii0.821.792.6037 (18)172.
O5—H5···N3iv0.821.782.5956 (17)173.
O7—H7···N2iii0.821.832.5862 (16)152.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N5i0.821.802.5928 (17)162
O4—H4⋯N4ii0.821.792.6037 (18)172
O5—H5⋯N3iii0.821.782.5956 (17)173
O7—H7⋯N2ii0.821.832.5862 (16)152

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,4'-Bipyridinium bis-(2-carboxy-pyridine-3-carboxyl-ate).

Authors:  Janet Soleimannejad; Hossein Aghabozorg; Ali Morsali; Foruzan Hemmati; Faranak Manteghi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17

3.  4,4'-Bipyridine-2-(carb-oxy-methyl-sulfan-yl)pyridine-3-carb-oxy-lic acid (1/1).

Authors:  Xian-Rong Jiang; Xiao-Juan Wang; Yun-Long Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27
  3 in total

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