| Literature DB >> 21589162 |
Abstract
The title compound, C(8)H(11)N(3)O(4)·H(2)O, was synthesized by reaction of 2-azido-acetic acid and ethyl acetyl-acetate. In the crystal packing, mol-ecules are linked by strong inter-molecular O-H⋯N and O-H⋯O hydrogen bonds into double layers parallel to the ab plane.Entities:
Year: 2010 PMID: 21589162 PMCID: PMC3009125 DOI: 10.1107/S1600536810043813
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H11N3O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2099 reflections |
| θ = 2.7–27.5° | |
| µ = 0.11 mm−1 | |
| β = 92.050 (5)° | Prism, colourless |
| 0.35 × 0.32 × 0.28 mm | |
| Rigaku SCXmini diffractometer | 2490 independent reflections |
| Radiation source: fine-focus sealed tube | 1536 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.0°, θmin = 2.7° |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan ( | |
| 10958 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2490 reflections | (Δ/σ)max < 0.001 |
| 148 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.81442 (14) | −0.2524 (3) | 0.37722 (19) | 0.0552 (6) | |
| C2 | 0.87508 (14) | −0.2098 (3) | 0.44180 (18) | 0.0611 (7) | |
| H2A | 0.8554 | −0.1835 | 0.4991 | 0.073* | |
| H2B | 0.9059 | −0.3041 | 0.4502 | 0.073* | |
| C3 | 0.90266 (14) | 0.0868 (3) | 0.41202 (18) | 0.0557 (6) | |
| C4 | 0.83230 (16) | 0.1554 (4) | 0.4359 (3) | 0.0936 (12) | |
| H4A | 0.7981 | 0.1402 | 0.3871 | 0.140* | |
| H4B | 0.8376 | 0.2694 | 0.4481 | 0.140* | |
| H4C | 0.8156 | 0.1012 | 0.4880 | 0.140* | |
| C5 | 0.96537 (13) | 0.1568 (3) | 0.38496 (18) | 0.0542 (6) | |
| C6 | 0.98182 (15) | 0.3313 (3) | 0.3765 (2) | 0.0631 (7) | |
| N1 | 0.91816 (11) | −0.0742 (2) | 0.41279 (14) | 0.0552 (6) | |
| N2 | 0.98618 (12) | −0.1025 (3) | 0.38793 (17) | 0.0658 (6) | |
| N3 | 1.01479 (11) | 0.0386 (2) | 0.37055 (17) | 0.0629 (6) | |
| O1 | 0.77303 (11) | −0.3646 (2) | 0.41090 (13) | 0.0687 (6) | |
| H1 | 0.7401 | −0.3861 | 0.3750 | 0.103* | |
| O2 | 0.80534 (12) | −0.1933 (3) | 0.30435 (15) | 0.0828 (7) | |
| O3 | 0.93857 (12) | 0.4367 (2) | 0.38956 (19) | 0.0963 (8) | |
| O4 | 1.04841 (10) | 0.3565 (2) | 0.35401 (16) | 0.0787 (7) | |
| O1W | 0.66222 (12) | 0.5429 (3) | 0.31857 (17) | 0.1016 (9) | |
| H1E | 0.6157 | 0.5328 | 0.3366 | 0.152* | |
| H1F | 0.6724 | 0.4673 | 0.2751 | 0.152* | |
| C7 | 1.07274 (18) | 0.5254 (4) | 0.3491 (3) | 0.0975 (13) | |
| H7A | 1.0559 | 0.5733 | 0.2931 | 0.117* | |
| H7B | 1.0531 | 0.5877 | 0.3975 | 0.117* | |
| C8 | 1.1478 (2) | 0.5300 (5) | 0.3554 (4) | 0.1357 (19) | |
| H8A | 1.1645 | 0.4680 | 0.4063 | 0.204* | |
| H8B | 1.1635 | 0.6406 | 0.3620 | 0.204* | |
| H8C | 1.1669 | 0.4846 | 0.3022 | 0.204* |
| C1 | 0.0569 (15) | 0.0444 (13) | 0.0649 (16) | −0.0084 (11) | 0.0111 (12) | −0.0044 (12) |
| C2 | 0.0590 (16) | 0.0525 (15) | 0.0720 (17) | −0.0113 (12) | 0.0030 (13) | 0.0027 (13) |
| C3 | 0.0483 (14) | 0.0482 (14) | 0.0705 (16) | −0.0026 (11) | 0.0034 (12) | −0.0085 (12) |
| C4 | 0.0614 (19) | 0.068 (2) | 0.154 (3) | −0.0031 (16) | 0.031 (2) | −0.017 (2) |
| C5 | 0.0462 (14) | 0.0448 (13) | 0.0713 (16) | −0.0019 (11) | −0.0012 (12) | −0.0070 (12) |
| C6 | 0.0556 (16) | 0.0482 (14) | 0.085 (2) | −0.0050 (13) | −0.0067 (14) | −0.0044 (13) |
| N1 | 0.0482 (12) | 0.0445 (11) | 0.0729 (14) | −0.0073 (9) | 0.0042 (10) | −0.0021 (10) |
| N2 | 0.0493 (13) | 0.0470 (12) | 0.1013 (18) | −0.0040 (10) | 0.0066 (12) | 0.0008 (12) |
| N3 | 0.0462 (12) | 0.0470 (12) | 0.0956 (17) | −0.0039 (9) | 0.0059 (11) | −0.0033 (11) |
| O1 | 0.0652 (12) | 0.0675 (12) | 0.0739 (12) | −0.0251 (10) | 0.0078 (9) | −0.0006 (10) |
| O2 | 0.0906 (16) | 0.0848 (15) | 0.0724 (13) | −0.0321 (12) | −0.0074 (11) | 0.0157 (12) |
| O3 | 0.0744 (15) | 0.0479 (11) | 0.167 (2) | 0.0032 (11) | 0.0108 (15) | −0.0080 (13) |
| O4 | 0.0532 (11) | 0.0499 (11) | 0.1330 (19) | −0.0134 (9) | 0.0037 (11) | 0.0032 (11) |
| O1W | 0.0557 (13) | 0.122 (2) | 0.128 (2) | −0.0154 (12) | 0.0168 (13) | −0.0639 (16) |
| C7 | 0.075 (2) | 0.0488 (17) | 0.168 (4) | −0.0179 (15) | −0.011 (2) | 0.014 (2) |
| C8 | 0.095 (3) | 0.094 (3) | 0.216 (5) | −0.049 (2) | −0.031 (3) | 0.050 (3) |
| C1—O2 | 1.202 (3) | C6—O3 | 1.204 (3) |
| C1—O1 | 1.315 (3) | C6—O4 | 1.312 (3) |
| C1—C2 | 1.502 (4) | N1—N2 | 1.352 (3) |
| C2—N1 | 1.450 (3) | N2—N3 | 1.307 (3) |
| C2—H2A | 0.9700 | O1—H1 | 0.8200 |
| C2—H2B | 0.9700 | O4—C7 | 1.465 (3) |
| C3—N1 | 1.356 (3) | O1W—H1E | 0.9194 |
| C3—C5 | 1.375 (3) | O1W—H1F | 0.9251 |
| C3—C4 | 1.481 (4) | C7—C8 | 1.396 (5) |
| C4—H4A | 0.9600 | C7—H7A | 0.9700 |
| C4—H4B | 0.9600 | C7—H7B | 0.9700 |
| C4—H4C | 0.9600 | C8—H8A | 0.9600 |
| C5—N3 | 1.361 (3) | C8—H8B | 0.9600 |
| C5—C6 | 1.475 (3) | C8—H8C | 0.9600 |
| O2—C1—O1 | 124.6 (3) | O3—C6—C5 | 123.0 (3) |
| O2—C1—C2 | 124.7 (2) | O4—C6—C5 | 112.1 (2) |
| O1—C1—C2 | 110.7 (2) | N2—N1—C3 | 111.5 (2) |
| N1—C2—C1 | 113.4 (2) | N2—N1—C2 | 118.9 (2) |
| N1—C2—H2A | 108.9 | C3—N1—C2 | 129.4 (2) |
| C1—C2—H2A | 108.9 | N3—N2—N1 | 107.1 (2) |
| N1—C2—H2B | 108.9 | N2—N3—C5 | 108.7 (2) |
| C1—C2—H2B | 108.9 | C1—O1—H1 | 109.5 |
| H2A—C2—H2B | 107.7 | C6—O4—C7 | 117.3 (2) |
| N1—C3—C5 | 103.2 (2) | H1E—O1W—H1F | 111.4 |
| N1—C3—C4 | 124.1 (2) | C8—C7—O4 | 109.4 (3) |
| C5—C3—C4 | 132.7 (2) | C8—C7—H7A | 109.8 |
| C3—C4—H4A | 109.5 | O4—C7—H7A | 109.8 |
| C3—C4—H4B | 109.5 | C8—C7—H7B | 109.8 |
| H4A—C4—H4B | 109.5 | O4—C7—H7B | 109.8 |
| C3—C4—H4C | 109.5 | H7A—C7—H7B | 108.2 |
| H4A—C4—H4C | 109.5 | C7—C8—H8A | 109.5 |
| H4B—C4—H4C | 109.5 | C7—C8—H8B | 109.5 |
| N3—C5—C3 | 109.4 (2) | H8A—C8—H8B | 109.5 |
| N3—C5—C6 | 122.6 (2) | C7—C8—H8C | 109.5 |
| C3—C5—C6 | 127.9 (2) | H8A—C8—H8C | 109.5 |
| O3—C6—O4 | 124.8 (3) | H8B—C8—H8C | 109.5 |
| O2—C1—C2—N1 | 7.1 (4) | C5—C3—N1—C2 | 175.1 (3) |
| O1—C1—C2—N1 | −173.6 (2) | C4—C3—N1—C2 | −5.1 (4) |
| N1—C3—C5—N3 | 0.2 (3) | C1—C2—N1—N2 | −110.4 (3) |
| C4—C3—C5—N3 | −179.6 (3) | C1—C2—N1—C3 | 74.9 (3) |
| N1—C3—C5—C6 | −176.4 (3) | C3—N1—N2—N3 | −0.4 (3) |
| C4—C3—C5—C6 | 3.8 (5) | C2—N1—N2—N3 | −176.0 (2) |
| N3—C5—C6—O3 | −179.6 (3) | N1—N2—N3—C5 | 0.5 (3) |
| C3—C5—C6—O3 | −3.4 (5) | C3—C5—N3—N2 | −0.4 (3) |
| N3—C5—C6—O4 | −0.1 (4) | C6—C5—N3—N2 | 176.4 (3) |
| C3—C5—C6—O4 | 176.1 (3) | O3—C6—O4—C7 | 3.4 (5) |
| C5—C3—N1—N2 | 0.1 (3) | C5—C6—O4—C7 | −176.1 (3) |
| C4—C3—N1—N2 | 179.9 (3) | C6—O4—C7—C8 | 159.6 (4) |
| H··· | ||||
| O1W—H1F···O2i | 0.93 | 1.84 | 2.759 (3) | 176 |
| O1W—H1E···N3ii | 0.92 | 1.96 | 2.879 (3) | 173 |
| O1—H1···O1Wiii | 0.82 | 1.75 | 2.558 (3) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.93 | 1.84 | 2.759 (3) | 176 |
| O1 | 0.92 | 1.96 | 2.879 (3) | 173 |
| O1—H1⋯O1 | 0.82 | 1.75 | 2.558 (3) | 167 |
Symmetry codes: (i) ; (ii) ; (iii) .