Literature DB >> 21589583

12-(4-Chloro-phen-yl)-7-methyl-10-phenyl-3,4,5,6,8,10-hexa-aza-tricyclo-[7.3.0.0]dodeca-1(9),2,4,7,11-penta-ene.

Rina D Shah, Mukesh M Jotani, Edward R T Tiekink.   

Abstract

The 12 non-H atoms defining the triple-fused-ring system in the title compound, C(19)H(13)ClN(6), are almost coplanar (r.m.s. deviation = 0.023 Å). The chloro-substituted ring is almost effectively coplanar with the central atoms [dihedral angle = 6.74 (13)°], but the N-bound benzene ring is not [dihedral angle = 54.38 (13)°]. In the crystal, supra-molecular chains along the a axis sustained by C-H⋯π and π-π [centroid-centroid distance between N(4)C and C(4)N five-membered rings = 3.484 (2) Å] stacking occur. A very long C-Cl⋯π contact is also seen.

Entities:  

Year:  2010        PMID: 21589583      PMCID: PMC3011633          DOI: 10.1107/S1600536810048373

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of imidazoles, see: Yohjiro et al. (1990 ▶). For related structures, see: Jotani et al. (2010a ▶,b ▶). Semi-empirical quantum chemical calculations were performed using MOPAC2009, see: Stewart (2009 ▶).

Experimental

Crystal data

C19H13ClN6 M = 360.80 Orthorhombic, a = 6.9459 (5) Å b = 9.7010 (8) Å c = 24.0382 (16) Å V = 1619.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 293 K 0.40 × 0.22 × 0.15 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.928, T max = 0.975 8751 measured reflections 1677 independent reflections 1405 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 0.98 1677 reflections 236 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810048373/hb5751sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048373/hb5751Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H13ClN6F(000) = 744
Mr = 360.80Dx = 1.480 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3699 reflections
a = 6.9459 (5) Åθ = 2.3–29.6°
b = 9.7010 (8) ŵ = 0.25 mm1
c = 24.0382 (16) ÅT = 293 K
V = 1619.7 (2) Å3Block, colourless
Z = 40.40 × 0.22 × 0.15 mm
Bruker SMART APEX CCD diffractometer1677 independent reflections
Radiation source: fine-focus sealed tube1405 reflections with I > 2σ(I)
graphiteRint = 0.047
ω and φ scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→4
Tmin = 0.928, Tmax = 0.975k = −11→11
8751 measured reflectionsl = −27→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.066P)2] where P = (Fo2 + 2Fc2)/3
1677 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.39113 (13)0.63434 (9)0.75124 (3)0.0425 (3)
N10.4515 (4)0.4484 (3)0.42147 (10)0.0298 (6)
N20.4434 (4)0.2102 (3)0.39545 (10)0.0298 (6)
N30.4374 (4)0.0610 (3)0.47095 (10)0.0283 (6)
N40.4365 (5)−0.0648 (3)0.49607 (11)0.0376 (7)
N50.4374 (5)−0.0389 (3)0.54866 (12)0.0425 (8)
N60.4393 (5)0.0980 (3)0.56050 (11)0.0361 (7)
C10.4475 (5)0.3117 (3)0.43459 (12)0.0278 (7)
C20.4411 (5)0.2987 (3)0.49267 (11)0.0245 (7)
C30.4383 (5)0.4353 (3)0.51533 (12)0.0273 (7)
C40.4465 (5)0.5218 (3)0.47005 (13)0.0301 (7)
H40.44840.61750.47220.036*
C50.4366 (5)0.0842 (3)0.41388 (13)0.0300 (7)
C60.4393 (5)0.1602 (3)0.51112 (12)0.0281 (7)
C70.4230 (6)−0.0361 (4)0.37716 (14)0.0405 (9)
H7A0.2920−0.06740.37580.061*
H7B0.5037−0.10850.39120.061*
H7C0.4645−0.01110.34040.061*
C80.4640 (5)0.5089 (3)0.36712 (12)0.0289 (8)
C90.6114 (5)0.4716 (4)0.33131 (13)0.0349 (8)
H90.70110.40510.34160.042*
C100.6221 (6)0.5346 (4)0.28045 (13)0.0408 (9)
H100.71860.50870.25570.049*
C110.4940 (5)0.6351 (4)0.26511 (13)0.0394 (9)
H110.50540.67850.23080.047*
C120.3477 (5)0.6713 (4)0.30125 (13)0.0396 (9)
H120.25960.73900.29120.048*
C130.3322 (5)0.6070 (4)0.35236 (13)0.0358 (8)
H130.23290.63040.37650.043*
C140.4292 (5)0.4834 (3)0.57356 (12)0.0276 (7)
C150.4074 (5)0.6233 (3)0.58553 (13)0.0315 (7)
H150.39970.68600.55640.038*
C160.3968 (5)0.6708 (3)0.63951 (13)0.0336 (8)
H160.38240.76440.64670.040*
C170.4079 (5)0.5776 (3)0.68284 (12)0.0300 (7)
C180.4282 (5)0.4389 (3)0.67246 (13)0.0340 (8)
H180.43420.37680.70190.041*
C190.4397 (5)0.3921 (3)0.61828 (12)0.0319 (7)
H190.45480.29830.61150.038*
U11U22U33U12U13U23
Cl10.0529 (6)0.0401 (5)0.0344 (4)−0.0031 (4)0.0028 (4)−0.0066 (4)
N10.0367 (16)0.0210 (15)0.0317 (14)−0.0009 (13)0.0002 (12)0.0045 (12)
N20.0289 (15)0.0257 (16)0.0348 (14)−0.0007 (14)−0.0003 (12)−0.0003 (12)
N30.0281 (15)0.0209 (14)0.0358 (14)−0.0017 (12)0.0016 (12)−0.0010 (12)
N40.0465 (19)0.0210 (15)0.0453 (18)−0.0009 (15)0.0005 (14)0.0049 (13)
N50.061 (2)0.0213 (17)0.0457 (18)−0.0007 (16)0.0016 (16)0.0061 (14)
N60.0501 (18)0.0232 (16)0.0349 (16)−0.0033 (14)0.0033 (13)0.0065 (12)
C10.0252 (17)0.0243 (18)0.0339 (17)0.0003 (15)0.0006 (14)0.0015 (14)
C20.0231 (17)0.0235 (17)0.0269 (15)0.0006 (15)0.0011 (13)0.0036 (13)
C30.0260 (17)0.0229 (17)0.0329 (17)0.0016 (15)−0.0016 (14)0.0033 (14)
C40.0365 (19)0.0214 (18)0.0323 (17)−0.0015 (15)0.0007 (15)−0.0013 (14)
C50.0238 (18)0.0308 (19)0.0355 (18)0.0000 (15)0.0017 (14)−0.0022 (15)
C60.0233 (17)0.0260 (18)0.0350 (17)0.0001 (15)0.0020 (13)0.0004 (14)
C70.043 (2)0.030 (2)0.048 (2)0.0006 (18)0.0033 (18)−0.0072 (16)
C80.0356 (19)0.0227 (18)0.0286 (17)−0.0026 (15)−0.0030 (14)0.0036 (14)
C90.035 (2)0.031 (2)0.0384 (18)0.0043 (16)0.0018 (15)0.0023 (16)
C100.044 (2)0.045 (2)0.0336 (19)−0.0009 (19)0.0070 (15)0.0038 (17)
C110.054 (2)0.031 (2)0.0338 (19)−0.0061 (17)−0.0049 (15)0.0061 (17)
C120.053 (2)0.032 (2)0.0336 (18)0.0090 (17)−0.0063 (16)0.0038 (16)
C130.043 (2)0.031 (2)0.0330 (18)0.0033 (16)0.0013 (14)−0.0008 (16)
C140.0256 (18)0.0259 (18)0.0314 (16)−0.0047 (15)0.0011 (14)−0.0022 (14)
C150.038 (2)0.0224 (17)0.0341 (17)0.0005 (16)−0.0012 (14)0.0057 (15)
C160.035 (2)0.0216 (18)0.0443 (19)−0.0005 (14)0.0002 (15)−0.0034 (16)
C170.0268 (18)0.033 (2)0.0304 (16)−0.0015 (14)−0.0010 (13)−0.0010 (14)
C180.041 (2)0.0290 (19)0.0325 (17)−0.0014 (17)0.0019 (15)0.0067 (15)
C190.0369 (18)0.0220 (18)0.0366 (18)−0.0036 (16)−0.0021 (15)0.0037 (14)
Cl1—C171.738 (3)C8—C131.368 (5)
N1—C11.364 (4)C8—C91.386 (5)
N1—C41.368 (4)C9—C101.369 (5)
N1—C81.435 (4)C9—H90.9300
N2—C51.301 (4)C10—C111.370 (5)
N2—C11.362 (4)C10—H100.9300
N3—C61.364 (4)C11—C121.382 (5)
N3—N41.361 (4)C11—H110.9300
N3—C51.390 (4)C12—C131.382 (5)
N4—N51.289 (4)C12—H120.9300
N5—N61.359 (4)C13—H130.9300
N6—C61.332 (4)C14—C191.395 (4)
C1—C21.402 (4)C14—C151.395 (4)
C2—C61.415 (4)C15—C161.379 (4)
C2—C31.433 (4)C15—H150.9300
C3—C41.376 (4)C16—C171.382 (4)
C3—C141.477 (4)C16—H160.9300
C4—H40.9300C17—C181.375 (5)
C5—C71.466 (4)C18—C191.382 (4)
C7—H7A0.9600C18—H180.9300
C7—H7B0.9600C19—H190.9300
C7—H7C0.9600
C1—N1—C4108.0 (3)C13—C8—N1118.7 (3)
C1—N1—C8127.6 (3)C9—C8—N1120.2 (3)
C4—N1—C8124.5 (3)C10—C9—C8118.6 (3)
C5—N2—C1116.4 (3)C10—C9—H9120.7
C6—N3—N4108.6 (2)C8—C9—H9120.7
C6—N3—C5125.8 (3)C9—C10—C11121.5 (3)
N4—N3—C5125.7 (3)C9—C10—H10119.2
N5—N4—N3105.1 (3)C11—C10—H10119.2
N4—N5—N6113.3 (3)C10—C11—C12119.3 (3)
C6—N6—N5104.9 (3)C10—C11—H11120.4
N2—C1—N1122.9 (3)C12—C11—H11120.4
N2—C1—C2128.5 (3)C11—C12—C13120.1 (3)
N1—C1—C2108.5 (3)C11—C12—H12120.0
C1—C2—C6113.4 (3)C13—C12—H12120.0
C1—C2—C3107.2 (3)C8—C13—C12119.5 (3)
C6—C2—C3139.4 (3)C8—C13—H13120.2
C4—C3—C2105.2 (3)C12—C13—H13120.2
C4—C3—C14124.0 (3)C19—C14—C15117.7 (3)
C2—C3—C14130.8 (3)C19—C14—C3121.9 (3)
N1—C4—C3111.0 (3)C15—C14—C3120.5 (3)
N1—C4—H4124.5C16—C15—C14121.7 (3)
C3—C4—H4124.5C16—C15—H15119.2
N2—C5—N3119.2 (3)C14—C15—H15119.2
N2—C5—C7123.0 (3)C17—C16—C15119.2 (3)
N3—C5—C7117.7 (3)C17—C16—H16120.4
N6—C6—N3108.1 (3)C15—C16—H16120.4
N6—C6—C2135.2 (3)C18—C17—C16120.6 (3)
N3—C6—C2116.7 (3)C18—C17—Cl1119.2 (2)
C5—C7—H7A109.5C16—C17—Cl1120.1 (3)
C5—C7—H7B109.5C17—C18—C19119.9 (3)
H7A—C7—H7B109.5C17—C18—H18120.0
C5—C7—H7C109.5C19—C18—H18120.0
H7A—C7—H7C109.5C18—C19—C14121.0 (3)
H7B—C7—H7C109.5C18—C19—H19119.5
C13—C8—C9121.0 (3)C14—C19—H19119.5
C6—N3—N4—N50.2 (4)N4—N3—C6—C2179.8 (3)
C5—N3—N4—N5−179.9 (3)C5—N3—C6—C2−0.1 (5)
N3—N4—N5—N6−0.1 (4)C1—C2—C6—N6177.8 (4)
N4—N5—N6—C60.1 (4)C3—C2—C6—N6−2.2 (8)
C5—N2—C1—N1−178.9 (3)C1—C2—C6—N3−2.2 (4)
C5—N2—C1—C2−1.5 (5)C3—C2—C6—N3177.9 (4)
C4—N1—C1—N2177.4 (3)C1—N1—C8—C13128.3 (4)
C8—N1—C1—N2−4.1 (5)C4—N1—C8—C13−53.5 (5)
C4—N1—C1—C2−0.4 (4)C1—N1—C8—C9−54.1 (5)
C8—N1—C1—C2178.1 (3)C4—N1—C8—C9124.2 (4)
N2—C1—C2—C63.2 (5)C13—C8—C9—C10−0.4 (5)
N1—C1—C2—C6−179.1 (3)N1—C8—C9—C10−178.0 (3)
N2—C1—C2—C3−176.8 (3)C8—C9—C10—C111.6 (5)
N1—C1—C2—C30.9 (4)C9—C10—C11—C12−1.6 (6)
C1—C2—C3—C4−1.0 (4)C10—C11—C12—C130.4 (5)
C6—C2—C3—C4179.0 (4)C9—C8—C13—C12−0.8 (5)
C1—C2—C3—C14179.1 (3)N1—C8—C13—C12176.8 (3)
C6—C2—C3—C14−1.0 (7)C11—C12—C13—C80.8 (5)
C1—N1—C4—C3−0.3 (4)C4—C3—C14—C19−173.7 (3)
C8—N1—C4—C3−178.8 (3)C2—C3—C14—C196.2 (6)
C2—C3—C4—N10.8 (4)C4—C3—C14—C157.0 (5)
C14—C3—C4—N1−179.3 (3)C2—C3—C14—C15−173.1 (3)
C1—N2—C5—N3−1.1 (5)C19—C14—C15—C160.1 (5)
C1—N2—C5—C7177.3 (3)C3—C14—C15—C16179.5 (3)
C6—N3—C5—N22.0 (5)C14—C15—C16—C17−0.1 (5)
N4—N3—C5—N2−178.0 (3)C15—C16—C17—C18−0.3 (5)
C6—N3—C5—C7−176.5 (3)C15—C16—C17—Cl1−179.0 (3)
N4—N3—C5—C73.5 (5)C16—C17—C18—C190.7 (5)
N5—N6—C6—N30.0 (4)Cl1—C17—C18—C19179.3 (3)
N5—N6—C6—C2−179.9 (4)C17—C18—C19—C14−0.6 (5)
N4—N3—C6—N6−0.1 (4)C15—C14—C19—C180.2 (5)
C5—N3—C6—N6179.9 (3)C3—C14—C19—C18−179.1 (3)
Cg1 and Cg2 are the centroids of the C14–C19 and C8–C13 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C7—H7a···Cg1i0.962.623.509 (5)154
C17—Cl1···Cg2ii1.737 (4)3.608 (2)4.423 (4)106.34 (13)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C14–C19 and C8–C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7a⋯Cg1i0.962.623.509 (5)154
C17—Cl1⋯Cg2ii1.74 (1)3.61 (1)4.423 (4)106 (1)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  12-(4-Methoxy-phen-yl)-10-phenyl-3,4,5,6,8,10-hexa-azatricyclo-[7.3.0.0]dodeca-1(9),2,4,7,11-penta-ene.

Authors:  Mukesh M Jotani; Rina D Shah; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

3.  7-(4-Methoxy-phen-yl)-5-methyl-9-phenyl-7H-pyrrolo[2',3':4,5]pyrimido[1,6-d]tetrazole.

Authors:  Mukesh M Jotani; Rina D Shah; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19
  3 in total

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