Literature DB >> 21582276

A triclinic polymorph of hexa-nedioic acid.

Hoong-Kun Fun, Suchada Chantrapromma.   

Abstract

Hexane-dioic acid (or adipic acid), C(6)H(10)O(4), crystallizes with two crystallographically independent half-mol-ecules in the asymmetric unit of the triclinic unit cell, space group P, as each mol-ecule lies across a crystallographic inversion centre. A monoclinic polymorph has been reported previously, most recently by Ranganathan, Kulkarni & Rao [J. Phys. Chem. A, (2003), 107, 6073-6081]. The mol-ecules adopt the expected zigzag structure and are linked via centrosymmetric pairs of O-H⋯O hydrogen bonds, forming infinite one-dimensional chains along [011]. These chains are stacked along the a axis. The crystal is further stabilized by weak C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21582276      PMCID: PMC2968612          DOI: 10.1107/S1600536809006448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see Allen et al. (1987 ▶). For related structures, see, for example: Ranganathan et al. (2003 ▶); Srinivasa Gopalan et al. (1999 ▶, 2000 ▶). For general background to the influence of hydrogen bonding on phase transitions, see, for example: Chantrapromma et al. (2006 ▶); Dunitz (1991 ▶); Fun et al. (2003 ▶, 2006 ▶); How et al. (2005 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H10O4 M = 146.14 Triclinic, a = 6.7666 (5) Å b = 6.9992 (5) Å c = 7.7180 (5) Å α = 93.794 (4)° β = 104.321 (4)° γ = 102.689 (4)° V = 342.70 (4) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.55 × 0.11 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.847, T max = 0.993 7773 measured reflections 1553 independent reflections 1419 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.094 S = 1.09 1553 reflections 91 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006448/sj2583sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006448/sj2583Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H10O4Z = 2
Mr = 146.14F(000) = 156
Triclinic, P1Dx = 1.416 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7666 (5) ÅCell parameters from 1553 reflections
b = 6.9992 (5) Åθ = 2.8–27.5°
c = 7.7180 (5) ŵ = 0.12 mm1
α = 93.794 (4)°T = 100 K
β = 104.321 (4)°Needle, colorless
γ = 102.689 (4)°0.55 × 0.11 × 0.06 mm
V = 342.70 (4) Å3
Bruker APEXII CCD area-detector diffractometer1553 independent reflections
Radiation source: sealed tube1419 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.847, Tmax = 0.993k = −9→9
7773 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0402P)2 + 0.1411P] where P = (Fo2 + 2Fc2)/3
1553 reflections(Δ/σ)max = 0.001
91 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.07345 (14)0.10624 (13)0.21778 (12)0.0182 (2)
O2A−0.11534 (14)0.20271 (13)−0.02751 (12)0.0198 (2)
H2OA−0.09610.1042−0.07790.030*
C1A−0.02548 (19)0.22010 (17)0.14771 (16)0.0156 (3)
C2A−0.0623 (2)0.39330 (18)0.24950 (16)0.0174 (3)
H2AA−0.21270.37870.22690.021*
H2AB−0.00570.51240.20260.021*
C3A0.03484 (19)0.41932 (17)0.45233 (16)0.0167 (3)
H3AA0.17940.44480.47770.020*
H3AB−0.01080.30120.49960.020*
O1B0.45905 (14)0.56597 (12)0.19844 (12)0.0189 (2)
O2B0.61849 (14)0.75868 (13)0.02759 (12)0.0204 (2)
H2OB0.59060.6539−0.03800.031*
C1B0.54652 (19)0.72852 (18)0.17064 (16)0.0159 (3)
C2B0.5885 (2)0.91565 (18)0.29479 (16)0.0173 (3)
H2BA0.54571.01600.22360.021*
H2BB0.73890.96030.34910.021*
C3B0.47841 (19)0.89970 (17)0.44459 (16)0.0161 (3)
H3BA0.52660.81060.52380.019*
H3BB0.33560.85190.39470.019*
U11U22U33U12U13U23
O1A0.0225 (5)0.0180 (4)0.0144 (4)0.0084 (4)0.0033 (3)−0.0012 (3)
O2A0.0287 (5)0.0185 (4)0.0129 (4)0.0113 (4)0.0033 (4)−0.0023 (3)
C1A0.0165 (6)0.0157 (6)0.0135 (6)0.0019 (4)0.0049 (4)−0.0014 (4)
C2A0.0218 (6)0.0156 (6)0.0151 (6)0.0066 (5)0.0044 (5)−0.0013 (5)
C3A0.0192 (6)0.0155 (6)0.0149 (6)0.0050 (5)0.0039 (5)−0.0021 (5)
O1B0.0248 (5)0.0160 (4)0.0166 (4)0.0050 (4)0.0078 (4)−0.0008 (3)
O2B0.0278 (5)0.0164 (4)0.0173 (5)0.0022 (4)0.0111 (4)−0.0034 (3)
C1B0.0157 (6)0.0177 (6)0.0140 (6)0.0056 (5)0.0028 (4)−0.0009 (5)
C2B0.0204 (6)0.0149 (6)0.0156 (6)0.0029 (5)0.0055 (5)−0.0028 (5)
C3B0.0185 (6)0.0150 (6)0.0138 (6)0.0034 (5)0.0039 (5)−0.0019 (5)
O1A—C1A1.2199 (15)O1B—C1B1.2207 (15)
O2A—C1A1.3237 (14)O2B—C1B1.3238 (15)
O2A—H2OA0.8200O2B—H2OB0.8200
C1A—C2A1.5007 (16)C1B—C2B1.5001 (16)
C2A—C3A1.5220 (16)C2B—C3B1.5201 (17)
C2A—H2AA0.9700C2B—H2BA0.9700
C2A—H2AB0.9700C2B—H2BB0.9700
C3A—C3Ai1.528 (2)C3B—C3Bii1.525 (2)
C3A—H3AA0.9222C3B—H3BA0.9537
C3A—H3AB0.9462C3B—H3BB0.9224
C1A—O2A—H2OA109.5C1B—O2B—H2OB109.5
O1A—C1A—O2A123.52 (11)O1B—C1B—O2B123.41 (11)
O1A—C1A—C2A124.18 (11)O1B—C1B—C2B124.33 (11)
O2A—C1A—C2A112.29 (10)O2B—C1B—C2B112.25 (10)
C1A—C2A—C3A114.73 (10)C1B—C2B—C3B115.27 (10)
C1A—C2A—H2AA108.6C1B—C2B—H2BA108.5
C3A—C2A—H2AA108.6C3B—C2B—H2BA108.5
C1A—C2A—H2AB108.6C1B—C2B—H2BB108.5
C3A—C2A—H2AB108.6C3B—C2B—H2BB108.5
H2AA—C2A—H2AB107.6H2BA—C2B—H2BB107.5
C2A—C3A—C3Ai111.19 (13)C2B—C3B—C3Bii110.83 (12)
C2A—C3A—H3AA110.2C2B—C3B—H3BA110.6
C3Ai—C3A—H3AA111.6C3Bii—C3B—H3BA108.1
C2A—C3A—H3AB109.9C2B—C3B—H3BB109.3
C3Ai—C3A—H3AB106.7C3Bii—C3B—H3BB109.7
H3AA—C3A—H3AB107.0H3BA—C3B—H3BB108.3
O1A—C1A—C2A—C3A0.07 (17)O1B—C1B—C2B—C3B−11.15 (18)
O2A—C1A—C2A—C3A179.19 (10)O2B—C1B—C2B—C3B169.89 (10)
C1A—C2A—C3A—C3Ai−172.28 (12)C1B—C2B—C3B—C3Bii−176.67 (13)
D—H···AD—HH···AD···AD—H···A
O2A—H2OA···O1Aiii0.821.822.6397 (13)172
O2B—H2OB···O1Biv0.821.822.6421 (13)174
C2A—H2AB···O2Av0.972.583.5415 (16)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2A—H2OA⋯O1Ai0.821.822.6397 (13)172
O2B—H2OB⋯O1Bii0.821.822.6421 (13)174
C2A—H2AB⋯O2Aiii0.972.583.5415 (16)171

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  3 in total

1.  Dimethyl 3-phenyl-penta-nedioate.

Authors:  Peng Zhang; Feng Fu; Ni Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

2.  Methyl 6-amino-6-oxohexa-noate.

Authors:  Tobias Gruber; Christopher J Schofield; Amber L Thompson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

3.  Modelling temperature-dependent properties of polymorphic organic molecular crystals.

Authors:  Jonas Nyman; Graeme M Day
Journal:  Phys Chem Chem Phys       Date:  2016-11-16       Impact factor: 3.676

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.