Literature DB >> 21580097

7-(4-Methoxy-phen-yl)-5-methyl-9-phenyl-7H-pyrrolo[2',3':4,5]pyrimido[1,6-d]tetrazole.

Mukesh M Jotani, Rina D Shah, Jerry P Jasinski.   

Abstract

The title compound, C(20)H(16)N(6)O, is composed of a tetra-zolo ring and a 4-methoxy-phenyl and a benzene-substituted pyrrole ring at the 7 and 9 positions fused to a pyrimidine ring in a nearly planar fashion [maximum deviation of 0.018 (1) Å for the fused ring system]. A methyl group at the 5 position is also in the plane of the hetero cyclic system. The dihedral angle between the mean planes of the benzene and 4-methoxy-phenyl rings is 40.4 (2)°. The dihedral angles between the mean planes of the pyrimidine and the benzene and 4-methoxy-phenyl rings are 15.6 (5)° and 52.6 (7)°, respectively. A weak intra-molecular C-H⋯N hydrogen bond inter-action, which forms an S(7) graph-set motif, helps to establish the relative conformations of the tetrazolo and benzene rings. In the crystal, weak inter-molecular C-H⋯O, C-H⋯π and π-π stacking inter-actions [centroid-centroid distances = 3.5270 (16), 3.5113 (16), 3.7275 (17) and 3.7866 (17) Å] link the mol-ecules into a two-dimensional array obliquely parallel to (101) and propagating along the b axis.

Entities:  

Year:  2009        PMID: 21580097      PMCID: PMC2980237          DOI: 10.1107/S1600536809053653

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of fused tetra­zolopyrimidines, see: Wilkinson (1992 ▶); Omer et al. (1991 ▶); Schram et al. (1975 ▶). Fused pyrimidines with a halogen at the 2- or 4- position seem to be more labile towards a nucleophilic substitution reaction with reagents such as piperadine, piperazine, morpholine, hydrazine and azides, forming potent bi- and triheterocycles, see: Dave & Shah (2000 ▶, 2002 ▶); Peinador et al. (1992 ▶); Schneller & Clough (1992 ▶); Shishoo & Jain (1992 ▶). For the importance of the reduction of tetra­zolopyrimidines via azido­lysis in the development of synthetically important 4-amino­pyrimidines, see: Shishoo & Jain (1992 ▶); Hand & Backer (1984 ▶). For nucleophilic substitution reactions in pyrrolo[2,3-e] pyrimidines, see: Dave & Shah (2002 ▶); Ali & Swealan (1992 ▶). For related structures, see: Jotani & Baldaniya (2007 ▶, 2008 ▶); Hou et al. (2009 ▶); Baldaniya & Jotani (2008 ▶); Malone et al. (1997 ▶). For the synthesis, see: Shah (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For tetrazolo ring formation, see: Bourgurgnon et al. (1975 ▶); Robba et al. (1975 ▶).

Experimental

Crystal data

C20H16N6O M = 356.39 Monoclinic, a = 13.738 (2) Å b = 7.032 (3) Å c = 19.4350 (3) Å β = 110.217 (2)° V = 1761.9 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.47 × 0.35 × 0.2 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.96, T max = 0.98 42323 measured reflections 5137 independent reflections 3694 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.129 S = 1.04 5137 reflections 247 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR2004 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-32 and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809053653/gw2072sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809053653/gw2072Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N6OF(000) = 744
Mr = 356.39Dx = 1.344 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5176 reflections
a = 13.738 (2) Åθ = 2.2–31.3°
b = 7.032 (3) ŵ = 0.09 mm1
c = 19.4350 (3) ÅT = 293 K
β = 110.217 (2)°Plate, yellow
V = 1761.9 (8) Å30.47 × 0.35 × 0.2 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer5137 independent reflections
Radiation source: fine-focus sealed tube3694 reflections with I > 2σ(I)
graphiteRint = 0.030
ω and φ scanθmax = 30.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −19→19
Tmin = 0.96, Tmax = 0.98k = −4→9
42323 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.0656P)2 + 0.2469P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
5137 reflectionsΔρmax = 0.29 e Å3
247 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0104 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.49323 (7)0.66669 (14)0.35550 (5)0.0364 (2)
N20.64444 (8)0.71967 (13)0.46114 (6)0.0390 (2)
N30.60830 (8)0.78499 (13)0.56626 (5)0.0387 (2)
N40.63253 (10)0.82763 (16)0.63905 (6)0.0503 (3)
N50.54477 (10)0.84057 (18)0.64892 (6)0.0553 (3)
N60.46241 (9)0.80796 (15)0.58676 (5)0.0461 (3)
O10.67511 (8)0.63011 (14)0.14173 (5)0.0557 (3)
C10.54006 (9)0.70521 (14)0.42843 (6)0.0342 (2)
C20.46308 (9)0.72839 (14)0.45931 (6)0.0322 (2)
C30.36448 (9)0.70460 (14)0.40206 (6)0.0331 (2)
C40.38831 (9)0.66682 (16)0.34039 (6)0.0372 (2)
H40.33830.64370.29330.045*
C50.67850 (10)0.75945 (15)0.53047 (7)0.0400 (3)
C60.50261 (9)0.77276 (14)0.53513 (6)0.0350 (2)
C70.79065 (11)0.7757 (2)0.57366 (8)0.0538 (3)
H7A0.83070.76510.54080.081*
H7B0.81090.67350.61020.081*
H7C0.80440.89910.59860.081*
C80.25890 (9)0.71760 (15)0.40362 (6)0.0348 (2)
C90.17475 (10)0.73306 (18)0.33836 (7)0.0437 (3)
H90.18670.73610.29310.052*
C100.07452 (11)0.7441 (2)0.33822 (8)0.0531 (3)
H100.01830.75400.29310.064*
C110.05569 (11)0.7407 (2)0.40303 (9)0.0572 (4)
H11−0.01340.74930.40300.069*
C120.13717 (12)0.7249 (2)0.46801 (9)0.0559 (4)
H120.12420.72170.51290.067*
C130.23768 (11)0.71372 (18)0.46865 (7)0.0444 (3)
H130.29320.70320.51410.053*
C140.54240 (9)0.65119 (16)0.30183 (6)0.0352 (2)
C150.50818 (9)0.76648 (17)0.24049 (6)0.0409 (3)
H150.45330.85420.23480.049*
C160.55355 (10)0.75407 (18)0.18782 (7)0.0437 (3)
H160.52940.83200.14540.052*
C170.63448 (9)0.62818 (17)0.19641 (6)0.0397 (3)
C180.66942 (9)0.51457 (18)0.25825 (7)0.0430 (3)
H180.72540.42910.26460.052*
C190.62275 (9)0.52564 (17)0.31077 (6)0.0413 (3)
H190.64610.44670.35300.050*
C200.75810 (14)0.5043 (3)0.14708 (10)0.0782 (6)
H20A0.81680.53240.19180.117*
H20B0.77950.52070.10430.117*
H20C0.73540.37280.14880.117*
U11U22U33U12U13U23
N10.0378 (5)0.0443 (5)0.0276 (5)0.0018 (4)0.0121 (4)−0.0010 (4)
N20.0382 (5)0.0396 (5)0.0362 (5)0.0018 (4)0.0092 (4)0.0011 (4)
N30.0492 (6)0.0345 (4)0.0271 (5)−0.0023 (4)0.0064 (4)0.0001 (3)
N40.0663 (8)0.0509 (6)0.0272 (5)−0.0076 (5)0.0080 (5)−0.0035 (4)
N50.0717 (8)0.0613 (7)0.0300 (6)−0.0110 (6)0.0139 (5)−0.0068 (5)
N60.0620 (7)0.0495 (6)0.0284 (5)−0.0074 (5)0.0175 (5)−0.0042 (4)
O10.0641 (6)0.0690 (6)0.0459 (5)0.0180 (5)0.0340 (5)0.0111 (4)
C10.0401 (6)0.0329 (5)0.0285 (5)0.0015 (4)0.0105 (4)0.0016 (4)
C20.0406 (6)0.0288 (4)0.0272 (5)0.0002 (4)0.0118 (4)0.0018 (4)
C30.0388 (6)0.0327 (5)0.0278 (5)0.0006 (4)0.0115 (4)0.0016 (4)
C40.0365 (6)0.0436 (6)0.0298 (5)0.0000 (4)0.0095 (5)−0.0017 (4)
C50.0437 (7)0.0334 (5)0.0373 (6)0.0010 (4)0.0069 (5)0.0014 (4)
C60.0458 (6)0.0289 (5)0.0293 (5)−0.0020 (4)0.0115 (5)0.0017 (4)
C70.0451 (7)0.0510 (7)0.0520 (8)−0.0023 (5)−0.0001 (6)−0.0040 (6)
C80.0407 (6)0.0320 (5)0.0326 (6)−0.0005 (4)0.0137 (5)−0.0007 (4)
C90.0426 (7)0.0532 (7)0.0346 (6)0.0003 (5)0.0124 (5)−0.0012 (5)
C100.0404 (7)0.0647 (8)0.0496 (8)0.0015 (6)0.0096 (6)−0.0037 (6)
C110.0430 (8)0.0684 (9)0.0646 (10)−0.0028 (6)0.0244 (7)−0.0089 (7)
C120.0543 (8)0.0711 (9)0.0512 (8)−0.0043 (7)0.0297 (7)−0.0068 (6)
C130.0464 (7)0.0536 (7)0.0349 (6)−0.0008 (5)0.0161 (5)−0.0016 (5)
C140.0369 (6)0.0420 (5)0.0277 (5)−0.0006 (4)0.0124 (4)−0.0023 (4)
C150.0381 (6)0.0512 (6)0.0327 (6)0.0103 (5)0.0113 (5)0.0035 (5)
C160.0448 (7)0.0550 (7)0.0312 (6)0.0087 (5)0.0129 (5)0.0090 (5)
C170.0416 (6)0.0474 (6)0.0337 (6)0.0020 (5)0.0174 (5)0.0000 (4)
C180.0451 (7)0.0448 (6)0.0426 (7)0.0110 (5)0.0195 (5)0.0049 (5)
C190.0472 (7)0.0433 (6)0.0348 (6)0.0075 (5)0.0158 (5)0.0069 (4)
C200.0943 (13)0.0825 (11)0.0864 (12)0.0367 (10)0.0674 (11)0.0245 (9)
N1—C11.3661 (14)C8—C91.3942 (17)
N1—C41.3680 (15)C9—C101.3783 (18)
N1—C141.4294 (14)C9—H90.9500
N2—C51.2951 (16)C10—C111.371 (2)
N2—C11.3567 (15)C10—H100.9500
N3—C61.3691 (16)C11—C121.372 (2)
N3—N41.3699 (14)C11—H110.9500
N3—C51.3819 (17)C12—C131.379 (2)
N4—N51.2879 (17)C12—H120.9500
N5—N61.3591 (16)C13—H130.9500
N6—C61.3254 (15)C14—C191.3768 (16)
O1—C171.3606 (13)C14—C151.3828 (16)
O1—C201.4183 (17)C15—C161.3730 (17)
C1—C21.3942 (16)C15—H150.9500
C2—C61.4178 (15)C16—C171.3854 (17)
C2—C31.4351 (15)C16—H160.9500
C3—C41.3730 (15)C17—C181.3835 (16)
C3—C81.4640 (16)C18—C191.3825 (16)
C4—H40.9500C18—H180.9500
C5—C71.4824 (18)C19—H190.9500
C7—H7A0.9800C20—H20A0.9800
C7—H7B0.9800C20—H20B0.9800
C7—H7C0.9800C20—H20C0.9800
C8—C131.3920 (17)
C1—N1—C4107.82 (9)C10—C9—H9119.3
C1—N1—C14126.90 (10)C8—C9—H9119.3
C4—N1—C14124.89 (9)C11—C10—C9120.20 (14)
C5—N2—C1116.55 (11)C11—C10—H10119.9
C6—N3—N4108.19 (10)C9—C10—H10119.9
C6—N3—C5125.97 (10)C10—C11—C12119.60 (13)
N4—N3—C5125.83 (11)C10—C11—H11120.2
N5—N4—N3105.27 (10)C12—C11—H11120.2
N4—N5—N6112.98 (11)C11—C12—C13120.58 (13)
C6—N6—N5105.53 (11)C11—C12—H12119.7
C17—O1—C20118.22 (10)C13—C12—H12119.7
N2—C1—N1122.92 (10)C12—C13—C8120.93 (13)
N2—C1—C2128.74 (10)C12—C13—H13119.5
N1—C1—C2108.33 (10)C8—C13—H13119.5
C1—C2—C6113.45 (10)C19—C14—C15120.24 (10)
C1—C2—C3107.80 (9)C19—C14—N1121.15 (10)
C6—C2—C3138.71 (11)C15—C14—N1118.61 (10)
C4—C3—C2104.68 (10)C16—C15—C14119.92 (11)
C4—C3—C8124.54 (10)C16—C15—H15120.0
C2—C3—C8130.77 (10)C14—C15—H15120.0
N1—C4—C3111.35 (10)C15—C16—C17120.19 (11)
N1—C4—H4124.3C15—C16—H16119.9
C3—C4—H4124.3C17—C16—H16119.9
N2—C5—N3119.19 (11)O1—C17—C18124.85 (11)
N2—C5—C7122.47 (12)O1—C17—C16115.35 (10)
N3—C5—C7118.33 (11)C18—C17—C16119.78 (11)
N6—C6—N3108.03 (10)C19—C18—C17119.91 (11)
N6—C6—C2135.87 (11)C19—C18—H18120.0
N3—C6—C2116.10 (10)C17—C18—H18120.0
C5—C7—H7A109.5C14—C19—C18119.94 (11)
C5—C7—H7B109.5C14—C19—H19120.0
H7A—C7—H7B109.5C18—C19—H19120.0
C5—C7—H7C109.5O1—C20—H20A109.5
H7A—C7—H7C109.5O1—C20—H20B109.5
H7B—C7—H7C109.5H20A—C20—H20B109.5
C13—C8—C9117.35 (11)O1—C20—H20C109.5
C13—C8—C3122.51 (11)H20A—C20—H20C109.5
C9—C8—C3120.13 (10)H20B—C20—H20C109.5
C10—C9—C8121.33 (12)
C6—N3—N4—N5−0.45 (12)C5—N3—C6—C20.47 (15)
C5—N3—N4—N5179.34 (10)C1—C2—C6—N6179.44 (12)
N3—N4—N5—N60.33 (14)C3—C2—C6—N61.9 (2)
N4—N5—N6—C6−0.08 (14)C1—C2—C6—N3−0.34 (13)
C5—N2—C1—N1179.05 (10)C3—C2—C6—N3−177.88 (11)
C5—N2—C1—C20.35 (17)C4—C3—C8—C13165.29 (11)
C4—N1—C1—N2−178.52 (10)C2—C3—C8—C13−15.64 (17)
C14—N1—C1—N2−5.42 (17)C4—C3—C8—C9−14.18 (16)
C4—N1—C1—C20.41 (12)C2—C3—C8—C9164.89 (11)
C14—N1—C1—C2173.51 (10)C13—C8—C9—C100.00 (17)
N2—C1—C2—C6−0.04 (16)C3—C8—C9—C10179.50 (11)
N1—C1—C2—C6−178.89 (9)C8—C9—C10—C110.3 (2)
N2—C1—C2—C3178.25 (10)C9—C10—C11—C12−0.5 (2)
N1—C1—C2—C3−0.60 (11)C10—C11—C12—C130.4 (2)
C1—C2—C3—C40.54 (11)C11—C12—C13—C8−0.2 (2)
C6—C2—C3—C4178.17 (12)C9—C8—C13—C12−0.05 (17)
C1—C2—C3—C8−178.67 (10)C3—C8—C13—C12−179.54 (11)
C6—C2—C3—C8−1.0 (2)C1—N1—C14—C1955.88 (16)
C1—N1—C4—C3−0.06 (13)C4—N1—C14—C19−132.14 (12)
C14—N1—C4—C3−173.33 (10)C1—N1—C14—C15−123.61 (12)
C2—C3—C4—N1−0.30 (12)C4—N1—C14—C1548.36 (16)
C8—C3—C4—N1178.97 (9)C19—C14—C15—C160.85 (18)
C1—N2—C5—N3−0.24 (15)N1—C14—C15—C16−179.66 (11)
C1—N2—C5—C7178.70 (10)C14—C15—C16—C17−0.88 (19)
C6—N3—C5—N2−0.17 (16)C20—O1—C17—C181.4 (2)
N4—N3—C5—N2−179.92 (10)C20—O1—C17—C16−179.88 (14)
C6—N3—C5—C7−179.15 (10)C15—C16—C17—O1−178.74 (12)
N4—N3—C5—C71.10 (16)C15—C16—C17—C180.1 (2)
N5—N6—C6—N3−0.22 (12)O1—C17—C18—C19179.42 (12)
N5—N6—C6—C2179.99 (12)C16—C17—C18—C190.70 (19)
N4—N3—C6—N60.42 (12)C15—C14—C19—C18−0.04 (18)
C5—N3—C6—N6−179.37 (10)N1—C14—C19—C18−179.52 (11)
N4—N3—C6—C2−179.74 (9)C17—C18—C19—C14−0.73 (19)
D—H···AD—HH···AD···AD—H···A
C13—H13···N60.952.383.2159 (18)146
C12—H12···O1i0.952.573.3902 (17)144
C7—H7B···Cg4ii0.962.903.620 (2)132
C7—H7C···Cg4iii0.962.693.554 (2)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯N60.952.383.2159 (18)146
C12—H12⋯O1i0.952.573.3902 (17)144
C7—H7BCg4ii0.962.903.620 (2)132
C7—H7CCg4iii0.962.693.554 (2)150

Symmetry codes: (i) ; (ii) ; (iii) . Cg4 is the centroid of the C8–C13. ring.

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 5-(4-chloro-phen-yl)-2-[(Z)-(methoxy-carbon-yl)methyl-ene]-7-methyl-3-oxo-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimi-dine-6-carboxyl-ate.

Authors:  Zhao-Hui Hou; Ning-Bo Zhou; Bin-Hong He; Xiao-Fang Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-23

3.  Ethyl 2-[(Z)-3-chloro-benzyl-idene]-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Mukesh M Jotani; Bharat B Baldaniya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-29

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  3 in total

1.  7-(4-Chloro-phen-yl)-9-phenyl-7H-pyrrolo[3,2-e]tetra-zolo[1,5-c]pyrimidine.

Authors:  Rina D Shah; Mukesh M Jotani; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

2.  12-(4-Methoxy-phen-yl)-10-phenyl-3,4,5,6,8,10-hexa-azatricyclo-[7.3.0.0]dodeca-1(9),2,4,7,11-penta-ene.

Authors:  Mukesh M Jotani; Rina D Shah; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

3.  12-(4-Chloro-phen-yl)-7-methyl-10-phenyl-3,4,5,6,8,10-hexa-aza-tricyclo-[7.3.0.0]dodeca-1(9),2,4,7,11-penta-ene.

Authors:  Rina D Shah; Mukesh M Jotani; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27
  3 in total

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