| Literature DB >> 21588934 |
Marcelle de Lima Ferreira, Marcus V N de Souza, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.
Abstract
The mol-ecule of the title compound, C(11)H(8)BrN(3)O, is close to planar (r.m.s. deviation of all 16 non-H atoms = 0.103 Å), a conformation stabilized by an intra-molecular N-H⋯N hydrogen bond, which generates an S(5) ring. In the crystal structure, supra-molecular chains mediated by C-H⋯O contacts (along a) are linked into a double layer via N⋯Br halogen bonds [3.207 (5) Å] and C-Br⋯π inter-actions [Br⋯ring centroid(pyrazine) = 3.446 (3) Å]. The layers stack along the b axis via weak π-π inter-actions [ring centroid(pyrazine)⋯ring centroid(benzene) distance = 3.803 (4) Å].Entities:
Year: 2010 PMID: 21588934 PMCID: PMC3009118 DOI: 10.1107/S1600536810039036
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H8BrN3O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 22175 reflections | |
| θ = 2.9–27.5° | |
| µ = 3.99 mm−1 | |
| α = 101.670 (4)° | |
| β = 96.728 (5)° | Plate, colourless |
| γ = 110.524 (5)° | 0.18 × 0.10 × 0.02 mm |
| Enraf–Nonius KappaCCD diffractometer | 2110 independent reflections |
| Radiation source: Enraf–Nonius FR591 rotating anode | 1792 reflections with |
| 10 cm confocal mirrors | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 26.5°, θmin = 3.1° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 8923 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2110 reflections | (Δ/σ)max = 0.001 |
| 148 parameters | Δρmax = 0.55 e Å−3 |
| 1 restraint | Δρmin = −0.52 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.20472 (10) | 0.24870 (9) | −0.39064 (4) | 0.0227 (2) | |
| O1 | 0.8942 (7) | 0.2880 (7) | 0.0884 (3) | 0.0259 (10) | |
| N1 | 0.4828 (9) | 0.2414 (8) | 0.0622 (4) | 0.0204 (10) | |
| H1N | 0.366 (9) | 0.234 (10) | 0.099 (5) | 0.024* | |
| N2 | 0.9106 (9) | 0.2715 (8) | 0.3965 (4) | 0.0223 (11) | |
| N3 | 0.4723 (9) | 0.2202 (8) | 0.2621 (4) | 0.0212 (11) | |
| C1 | 0.6982 (10) | 0.2603 (8) | 0.1192 (4) | 0.0193 (12) | |
| C2 | 0.4304 (10) | 0.2444 (8) | −0.0435 (4) | 0.0170 (11) | |
| C3 | 0.1796 (10) | 0.1859 (9) | −0.0902 (5) | 0.0211 (12) | |
| H3 | 0.0531 | 0.1461 | −0.0512 | 0.025* | |
| C4 | 0.1156 (10) | 0.1861 (9) | −0.1937 (5) | 0.0215 (12) | |
| H4 | −0.0549 | 0.1452 | −0.2257 | 0.026* | |
| C5 | 0.2979 (11) | 0.2453 (8) | −0.2498 (5) | 0.0192 (12) | |
| C6 | 0.5492 (11) | 0.3087 (9) | −0.2035 (5) | 0.0210 (12) | |
| H6 | 0.6745 | 0.3519 | −0.2427 | 0.025* | |
| C7 | 0.6156 (11) | 0.3088 (9) | −0.1011 (5) | 0.0205 (12) | |
| H7 | 0.7868 | 0.3525 | −0.0694 | 0.025* | |
| C8 | 0.6915 (11) | 0.2522 (9) | 0.2304 (4) | 0.0203 (12) | |
| C9 | 0.9064 (11) | 0.2777 (9) | 0.2980 (5) | 0.0198 (12) | |
| H9 | 1.0565 | 0.3004 | 0.2724 | 0.024* | |
| C10 | 0.6933 (11) | 0.2377 (10) | 0.4279 (5) | 0.0229 (13) | |
| H10 | 0.6870 | 0.2303 | 0.4979 | 0.028* | |
| C11 | 0.4790 (11) | 0.2134 (10) | 0.3620 (5) | 0.0243 (13) | |
| H11 | 0.3300 | 0.1909 | 0.3883 | 0.029* |
| Br1 | 0.0268 (4) | 0.0286 (4) | 0.0140 (3) | 0.0123 (3) | 0.0025 (2) | 0.0066 (2) |
| O1 | 0.021 (2) | 0.040 (3) | 0.019 (2) | 0.0123 (19) | 0.0067 (17) | 0.010 (2) |
| N1 | 0.018 (2) | 0.031 (3) | 0.013 (2) | 0.011 (2) | 0.0028 (18) | 0.005 (2) |
| N2 | 0.022 (2) | 0.030 (3) | 0.020 (3) | 0.013 (2) | 0.003 (2) | 0.012 (2) |
| N3 | 0.018 (2) | 0.024 (3) | 0.017 (3) | 0.005 (2) | 0.0011 (19) | 0.004 (2) |
| C1 | 0.020 (3) | 0.015 (3) | 0.019 (3) | 0.005 (2) | 0.003 (2) | 0.002 (2) |
| C2 | 0.025 (3) | 0.017 (3) | 0.008 (3) | 0.006 (2) | 0.003 (2) | 0.005 (2) |
| C3 | 0.016 (3) | 0.026 (3) | 0.020 (3) | 0.008 (2) | 0.005 (2) | 0.004 (2) |
| C4 | 0.019 (3) | 0.027 (3) | 0.019 (3) | 0.011 (2) | 0.002 (2) | 0.004 (2) |
| C5 | 0.026 (3) | 0.016 (3) | 0.018 (3) | 0.011 (2) | 0.005 (2) | 0.007 (2) |
| C6 | 0.023 (3) | 0.026 (3) | 0.017 (3) | 0.011 (2) | 0.009 (2) | 0.008 (2) |
| C7 | 0.018 (3) | 0.023 (3) | 0.021 (3) | 0.007 (2) | 0.000 (2) | 0.010 (2) |
| C8 | 0.026 (3) | 0.022 (3) | 0.015 (3) | 0.011 (2) | 0.004 (2) | 0.004 (2) |
| C9 | 0.022 (3) | 0.020 (3) | 0.019 (3) | 0.010 (2) | 0.007 (2) | 0.004 (2) |
| C10 | 0.029 (3) | 0.034 (3) | 0.013 (3) | 0.014 (3) | 0.012 (2) | 0.013 (2) |
| C11 | 0.024 (3) | 0.033 (3) | 0.021 (3) | 0.012 (3) | 0.014 (3) | 0.012 (3) |
| Br1—C5 | 1.901 (6) | C3—H3 | 0.9500 |
| O1—C1 | 1.226 (6) | C4—C5 | 1.369 (8) |
| N1—C1 | 1.337 (7) | C4—H4 | 0.9500 |
| N1—C2 | 1.413 (7) | C5—C6 | 1.394 (8) |
| N1—H1N | 0.88 (6) | C6—C7 | 1.375 (8) |
| N2—C9 | 1.321 (8) | C6—H6 | 0.9500 |
| N2—C10 | 1.339 (8) | C7—H7 | 0.9500 |
| N3—C11 | 1.340 (8) | C8—C9 | 1.387 (8) |
| N3—C8 | 1.352 (8) | C9—H9 | 0.9500 |
| C1—C8 | 1.501 (8) | C10—C11 | 1.376 (8) |
| C2—C3 | 1.398 (8) | C10—H10 | 0.9500 |
| C2—C7 | 1.402 (8) | C11—H11 | 0.9500 |
| C3—C4 | 1.387 (8) | ||
| C1—N1—C2 | 128.5 (5) | C6—C5—Br1 | 120.2 (4) |
| C1—N1—H1N | 113 (5) | C7—C6—C5 | 120.0 (5) |
| C2—N1—H1N | 119 (5) | C7—C6—H6 | 120.0 |
| C9—N2—C10 | 116.0 (5) | C5—C6—H6 | 120.0 |
| C11—N3—C8 | 115.2 (5) | C6—C7—C2 | 120.0 (5) |
| O1—C1—N1 | 125.4 (6) | C6—C7—H7 | 120.0 |
| O1—C1—C8 | 119.5 (5) | C2—C7—H7 | 120.0 |
| N1—C1—C8 | 115.1 (5) | N3—C8—C9 | 121.6 (5) |
| C3—C2—C7 | 119.4 (5) | N3—C8—C1 | 118.2 (5) |
| C3—C2—N1 | 117.1 (5) | C9—C8—C1 | 120.2 (5) |
| C7—C2—N1 | 123.5 (5) | N2—C9—C8 | 122.6 (5) |
| C4—C3—C2 | 120.0 (5) | N2—C9—H9 | 118.7 |
| C4—C3—H3 | 120.0 | C8—C9—H9 | 118.7 |
| C2—C3—H3 | 120.0 | N2—C10—C11 | 122.1 (5) |
| C5—C4—C3 | 120.1 (5) | N2—C10—H10 | 119.0 |
| C5—C4—H4 | 120.0 | C11—C10—H10 | 119.0 |
| C3—C4—H4 | 120.0 | N3—C11—C10 | 122.6 (5) |
| C4—C5—C6 | 120.6 (6) | N3—C11—H11 | 118.7 |
| C4—C5—Br1 | 119.1 (4) | C10—C11—H11 | 118.7 |
| C2—N1—C1—O1 | 1.4 (10) | N1—C2—C7—C6 | −179.5 (6) |
| C2—N1—C1—C8 | 179.5 (5) | C11—N3—C8—C9 | −0.6 (8) |
| C1—N1—C2—C3 | 169.0 (5) | C11—N3—C8—C1 | 179.6 (5) |
| C1—N1—C2—C7 | −13.3 (9) | O1—C1—C8—N3 | −179.6 (5) |
| C7—C2—C3—C4 | 2.0 (9) | N1—C1—C8—N3 | 2.2 (8) |
| N1—C2—C3—C4 | 179.8 (5) | O1—C1—C8—C9 | 0.6 (8) |
| C2—C3—C4—C5 | −0.6 (9) | N1—C1—C8—C9 | −177.6 (5) |
| C3—C4—C5—C6 | −1.0 (9) | C10—N2—C9—C8 | 0.4 (9) |
| C3—C4—C5—Br1 | −178.8 (4) | N3—C8—C9—N2 | 0.3 (9) |
| C4—C5—C6—C7 | 1.2 (9) | C1—C8—C9—N2 | −179.9 (5) |
| Br1—C5—C6—C7 | 179.0 (4) | C9—N2—C10—C11 | −0.8 (9) |
| C5—C6—C7—C2 | 0.2 (9) | C8—N3—C11—C10 | 0.2 (9) |
| C3—C2—C7—C6 | −1.8 (9) | N2—C10—C11—N3 | 0.5 (10) |
| H··· | ||||
| N1—H1N···N3 | 0.88 (6) | 2.22 (6) | 2.708 (7) | 115 (5) |
| C3—H3···O1i | 0.95 | 2.39 | 3.177 (8) | 140 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N⋯N3 | 0.88 (6) | 2.22 (6) | 2.708 (7) | 115 (5) |
| C3—H3⋯O1i | 0.95 | 2.39 | 3.177 (8) | 140 |
Symmetry code: (i) .