Literature DB >> 21588934

N-(4-Bromo-phen-yl)pyrazine-2-carbox-amide.

Marcelle de Lima Ferreira, Marcus V N de Souza, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

The mol-ecule of the title compound, C(11)H(8)BrN(3)O, is close to planar (r.m.s. deviation of all 16 non-H atoms = 0.103 Å), a conformation stabilized by an intra-molecular N-H⋯N hydrogen bond, which generates an S(5) ring. In the crystal structure, supra-molecular chains mediated by C-H⋯O contacts (along a) are linked into a double layer via N⋯Br halogen bonds [3.207 (5) Å] and C-Br⋯π inter-actions [Br⋯ring centroid(pyrazine) = 3.446 (3) Å]. The layers stack along the b axis via weak π-π inter-actions [ring centroid(pyrazine)⋯ring centroid(benzene) distance = 3.803 (4) Å].

Entities:  

Year:  2010        PMID: 21588934      PMCID: PMC3009118          DOI: 10.1107/S1600536810039036

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­mycobacterial activity of pyrazinamide, see: Chaisson et al. (2002 ▶); Gordin et al. (2000 ▶); de Souza (2006 ▶). For structural studies of pyrazinamide derivatives; see: Baddeley et al. (2009 ▶); Howie et al. (2010a ▶,b ▶,c ▶,d ▶). For the synthesis, see: Wardell et al. (2008 ▶); Vontor et al. (1989 ▶). For background to halogen bonding, see: Metrangolo et al. (2008 ▶); Pennington et al. (2008 ▶). For graph-set nomenclature of hydrogen bonds, see: Bernstein et al. (1995 ▶). For details of software used to analyse the shape of the mol­ecule, see: Spek (2009 ▶).

Experimental

Crystal data

C11H8BrN3O M = 278.11 Triclinic, a = 5.8396 (4) Å b = 7.3317 (7) Å c = 13.3362 (12) Å α = 101.670 (4)° β = 96.728 (5)° γ = 110.524 (5)° V = 512.55 (8) Å3 Z = 2 Mo Kα radiation μ = 3.99 mm−1 T = 120 K 0.18 × 0.10 × 0.02 mm

Data collection

Enraf–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.764, T max = 1.000 8923 measured reflections 2110 independent reflections 1792 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.163 S = 1.18 2110 reflections 148 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.52 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039036/hb5661sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039036/hb5661Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8BrN3OZ = 2
Mr = 278.11F(000) = 276
Triclinic, P1Dx = 1.802 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8396 (4) ÅCell parameters from 22175 reflections
b = 7.3317 (7) Åθ = 2.9–27.5°
c = 13.3362 (12) ŵ = 3.99 mm1
α = 101.670 (4)°T = 120 K
β = 96.728 (5)°Plate, colourless
γ = 110.524 (5)°0.18 × 0.10 × 0.02 mm
V = 512.55 (8) Å3
Enraf–Nonius KappaCCD diffractometer2110 independent reflections
Radiation source: Enraf–Nonius FR591 rotating anode1792 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.078
Detector resolution: 9.091 pixels mm-1θmax = 26.5°, θmin = 3.1°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −9→9
Tmin = 0.764, Tmax = 1.000l = −16→16
8923 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H atoms treated by a mixture of independent and constrained refinement
S = 1.18w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2110 reflections(Δ/σ)max = 0.001
148 parametersΔρmax = 0.55 e Å3
1 restraintΔρmin = −0.52 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.20472 (10)0.24870 (9)−0.39064 (4)0.0227 (2)
O10.8942 (7)0.2880 (7)0.0884 (3)0.0259 (10)
N10.4828 (9)0.2414 (8)0.0622 (4)0.0204 (10)
H1N0.366 (9)0.234 (10)0.099 (5)0.024*
N20.9106 (9)0.2715 (8)0.3965 (4)0.0223 (11)
N30.4723 (9)0.2202 (8)0.2621 (4)0.0212 (11)
C10.6982 (10)0.2603 (8)0.1192 (4)0.0193 (12)
C20.4304 (10)0.2444 (8)−0.0435 (4)0.0170 (11)
C30.1796 (10)0.1859 (9)−0.0902 (5)0.0211 (12)
H30.05310.1461−0.05120.025*
C40.1156 (10)0.1861 (9)−0.1937 (5)0.0215 (12)
H4−0.05490.1452−0.22570.026*
C50.2979 (11)0.2453 (8)−0.2498 (5)0.0192 (12)
C60.5492 (11)0.3087 (9)−0.2035 (5)0.0210 (12)
H60.67450.3519−0.24270.025*
C70.6156 (11)0.3088 (9)−0.1011 (5)0.0205 (12)
H70.78680.3525−0.06940.025*
C80.6915 (11)0.2522 (9)0.2304 (4)0.0203 (12)
C90.9064 (11)0.2777 (9)0.2980 (5)0.0198 (12)
H91.05650.30040.27240.024*
C100.6933 (11)0.2377 (10)0.4279 (5)0.0229 (13)
H100.68700.23030.49790.028*
C110.4790 (11)0.2134 (10)0.3620 (5)0.0243 (13)
H110.33000.19090.38830.029*
U11U22U33U12U13U23
Br10.0268 (4)0.0286 (4)0.0140 (3)0.0123 (3)0.0025 (2)0.0066 (2)
O10.021 (2)0.040 (3)0.019 (2)0.0123 (19)0.0067 (17)0.010 (2)
N10.018 (2)0.031 (3)0.013 (2)0.011 (2)0.0028 (18)0.005 (2)
N20.022 (2)0.030 (3)0.020 (3)0.013 (2)0.003 (2)0.012 (2)
N30.018 (2)0.024 (3)0.017 (3)0.005 (2)0.0011 (19)0.004 (2)
C10.020 (3)0.015 (3)0.019 (3)0.005 (2)0.003 (2)0.002 (2)
C20.025 (3)0.017 (3)0.008 (3)0.006 (2)0.003 (2)0.005 (2)
C30.016 (3)0.026 (3)0.020 (3)0.008 (2)0.005 (2)0.004 (2)
C40.019 (3)0.027 (3)0.019 (3)0.011 (2)0.002 (2)0.004 (2)
C50.026 (3)0.016 (3)0.018 (3)0.011 (2)0.005 (2)0.007 (2)
C60.023 (3)0.026 (3)0.017 (3)0.011 (2)0.009 (2)0.008 (2)
C70.018 (3)0.023 (3)0.021 (3)0.007 (2)0.000 (2)0.010 (2)
C80.026 (3)0.022 (3)0.015 (3)0.011 (2)0.004 (2)0.004 (2)
C90.022 (3)0.020 (3)0.019 (3)0.010 (2)0.007 (2)0.004 (2)
C100.029 (3)0.034 (3)0.013 (3)0.014 (3)0.012 (2)0.013 (2)
C110.024 (3)0.033 (3)0.021 (3)0.012 (3)0.014 (3)0.012 (3)
Br1—C51.901 (6)C3—H30.9500
O1—C11.226 (6)C4—C51.369 (8)
N1—C11.337 (7)C4—H40.9500
N1—C21.413 (7)C5—C61.394 (8)
N1—H1N0.88 (6)C6—C71.375 (8)
N2—C91.321 (8)C6—H60.9500
N2—C101.339 (8)C7—H70.9500
N3—C111.340 (8)C8—C91.387 (8)
N3—C81.352 (8)C9—H90.9500
C1—C81.501 (8)C10—C111.376 (8)
C2—C31.398 (8)C10—H100.9500
C2—C71.402 (8)C11—H110.9500
C3—C41.387 (8)
C1—N1—C2128.5 (5)C6—C5—Br1120.2 (4)
C1—N1—H1N113 (5)C7—C6—C5120.0 (5)
C2—N1—H1N119 (5)C7—C6—H6120.0
C9—N2—C10116.0 (5)C5—C6—H6120.0
C11—N3—C8115.2 (5)C6—C7—C2120.0 (5)
O1—C1—N1125.4 (6)C6—C7—H7120.0
O1—C1—C8119.5 (5)C2—C7—H7120.0
N1—C1—C8115.1 (5)N3—C8—C9121.6 (5)
C3—C2—C7119.4 (5)N3—C8—C1118.2 (5)
C3—C2—N1117.1 (5)C9—C8—C1120.2 (5)
C7—C2—N1123.5 (5)N2—C9—C8122.6 (5)
C4—C3—C2120.0 (5)N2—C9—H9118.7
C4—C3—H3120.0C8—C9—H9118.7
C2—C3—H3120.0N2—C10—C11122.1 (5)
C5—C4—C3120.1 (5)N2—C10—H10119.0
C5—C4—H4120.0C11—C10—H10119.0
C3—C4—H4120.0N3—C11—C10122.6 (5)
C4—C5—C6120.6 (6)N3—C11—H11118.7
C4—C5—Br1119.1 (4)C10—C11—H11118.7
C2—N1—C1—O11.4 (10)N1—C2—C7—C6−179.5 (6)
C2—N1—C1—C8179.5 (5)C11—N3—C8—C9−0.6 (8)
C1—N1—C2—C3169.0 (5)C11—N3—C8—C1179.6 (5)
C1—N1—C2—C7−13.3 (9)O1—C1—C8—N3−179.6 (5)
C7—C2—C3—C42.0 (9)N1—C1—C8—N32.2 (8)
N1—C2—C3—C4179.8 (5)O1—C1—C8—C90.6 (8)
C2—C3—C4—C5−0.6 (9)N1—C1—C8—C9−177.6 (5)
C3—C4—C5—C6−1.0 (9)C10—N2—C9—C80.4 (9)
C3—C4—C5—Br1−178.8 (4)N3—C8—C9—N20.3 (9)
C4—C5—C6—C71.2 (9)C1—C8—C9—N2−179.9 (5)
Br1—C5—C6—C7179.0 (4)C9—N2—C10—C11−0.8 (9)
C5—C6—C7—C20.2 (9)C8—N3—C11—C100.2 (9)
C3—C2—C7—C6−1.8 (9)N2—C10—C11—N30.5 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.88 (6)2.22 (6)2.708 (7)115 (5)
C3—H3···O1i0.952.393.177 (8)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N30.88 (6)2.22 (6)2.708 (7)115 (5)
C3—H3⋯O1i0.952.393.177 (8)140

Symmetry code: (i) .

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