Literature DB >> 22807733

Tetra-aqua-bis-[5-(pyridin-3-yl)tetra-zolido-κN⁵]manganese(II) tetra-hydrate.

Chen Qi, Xiang He, Min Shao, Ming-Xing Li.   

Abstract

The title compound, [Mn(C₆H₄N₅)₂(H₂O)₄]·4H₂O, was obtained by the solution reaction of MnCl₂ and 3-(2H-tetra-zol-5-yl)n class="Chemical">pyridine. The Mn(II) atom, located on an inversion center, shows a slightly distorted octa-hedral geometry and is coordinated by two pyridine N atoms from two 5-(pyridin-3-yl)tetra-zolide ligands occupying trans positions and four water mol-ecules. In the crystal, the mononuclear complex mol-ecules and solvent water mol-ecules are connected into a three-dimensional framework by O-H⋯N and O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22807733      PMCID: PMC3393165          DOI: 10.1107/S160053681202510X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structure of the isotypic zinc(II) complex [Zn(C6H4N5)2(H2O)4]·4H2O, see: Mu et al. (2010 ▶).

Experimental

Crystal data

[Mn(C6H4N5)2(H2O)4]·4H2O M = 491.35 Triclinic, a = 8.137 (8) Å b = 8.629 (8) Å c = 8.761 (8) Å α = 84.878 (10)° β = 65.347 (8)° γ = 72.571 (10)° V = 533.0 (9) Å3 Z = 1 Mo Kα radiation μ = 0.68 mm−1 T = 293 K 0.15 × 0.10 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.922, T max = 0.934 2785 measured reflections 1850 independent reflections 1712 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.080 S = 1.05 1850 reflections 143 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202510X/gk2497sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202510X/gk2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C6H4N5)2(H2O)4]·4H2OZ = 1
Mr = 491.35F(000) = 255
Triclinic, P1Dx = 1.531 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.137 (8) ÅCell parameters from 1565 reflections
b = 8.629 (8) Åθ = 2.5–27.3°
c = 8.761 (8) ŵ = 0.68 mm1
α = 84.878 (10)°T = 293 K
β = 65.347 (8)°Block, yellow
γ = 72.571 (10)°0.15 × 0.10 × 0.10 mm
V = 533.0 (9) Å3
Bruker APEXII CCD diffractometer1850 independent reflections
Radiation source: fine-focus sealed tube1712 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
phi and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)h = −7→9
Tmin = 0.922, Tmax = 0.934k = −6→10
2785 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0343P)2 + 0.2064P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1850 reflectionsΔρmax = 0.23 e Å3
143 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.063 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4972 (3)0.8406 (3)0.1955 (2)0.0309 (5)
H10.38630.83300.28440.037*
C20.5378 (3)0.7784 (2)0.0396 (2)0.0250 (4)
C30.7038 (3)0.7881 (3)−0.0919 (2)0.0312 (4)
H30.73690.7485−0.19930.037*
C40.8196 (3)0.8579 (3)−0.0606 (3)0.0367 (5)
H40.93260.8647−0.14680.044*
C50.7665 (3)0.9175 (2)0.0990 (3)0.0313 (4)
H50.84570.96430.11800.038*
C60.4027 (3)0.7086 (2)0.0214 (2)0.0253 (4)
Mn10.50001.00000.50000.02565 (17)
N10.6059 (2)0.9108 (2)0.22757 (19)0.0291 (4)
N20.2536 (2)0.6822 (2)0.1516 (2)0.0316 (4)
N30.1654 (2)0.6214 (2)0.0825 (2)0.0345 (4)
N40.2572 (2)0.6120 (2)−0.0813 (2)0.0335 (4)
N50.4088 (2)0.6669 (2)−0.12397 (19)0.0293 (4)
O10.4248 (2)1.25174 (18)0.44974 (18)0.0465 (4)
H1B0.34861.32880.52130.056*
H1A0.45871.29500.35480.056*
O20.79389 (19)0.99831 (18)0.44105 (18)0.0364 (4)
H2A0.87300.91730.45890.044*
H2B0.82291.08200.45260.044*
O30.0823 (2)0.75323 (18)0.49811 (18)0.0372 (4)
H3B0.09420.66960.55620.045*
H3A0.13460.71960.39580.045*
O40.1519 (2)0.48719 (18)0.69383 (17)0.0359 (4)
H4B0.06080.45190.75980.043*
H4A0.18550.52710.75750.043*
U11U22U33U12U13U23
C10.0302 (10)0.0403 (11)0.0217 (10)−0.0155 (9)−0.0058 (8)−0.0023 (8)
C20.0279 (10)0.0230 (9)0.0239 (10)−0.0064 (8)−0.0108 (8)−0.0002 (7)
C30.0317 (10)0.0378 (11)0.0216 (10)−0.0100 (9)−0.0071 (8)−0.0061 (8)
C40.0286 (10)0.0506 (13)0.0277 (11)−0.0162 (10)−0.0043 (8)−0.0034 (9)
C50.0277 (10)0.0374 (11)0.0320 (11)−0.0116 (8)−0.0134 (8)−0.0010 (9)
C60.0292 (10)0.0226 (9)0.0234 (10)−0.0065 (8)−0.0104 (8)−0.0011 (7)
Mn10.0264 (2)0.0299 (3)0.0210 (2)−0.00911 (17)−0.00862 (17)−0.00332 (16)
N10.0311 (9)0.0351 (9)0.0230 (8)−0.0125 (7)−0.0105 (7)−0.0017 (7)
N20.0307 (9)0.0386 (10)0.0264 (9)−0.0142 (7)−0.0091 (7)−0.0018 (7)
N30.0341 (9)0.0405 (10)0.0320 (9)−0.0165 (8)−0.0122 (7)−0.0018 (8)
N40.0370 (9)0.0370 (10)0.0314 (9)−0.0153 (8)−0.0152 (8)−0.0008 (7)
N50.0348 (9)0.0320 (9)0.0237 (9)−0.0141 (7)−0.0109 (7)−0.0014 (7)
O10.0623 (10)0.0321 (8)0.0252 (8)−0.0059 (7)−0.0044 (7)0.0003 (6)
O20.0302 (7)0.0385 (8)0.0429 (9)−0.0084 (6)−0.0166 (6)−0.0071 (6)
O30.0407 (8)0.0377 (8)0.0292 (8)−0.0113 (7)−0.0100 (6)−0.0011 (6)
O40.0401 (8)0.0413 (8)0.0273 (8)−0.0177 (7)−0.0094 (6)−0.0044 (6)
C1—N11.337 (3)Mn1—O2i2.222 (3)
C1—C21.382 (3)Mn1—O22.222 (3)
C1—H10.9300Mn1—N12.290 (3)
C2—C31.383 (3)Mn1—N1i2.290 (3)
C2—C61.468 (3)N2—N31.342 (2)
C3—C41.382 (3)N3—N41.309 (3)
C3—H30.9300N4—N51.349 (3)
C4—C51.377 (3)O1—H1B0.8500
C4—H40.9300O1—H1A0.8500
C5—N11.336 (3)O2—H2A0.8500
C5—H50.9300O2—H2B0.8501
C6—N51.331 (3)O3—H3B0.8500
C6—N21.338 (3)O3—H3A0.8501
Mn1—O12.132 (2)O4—H4B0.8500
Mn1—O1i2.132 (2)O4—H4A0.8501
N1—C1—C2124.70 (17)O1—Mn1—N195.02 (7)
N1—C1—H1117.6O1i—Mn1—N184.98 (7)
C2—C1—H1117.6O2i—Mn1—N192.50 (6)
C1—C2—C3117.48 (18)O2—Mn1—N187.50 (6)
C1—C2—C6118.90 (17)O1—Mn1—N1i84.98 (7)
C3—C2—C6123.61 (18)O1i—Mn1—N1i95.02 (7)
C4—C3—C2118.66 (19)O2i—Mn1—N1i87.50 (5)
C4—C3—H3120.7O2—Mn1—N1i92.50 (6)
C2—C3—H3120.7N1—Mn1—N1i179.999 (1)
C5—C4—C3119.62 (19)C5—N1—C1116.74 (18)
C5—C4—H4120.2C5—N1—Mn1127.06 (13)
C3—C4—H4120.2C1—N1—Mn1116.17 (13)
N1—C5—C4122.78 (19)C6—N2—N3104.94 (17)
N1—C5—H5118.6N4—N3—N2109.54 (17)
C4—C5—H5118.6N3—N4—N5109.28 (15)
N5—C6—N2111.27 (17)C6—N5—N4104.97 (15)
N5—C6—C2125.30 (17)Mn1—O1—H1B126.3
N2—C6—C2123.42 (17)Mn1—O1—H1A127.6
O1—Mn1—O1i180.0H1B—O1—H1A106.1
O1—Mn1—O2i88.59 (7)Mn1—O2—H2A122.5
O1i—Mn1—O2i91.41 (7)Mn1—O2—H2B123.2
O1—Mn1—O291.41 (7)H2A—O2—H2B106.1
O1i—Mn1—O288.59 (7)H3B—O3—H3A106.7
O2i—Mn1—O2180.000 (1)H4B—O4—H4A105.2
D—H···AD—HH···AD···AD—H···A
O1—H1B···O4ii0.851.942.783 (3)172
O1—H1A···N5iii0.851.912.731 (3)163
O2—H2A···O3iv0.851.992.836 (3)171
O2—H2B···O3i0.851.962.800 (3)169
O3—H3B···O40.851.962.803 (3)171
O3—H3A···N20.851.962.797 (3)170
O4—H4B···N3v0.852.032.878 (3)177
O4—H4A···N4vi0.852.002.849 (3)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1B⋯O4i 0.851.942.783 (3)172
O1—H1A⋯N5ii 0.851.912.731 (3)163
O2—H2A⋯O3iii 0.851.992.836 (3)171
O2—H2B⋯O3iv 0.851.962.800 (3)169
O3—H3B⋯O40.851.962.803 (3)171
O3—H3A⋯N20.851.962.797 (3)170
O4—H4B⋯N3v 0.852.032.878 (3)177
O4—H4A⋯N4vi 0.852.002.849 (3)176

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tetra-aqua-bis-[5-(3-pyrid-yl)tetra-zolido-κN]zinc(II) tetra-hydrate.

Authors:  Yi-Qiang Mu; Jun Zhao; Cai Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.