| Literature DB >> 21201814 |
Jin Rui Lin1, Ji Yuan Yao, Hong Zhao.
Abstract
The title compound, C(10)H(9)N(3)O(2), was synthesized from azido-benzene and ethyl acetyl-acetate. A pair of hydrogen bonds [2.617 (2) Å] inter-connects a pair of the carboxyl groups, forming an R(2) (2)(8) inversion dimer, a frequent motif in carboxylic acids. In the title structure, the bonding H atom in the aforementioned O-H⋯O hydrogen bond is significantly shifted towards the acceptor O atom [the donor and acceptor O-H distances are 1.25 (4) and 1.38 (4) Å, respectively]. A plot of the O⋯O versus O-H distances in compounds with paired carboxyl groups shows that the title structure belongs to the group of structures with abnormally long O-H distances with regard to the O⋯O contacts. The displacement of the bonding H atom towards the centre of the hydrogen bond is concomitant with more equal C-O bonding distances in the carboxyl group.Entities:
Year: 2008 PMID: 21201814 PMCID: PMC2960561 DOI: 10.1107/S1600536808027311
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H9N3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2025 reflections |
| θ = 2.8–27.5º | |
| µ = 0.09 mm−1 | |
| β = 113.18 (3)º | Prism, colourless |
| 0.20 × 0.18 × 0.15 mm | |
| Rigaku SCXmini diffractometer | 2400 independent reflections |
| Radiation source: fine-focus sealed tube | 1583 reflections with |
| Monochromator: graphite | |
| θmax = 27.5º | |
| ω scans | θmin = 2.8º |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 10370 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2400 reflections | Δρmax = 0.14 e Å−3 |
| 141 parameters | Δρmin = −0.18 e Å−3 |
| 31 constraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.41473 (10) | 0.1278 (3) | 0.72134 (18) | 0.0555 (5) | |
| C2 | 0.34886 (9) | 0.1172 (3) | 0.69727 (16) | 0.0491 (5) | |
| C3 | 0.31868 (9) | 0.1493 (2) | 0.76949 (15) | 0.0461 (5) | |
| C4 | 0.20319 (9) | 0.1379 (2) | 0.72119 (16) | 0.0466 (5) | |
| C5 | 0.20037 (10) | 0.0713 (3) | 0.82132 (17) | 0.0538 (5) | |
| H5 | 0.2350 | 0.0218 | 0.8780 | 0.065* | |
| C6 | 0.14517 (11) | 0.0799 (3) | 0.8352 (2) | 0.0655 (6) | |
| H6 | 0.1426 | 0.0364 | 0.9020 | 0.079* | |
| C7 | 0.09414 (11) | 0.1525 (3) | 0.7506 (2) | 0.0761 (7) | |
| H7 | 0.0571 | 0.1574 | 0.7603 | 0.091* | |
| C8 | 0.09745 (10) | 0.2184 (3) | 0.6509 (2) | 0.0734 (7) | |
| H8 | 0.0626 | 0.2666 | 0.5940 | 0.088* | |
| C9 | 0.15210 (9) | 0.2129 (3) | 0.63569 (18) | 0.0578 (5) | |
| H9 | 0.1547 | 0.2585 | 0.5695 | 0.069* | |
| C10 | 0.34155 (10) | 0.2068 (3) | 0.89199 (16) | 0.0579 (6) | |
| H10A | 0.3099 | 0.2716 | 0.9041 | 0.087* | |
| H10B | 0.3773 | 0.2786 | 0.9091 | 0.087* | |
| H10C | 0.3522 | 0.1073 | 0.9417 | 0.087* | |
| N1 | 0.30730 (8) | 0.0743 (2) | 0.58988 (14) | 0.0577 (5) | |
| N2 | 0.25230 (8) | 0.0763 (2) | 0.59058 (13) | 0.0571 (5) | |
| N3 | 0.25867 (7) | 0.1228 (2) | 0.70044 (13) | 0.0475 (4) | |
| O1 | 0.45271 (7) | 0.1465 (2) | 0.82345 (13) | 0.0733 (5) | |
| O2 | 0.43008 (7) | 0.1161 (3) | 0.63484 (13) | 0.0799 (6) | |
| H2 | 0.4867 (19) | 0.125 (5) | 0.661 (3) | 0.193 (17)* |
| C1 | 0.0557 (12) | 0.0670 (14) | 0.0444 (12) | 0.0033 (10) | 0.0201 (10) | 0.0024 (10) |
| C2 | 0.0508 (11) | 0.0572 (12) | 0.0404 (11) | 0.0029 (9) | 0.0190 (9) | 0.0016 (8) |
| C3 | 0.0505 (11) | 0.0472 (11) | 0.0407 (10) | 0.0013 (8) | 0.0182 (9) | 0.0020 (8) |
| C4 | 0.0488 (10) | 0.0506 (11) | 0.0416 (11) | −0.0023 (9) | 0.0190 (9) | −0.0050 (8) |
| C5 | 0.0562 (12) | 0.0617 (13) | 0.0443 (11) | −0.0008 (9) | 0.0206 (10) | −0.0031 (9) |
| C6 | 0.0660 (14) | 0.0826 (16) | 0.0573 (14) | −0.0081 (12) | 0.0343 (12) | −0.0071 (11) |
| C7 | 0.0548 (14) | 0.102 (2) | 0.0797 (17) | −0.0006 (13) | 0.0350 (14) | −0.0096 (15) |
| C8 | 0.0528 (13) | 0.0884 (18) | 0.0717 (16) | 0.0117 (12) | 0.0165 (12) | 0.0013 (13) |
| C9 | 0.0566 (13) | 0.0654 (14) | 0.0481 (12) | 0.0046 (10) | 0.0169 (10) | 0.0026 (10) |
| C10 | 0.0580 (12) | 0.0714 (15) | 0.0429 (11) | −0.0024 (10) | 0.0184 (10) | −0.0071 (10) |
| N1 | 0.0544 (10) | 0.0770 (12) | 0.0430 (10) | 0.0019 (9) | 0.0208 (8) | −0.0018 (8) |
| N2 | 0.0567 (11) | 0.0774 (13) | 0.0381 (9) | −0.0015 (8) | 0.0196 (8) | −0.0064 (8) |
| N3 | 0.0505 (9) | 0.0554 (10) | 0.0372 (8) | 0.0005 (7) | 0.0178 (7) | −0.0002 (7) |
| O1 | 0.0532 (9) | 0.1133 (14) | 0.0506 (9) | −0.0020 (8) | 0.0176 (8) | −0.0084 (8) |
| O2 | 0.0585 (10) | 0.1372 (16) | 0.0504 (9) | 0.0041 (9) | 0.0282 (8) | 0.0032 (9) |
| C1—O1 | 1.254 (2) | C6—H6 | 0.9300 |
| C1—O2 | 1.281 (2) | C7—C8 | 1.386 (3) |
| C1—C2 | 1.465 (3) | C7—H7 | 0.9300 |
| C2—N1 | 1.364 (3) | C8—C9 | 1.378 (3) |
| C2—C3 | 1.382 (3) | C8—H8 | 0.9300 |
| C3—N3 | 1.356 (2) | C9—H9 | 0.9300 |
| C3—C10 | 1.489 (3) | C10—H10A | 0.9600 |
| C4—C5 | 1.389 (3) | C10—H10B | 0.9600 |
| C4—C9 | 1.389 (3) | C10—H10C | 0.9600 |
| C4—N3 | 1.438 (2) | N1—N2 | 1.302 (2) |
| C5—C6 | 1.384 (3) | N2—N3 | 1.380 (2) |
| C5—H5 | 0.9300 | O2—H2 | 1.25 (4) |
| C6—C7 | 1.376 (3) | ||
| O1—C1—O2 | 123.66 (19) | C8—C7—H7 | 119.7 |
| O1—C1—C2 | 119.41 (19) | C9—C8—C7 | 120.3 (2) |
| O2—C1—C2 | 116.94 (19) | C9—C8—H8 | 119.8 |
| N1—C2—C3 | 109.96 (17) | C7—C8—H8 | 119.8 |
| N1—C2—C1 | 120.64 (17) | C8—C9—C4 | 118.7 (2) |
| C3—C2—C1 | 129.38 (19) | C8—C9—H9 | 120.7 |
| N3—C3—C2 | 103.29 (16) | C4—C9—H9 | 120.7 |
| N3—C3—C10 | 124.88 (17) | C3—C10—H10A | 109.5 |
| C2—C3—C10 | 131.79 (18) | C3—C10—H10B | 109.5 |
| C5—C4—C9 | 121.47 (19) | H10A—C10—H10B | 109.5 |
| C5—C4—N3 | 120.56 (18) | C3—C10—H10C | 109.5 |
| C9—C4—N3 | 117.90 (17) | H10A—C10—H10C | 109.5 |
| C6—C5—C4 | 118.8 (2) | H10B—C10—H10C | 109.5 |
| C6—C5—H5 | 120.6 | N2—N1—C2 | 108.68 (15) |
| C4—C5—H5 | 120.6 | N1—N2—N3 | 107.15 (15) |
| C7—C6—C5 | 120.2 (2) | C3—N3—N2 | 110.92 (15) |
| C7—C6—H6 | 119.9 | C3—N3—C4 | 131.92 (16) |
| C5—C6—H6 | 119.9 | N2—N3—C4 | 117.15 (15) |
| C6—C7—C8 | 120.5 (2) | C1—O2—H2 | 113.8 (15) |
| C6—C7—H7 | 119.7 |
| H··· | ||||
| O2—H2···O1i | 1.25 (4) | 1.38 (4) | 2.617 (2) | 173 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O1i | 1.25 (4) | 1.38 (4) | 2.617 (2) | 173 (3) |
Symmetry code: (i) .