Literature DB >> 21202614

Bis(4-pyridylmeth-yl) hexa-nedioate.

Jin-Hui Yang, Jian-Min Zhang, Yan-Xue Chen, Jian-Zhi Diao, Zheng Peng.   

Abstract

The asymmetric unit of the title compound, C(18)H(20)N(2)O(4), contains one half-mol-ecule. The mol-ecule lies on an inversion centre and is roughly planar, the chains between the two pyridine rings being only slightly twisted, with torsion angles ranging from 170.9 (1) to 177.2 (1)°. Weak C-H⋯O hydrogen bonds result in the formation of a three-dimensional network.

Entities:  

Year:  2008        PMID: 21202614      PMCID: PMC2961555          DOI: 10.1107/S1600536808014414

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Banfi et al. (2002 ▶); Magden & Basel (1984 ▶).

Experimental

Crystal data

C18H20N2O4 M = 328.36 Monoclinic, a = 9.1489 (18) Å b = 10.164 (2) Å c = 8.9206 (18) Å β = 102.11 (3)° V = 811.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 113 (2) K 0.12 × 0.10 × 0.08 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.979, T max = 0.988 9823 measured reflections 1918 independent reflections 1288 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.106 S = 0.98 1918 reflections 109 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808014414/dn2349sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014414/dn2349Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20N2O4F000 = 348
Mr = 328.36Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2434 reflections
a = 9.1489 (18) Åθ = 2.3–27.9º
b = 10.164 (2) ŵ = 0.10 mm1
c = 8.9206 (18) ÅT = 113 (2) K
β = 102.11 (3)ºBlock, colorless
V = 811.1 (3) Å30.12 × 0.10 × 0.08 mm
Z = 2
Rigaku Saturn diffractometer1918 independent reflections
Radiation source: rotating anode1288 reflections with I > 2σ(I)
Monochromator: confocalRint = 0.060
T = 113(2) Kθmax = 27.9º
ω scansθmin = 2.3º
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)h = −12→12
Tmin = 0.979, Tmax = 0.988k = −13→13
9823 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.107  w = 1/[σ2(Fo2) + (0.0564P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
1918 reflectionsΔρmax = 0.34 e Å3
109 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.70599 (9)0.51214 (8)0.11415 (9)0.0198 (2)
O20.64123 (11)0.69241 (9)0.22847 (10)0.0307 (3)
N10.90646 (13)0.38939 (10)−0.35175 (12)0.0234 (3)
C10.89598 (14)0.58417 (13)−0.20251 (14)0.0219 (3)
H10.92180.6722−0.18540.026*
C20.93751 (15)0.51700 (13)−0.32073 (15)0.0226 (3)
H20.99010.5625−0.38280.027*
C30.83041 (15)0.32799 (13)−0.25920 (15)0.0250 (3)
H30.80820.2394−0.27730.030*
C40.78264 (14)0.38780 (13)−0.13832 (14)0.0221 (3)
H40.72970.3404−0.07810.026*
C50.81535 (14)0.51996 (12)−0.10895 (13)0.0184 (3)
C60.76640 (15)0.59800 (12)0.01395 (14)0.0206 (3)
H6A0.85090.64600.07270.025*
H6B0.69100.6614−0.03230.025*
C70.64740 (13)0.57452 (13)0.22139 (13)0.0188 (3)
C80.59372 (14)0.47965 (12)0.32611 (14)0.0200 (3)
H8A0.67510.42120.37070.024*
H8B0.51410.42640.26690.024*
C90.53658 (14)0.54786 (11)0.45402 (14)0.0196 (3)
H9A0.61930.59120.52190.023*
H9B0.46470.61480.41020.023*
U11U22U33U12U13U23
O10.0269 (5)0.0179 (5)0.0184 (5)0.0006 (4)0.0133 (4)0.0013 (4)
O20.0492 (7)0.0193 (5)0.0301 (6)−0.0007 (4)0.0230 (5)−0.0018 (4)
N10.0283 (6)0.0223 (6)0.0218 (6)0.0034 (5)0.0102 (5)−0.0005 (5)
C10.0242 (7)0.0193 (7)0.0236 (7)0.0012 (5)0.0081 (6)0.0020 (6)
C20.0244 (7)0.0263 (7)0.0197 (7)0.0016 (6)0.0106 (6)0.0040 (6)
C30.0288 (8)0.0211 (7)0.0263 (8)−0.0004 (6)0.0089 (6)−0.0040 (6)
C40.0235 (7)0.0249 (7)0.0199 (7)−0.0010 (5)0.0093 (6)0.0018 (6)
C50.0189 (6)0.0216 (7)0.0145 (6)0.0016 (5)0.0033 (5)0.0012 (5)
C60.0283 (7)0.0175 (7)0.0191 (7)−0.0018 (5)0.0122 (6)0.0023 (5)
C70.0199 (7)0.0208 (7)0.0168 (7)0.0002 (5)0.0062 (5)−0.0028 (6)
C80.0240 (7)0.0183 (6)0.0202 (7)−0.0005 (5)0.0106 (5)0.0010 (5)
C90.0220 (7)0.0204 (7)0.0187 (7)−0.0001 (5)0.0098 (6)0.0005 (6)
O1—C71.3489 (14)C4—H40.9300
O1—C61.4398 (14)C5—C61.4959 (17)
O2—C71.2019 (15)C6—H6A0.9700
N1—C31.3402 (16)C6—H6B0.9700
N1—C21.3441 (16)C7—C81.4954 (17)
C1—C21.3751 (17)C8—C91.5186 (17)
C1—C51.3874 (16)C8—H8A0.9700
C1—H10.9300C8—H8B0.9700
C2—H20.9300C9—C9i1.516 (2)
C3—C41.3860 (17)C9—H9A0.9700
C3—H30.9300C9—H9B0.9700
C4—C51.3891 (18)
C7—O1—C6114.63 (10)C5—C6—H6A109.6
C3—N1—C2115.92 (11)O1—C6—H6B109.6
C2—C1—C5119.68 (12)C5—C6—H6B109.6
C2—C1—H1120.2H6A—C6—H6B108.1
C5—C1—H1120.2O2—C7—O1122.40 (11)
N1—C2—C1123.82 (12)O2—C7—C8125.79 (11)
N1—C2—H2118.1O1—C7—C8111.80 (11)
C1—C2—H2118.1C7—C8—C9112.64 (10)
N1—C3—C4124.35 (12)C7—C8—H8A109.1
N1—C3—H3117.8C9—C8—H8A109.1
C4—C3—H3117.8C7—C8—H8B109.1
C3—C4—C5118.70 (11)C9—C8—H8B109.1
C3—C4—H4120.6H8A—C8—H8B107.8
C5—C4—H4120.6C9i—C9—C8111.98 (12)
C1—C5—C4117.52 (11)C9i—C9—H9A109.2
C1—C5—C6118.04 (11)C8—C9—H9A109.2
C4—C5—C6124.42 (11)C9i—C9—H9B109.2
O1—C6—C5110.27 (10)C8—C9—H9B109.2
O1—C6—H6A109.6H9A—C9—H9B107.9
C1—C5—C6—O1−170.85 (11)O1—C7—C8—C9176.27 (10)
C6—O1—C7—C8−177.17 (10)
D—H···AD—HH···AD···AD—H···A
C6—H6B···O2ii0.972.563.3333 (17)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6B⋯O2i0.972.563.3333 (17)137

Symmetry code: (i) .

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