Literature DB >> 21589418

Dimethyl 3-phenyl-penta-nedioate.

Peng Zhang1, Feng Fu, Ni Wang.   

Abstract

In the title compound, C(13)H(16)O(4), the terminal carboxyl-ate groups are twisted to each other at a dihedral angle of 23.80 (9)°. Weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into supra-molecular chains along the a axis.

Entities:  

Year:  2010        PMID: 21589418      PMCID: PMC3011733          DOI: 10.1107/S1600536810041954

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For approximately extended structures of carbon skeleton in penta­nedioate compounds, see: Fun & Chantrapromma (2009 ▶); Karadayı (2008 ▶); Yang et al. (2008 ▶).

Experimental

Crystal data

C13H16O4 M = 236.26 Triclinic, a = 5.7944 (2) Å b = 8.7668 (3) Å c = 12.7591 (4) Å α = 92.609 (2)° β = 101.979 (2)° γ = 96.140 (2)° V = 628.86 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.32 × 0.26 × 0.13 mm

Data collection

Bruker SMART 1000 CCD diffractometer 8883 measured reflections 2207 independent reflections 1839 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.116 S = 1.07 2207 reflections 156 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810041954/xu5052sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041954/xu5052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16O4Z = 2
Mr = 236.26F(000) = 252
Triclinic, P1Dx = 1.248 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7944 (2) ÅCell parameters from 2207 reflections
b = 8.7668 (3) Åθ = 1.6–25.0°
c = 12.7591 (4) ŵ = 0.09 mm1
α = 92.609 (2)°T = 296 K
β = 101.979 (2)°Prism, colorless
γ = 96.140 (2)°0.32 × 0.26 × 0.13 mm
V = 628.86 (4) Å3
Bruker SMART 1000 CCD diffractometer1839 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
graphiteθmax = 25.0°, θmin = 1.6°
φ and ω scansh = −6→6
8883 measured reflectionsk = −9→10
2207 independent reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0636P)2 + 0.0827P] where P = (Fo2 + 2Fc2)/3
2207 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4786 (2)0.22914 (15)0.76660 (10)0.0402 (3)
C20.6254 (3)0.26207 (18)0.69556 (13)0.0551 (4)
H20.72990.19320.68330.066*
C30.6182 (3)0.3963 (2)0.64272 (13)0.0635 (5)
H30.71840.41690.59550.076*
C40.4658 (3)0.49892 (18)0.65906 (13)0.0579 (4)
H40.46100.58860.62290.069*
C50.3203 (3)0.46854 (17)0.72911 (13)0.0578 (4)
H50.21660.53820.74100.069*
C60.3263 (3)0.33451 (16)0.78254 (12)0.0496 (4)
H60.22610.31520.82990.060*
C70.4854 (2)0.08246 (15)0.82520 (11)0.0427 (3)
H70.36520.07990.86920.051*
C80.7273 (3)0.07618 (17)0.89975 (11)0.0488 (4)
H8A0.7261−0.02200.93190.059*
H8B0.84820.08130.85720.059*
C90.7936 (3)0.20195 (16)0.98715 (11)0.0463 (3)
C101.1203 (4)0.3609 (2)1.09571 (16)0.0793 (6)
H10A1.02430.44391.09310.119*
H10B1.28010.40071.09370.119*
H10C1.11990.31041.16090.119*
C110.4293 (2)−0.06163 (16)0.74809 (12)0.0487 (4)
H11A0.5381−0.05540.69960.058*
H11B0.4573−0.15070.78920.058*
C120.1809 (3)−0.08498 (16)0.68321 (12)0.0474 (3)
C13−0.0740 (4)−0.2120 (3)0.52859 (17)0.0895 (6)
H13A−0.1606−0.28650.56330.134*
H13B−0.0641−0.25490.45930.134*
H13C−0.1546−0.12180.52020.134*
O11.02509 (18)0.25234 (13)1.00486 (9)0.0591 (3)
O20.6623 (2)0.25035 (15)1.03815 (10)0.0713 (4)
O30.1625 (2)−0.17144 (14)0.59333 (9)0.0671 (3)
O40.0144 (2)−0.03577 (17)0.70777 (11)0.0850 (5)
U11U22U33U12U13U23
C10.0367 (7)0.0427 (7)0.0383 (7)0.0014 (6)0.0042 (5)−0.0019 (6)
C20.0524 (9)0.0602 (9)0.0589 (9)0.0142 (7)0.0209 (7)0.0101 (7)
C30.0660 (10)0.0697 (11)0.0601 (10)0.0054 (9)0.0240 (8)0.0175 (8)
C40.0665 (10)0.0476 (8)0.0548 (9)0.0017 (7)0.0033 (8)0.0099 (7)
C50.0613 (10)0.0451 (8)0.0673 (10)0.0143 (7)0.0109 (8)0.0005 (7)
C60.0500 (8)0.0464 (8)0.0549 (9)0.0067 (6)0.0167 (7)0.0011 (7)
C70.0403 (7)0.0432 (7)0.0441 (7)0.0044 (6)0.0085 (6)0.0010 (6)
C80.0484 (8)0.0486 (8)0.0477 (8)0.0108 (6)0.0041 (6)0.0026 (6)
C90.0467 (8)0.0503 (8)0.0414 (7)0.0086 (6)0.0061 (6)0.0080 (6)
C100.0702 (12)0.0790 (12)0.0741 (12)−0.0042 (10)−0.0060 (10)−0.0174 (10)
C110.0474 (8)0.0435 (8)0.0542 (8)0.0066 (6)0.0083 (7)−0.0007 (6)
C120.0487 (8)0.0417 (7)0.0511 (8)0.0011 (6)0.0120 (7)−0.0007 (6)
C130.0772 (13)0.0980 (15)0.0754 (13)−0.0134 (11)−0.0073 (10)−0.0194 (11)
O10.0474 (6)0.0657 (7)0.0592 (7)0.0014 (5)0.0048 (5)−0.0079 (5)
O20.0604 (7)0.0865 (9)0.0668 (7)0.0044 (6)0.0206 (6)−0.0181 (6)
O30.0603 (7)0.0713 (7)0.0625 (7)0.0036 (6)0.0047 (6)−0.0208 (6)
O40.0469 (7)0.1122 (11)0.0901 (9)0.0096 (7)0.0109 (6)−0.0360 (8)
C1—C61.3803 (18)C8—H8B0.9700
C1—C21.3855 (19)C9—O21.1962 (17)
C1—C71.5166 (18)C9—O11.3357 (18)
C2—C31.383 (2)C10—O11.441 (2)
C2—H20.9300C10—H10A0.9600
C3—C41.364 (2)C10—H10B0.9600
C3—H30.9300C10—H10C0.9600
C4—C51.366 (2)C11—C121.492 (2)
C4—H40.9300C11—H11A0.9700
C5—C61.385 (2)C11—H11B0.9700
C5—H50.9300C12—O41.1908 (18)
C6—H60.9300C12—O31.3244 (18)
C7—C111.5283 (19)C13—O31.444 (2)
C7—C81.5299 (19)C13—H13A0.9600
C7—H70.9800C13—H13B0.9600
C8—C91.492 (2)C13—H13C0.9600
C8—H8A0.9700
C6—C1—C2117.79 (13)C7—C8—H8B108.7
C6—C1—C7121.06 (12)H8A—C8—H8B107.6
C2—C1—C7121.15 (12)O2—C9—O1123.14 (14)
C3—C2—C1120.70 (14)O2—C9—C8125.79 (14)
C3—C2—H2119.7O1—C9—C8111.03 (12)
C1—C2—H2119.7O1—C10—H10A109.5
C4—C3—C2120.75 (15)O1—C10—H10B109.5
C4—C3—H3119.6H10A—C10—H10B109.5
C2—C3—H3119.6O1—C10—H10C109.5
C3—C4—C5119.34 (14)H10A—C10—H10C109.5
C3—C4—H4120.3H10B—C10—H10C109.5
C5—C4—H4120.3C12—C11—C7114.15 (11)
C4—C5—C6120.37 (14)C12—C11—H11A108.7
C4—C5—H5119.8C7—C11—H11A108.7
C6—C5—H5119.8C12—C11—H11B108.7
C1—C6—C5121.05 (14)C7—C11—H11B108.7
C1—C6—H6119.5H11A—C11—H11B107.6
C5—C6—H6119.5O4—C12—O3122.43 (15)
C1—C7—C11112.33 (11)O4—C12—C11125.58 (14)
C1—C7—C8111.83 (11)O3—C12—C11111.98 (12)
C11—C7—C8108.24 (11)O3—C13—H13A109.5
C1—C7—H7108.1O3—C13—H13B109.5
C11—C7—H7108.1H13A—C13—H13B109.5
C8—C7—H7108.1O3—C13—H13C109.5
C9—C8—C7114.04 (11)H13A—C13—H13C109.5
C9—C8—H8A108.7H13B—C13—H13C109.5
C7—C8—H8A108.7C9—O1—C10117.15 (13)
C9—C8—H8B108.7C12—O3—C13116.62 (14)
C6—C1—C2—C30.0 (2)C1—C7—C8—C961.88 (15)
C7—C1—C2—C3−179.85 (14)C11—C7—C8—C9−173.87 (12)
C1—C2—C3—C4−0.3 (3)C7—C8—C9—O240.5 (2)
C2—C3—C4—C50.5 (3)C7—C8—C9—O1−141.58 (13)
C3—C4—C5—C6−0.4 (3)C1—C7—C11—C12−66.14 (15)
C2—C1—C6—C50.1 (2)C8—C7—C11—C12169.91 (12)
C7—C1—C6—C5179.92 (14)C7—C11—C12—O4−24.7 (2)
C4—C5—C6—C10.1 (2)C7—C11—C12—O3156.52 (12)
C6—C1—C7—C11121.25 (14)O2—C9—O1—C105.2 (2)
C2—C1—C7—C11−58.94 (17)C8—C9—O1—C10−172.73 (14)
C6—C1—C7—C8−116.81 (14)O4—C12—O3—C13−3.8 (2)
C2—C1—C7—C862.99 (17)C11—C12—O3—C13175.03 (15)
D—H···AD—HH···AD···AD—H···A
C8—H8B···O4i0.972.533.3987 (19)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8B⋯O4i0.972.533.3987 (19)149

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A triclinic polymorph of hexa-nedioic acid.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

3.  Bis(4-pyridylmeth-yl) hexa-nedioate.

Authors:  Jin-Hui Yang; Jian-Min Zhang; Yan-Xue Chen; Jian-Zhi Diao; Zheng Peng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17

4.  Bis(2,6-diamino-pyridinium)-adipate-adipic acid-water (2/1/1/2).

Authors:  Nevzat Karadayı
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18
  4 in total

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