Literature DB >> 21588929

5,7-Dihy-droxy-3,6-dimeth-oxy-2-(4-meth-oxy-phen-yl)-4H-chromen-4-one monohydrate.

Akhtar Mohammad, Itrat Anis, Vickie McKee, Josef W A Frese, Muhammad Raza Shah.   

Abstract

The title compound, C(18)H(16)O(7)·H(2)O, is a flavonoid isolated from Dodonaea viscosa-. The benzopyran ring system of the flavonoid is essentially planar [maximum deviation = 0.025 (2) Å] and inclined at 5.83 (2)° to the attached benzene ring. The water of hydration is involved in extensive hydrogen bonding, assembling the mol-ecules into a supra-molecular network via classical inter-molecular O-H⋯O hydrogen bonding. The crystal structure is further stabilized by π-π stacking inter-actions [centroid-centroid distance between benzene rings = 3.564 (3) Å].

Entities:  

Year:  2010        PMID: 21588929      PMCID: PMC3009314          DOI: 10.1107/S1600536810039012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-oxidant activity of flavonoids, see: Pedrielli et al. (2001 ▶, for their anti-protozoal activity, see: Calzada et al. (1999 ▶) and for their anti-viral activity, see: Lin et al. (1999 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶). For related structures, see: Arfan et al. (2010 ▶); Azhar ul et al. (2004 ▶); Ferheen et al. (2005 ▶); Hussain et al. (2008 ▶, 2009 ▶); Jan et al. (2009 ▶); Khan et al. (2005a ▶,b ▶); Nisar et al. (2010 ▶); Riaz et al. (2002 ▶); Sharif et al. (2005 ▶).

Experimental

Crystal data

C18H16O7·H2O M = 362.32 Monoclinic, a = 19.869 (4) Å b = 6.8126 (15) Å c = 24.424 (5) Å β = 91.298 (4)° V = 3305.2 (12) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 150 K 0.19 × 0.18 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.978, T max = 0.990 14127 measured reflections 3400 independent reflections 2072 reflections with I > 2σ(I) R int = 0.068

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.142 S = 1.05 3400 reflections 243 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039012/rk2231sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039012/rk2231Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16O7·H2OF(000) = 1520
Mr = 362.32Dx = 1.456 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1391 reflections
a = 19.869 (4) Åθ = 2.6–22.0°
b = 6.8126 (15) ŵ = 0.12 mm1
c = 24.424 (5) ÅT = 150 K
β = 91.298 (4)°Block, yellow
V = 3305.2 (12) Å30.19 × 0.18 × 0.09 mm
Z = 8
Bruker APEXII CCD diffractometer3400 independent reflections
Radiation source: fine–focus sealed tube2072 reflections with I > 2σ(I)
graphiteRint = 0.068
φ and ω scansθmax = 26.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −24→24
Tmin = 0.978, Tmax = 0.990k = −8→8
14127 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0597P)2 + 1.2286P] where P = (Fo2 + 2Fc2)/3
3400 reflections(Δ/σ)max < 0.001
243 parametersΔρmax = 0.28 e Å3
3 restraintsΔρmin = −0.28 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69131 (8)0.1125 (2)0.73867 (6)0.0233 (4)
C10.65171 (12)0.1096 (4)0.69190 (10)0.0229 (6)
C20.58358 (12)0.0898 (4)0.69845 (10)0.0258 (6)
H20.56510.08240.73390.031*
C30.54256 (13)0.0807 (4)0.65176 (10)0.0263 (6)
O20.47576 (9)0.0548 (3)0.65803 (8)0.0367 (5)
H2A0.45730.03290.62740.063 (11)*
C40.56984 (13)0.0955 (4)0.59938 (10)0.0268 (6)
O30.52807 (9)0.0810 (2)0.55366 (7)0.0313 (5)
C50.50843 (15)0.2684 (4)0.53157 (11)0.0381 (7)
H5A0.47890.24880.49930.057*
H5B0.54860.34130.52100.057*
H5C0.48440.34290.55930.057*
C60.63836 (13)0.1158 (4)0.59382 (10)0.0248 (6)
O40.66442 (10)0.1283 (3)0.54307 (7)0.0326 (5)
H4A0.70660.12790.54560.079 (13)*
C70.68135 (12)0.1217 (4)0.64058 (9)0.0223 (5)
C80.75264 (12)0.1433 (4)0.63673 (10)0.0236 (6)
O50.78120 (9)0.1632 (3)0.59130 (7)0.0314 (5)
C90.79061 (12)0.1419 (4)0.68777 (10)0.0230 (6)
O60.85888 (8)0.1730 (3)0.68523 (7)0.0308 (5)
C100.89618 (14)0.0038 (5)0.66731 (12)0.0463 (8)
H10A0.94420.03600.66660.069*
H10B0.8805−0.03410.63050.069*
H10C0.8892−0.10540.69270.069*
C110.75982 (12)0.1256 (4)0.73687 (10)0.0227 (6)
C120.79011 (12)0.1236 (3)0.79246 (10)0.0216 (5)
C130.85991 (12)0.1219 (4)0.80250 (10)0.0264 (6)
H130.88950.12290.77250.032*
C140.88602 (13)0.1188 (4)0.85496 (10)0.0253 (6)
H140.93340.11530.86090.030*
C150.84399 (12)0.1208 (4)0.89942 (10)0.0225 (5)
O70.87539 (8)0.1210 (3)0.94962 (7)0.0300 (4)
C160.83423 (14)0.1220 (5)0.99661 (10)0.0407 (7)
H16A0.86290.12241.02980.061*
H16B0.80570.00470.99630.061*
H16C0.80580.23960.99600.061*
C170.77463 (12)0.1225 (4)0.89071 (10)0.0252 (6)
H170.74530.12390.92090.030*
C180.74882 (12)0.1220 (4)0.83780 (10)0.0232 (6)
H180.70140.12060.83210.028*
O1W0.88745 (11)0.4465 (4)0.57732 (8)0.0492 (6)
H1A0.8602 (15)0.357 (4)0.5866 (12)0.074*
H1B0.8908 (17)0.435 (5)0.5425 (7)0.074*
U11U22U33U12U13U23
O10.0190 (9)0.0306 (10)0.0200 (9)−0.0011 (7)−0.0033 (7)−0.0012 (8)
C10.0253 (13)0.0201 (13)0.0230 (13)0.0015 (10)−0.0049 (11)−0.0001 (11)
C20.0245 (14)0.0287 (15)0.0243 (13)0.0006 (11)0.0005 (11)−0.0022 (11)
C30.0240 (14)0.0253 (15)0.0294 (14)−0.0005 (11)−0.0028 (11)−0.0007 (11)
O20.0221 (10)0.0538 (14)0.0340 (11)−0.0035 (9)−0.0051 (8)−0.0030 (9)
C40.0340 (15)0.0214 (14)0.0246 (14)0.0005 (11)−0.0076 (11)−0.0029 (11)
O30.0352 (11)0.0284 (10)0.0297 (10)−0.0006 (8)−0.0143 (8)−0.0011 (8)
C50.0397 (17)0.0334 (17)0.0405 (17)0.0053 (13)−0.0154 (13)0.0020 (13)
C60.0314 (15)0.0206 (13)0.0223 (13)0.0029 (11)−0.0003 (11)−0.0013 (11)
O40.0339 (12)0.0423 (12)0.0217 (10)0.0024 (9)−0.0011 (8)−0.0005 (8)
C70.0260 (13)0.0190 (13)0.0219 (13)0.0025 (11)−0.0018 (10)−0.0010 (10)
C80.0277 (14)0.0206 (13)0.0226 (13)0.0014 (11)0.0029 (11)−0.0005 (10)
O50.0288 (10)0.0439 (12)0.0217 (10)0.0000 (9)0.0026 (8)0.0000 (8)
C90.0191 (13)0.0246 (14)0.0253 (13)−0.0010 (10)0.0012 (10)−0.0005 (11)
O60.0211 (9)0.0428 (12)0.0285 (10)−0.0036 (8)0.0024 (8)0.0014 (8)
C100.0263 (16)0.072 (2)0.0404 (17)0.0160 (15)0.0009 (13)−0.0118 (16)
C110.0189 (13)0.0216 (13)0.0276 (14)0.0014 (10)−0.0004 (11)−0.0009 (11)
C120.0229 (13)0.0181 (13)0.0238 (13)−0.0001 (10)−0.0028 (10)−0.0014 (10)
C130.0236 (13)0.0291 (14)0.0267 (14)−0.0003 (11)0.0013 (11)−0.0012 (12)
C140.0216 (13)0.0264 (14)0.0278 (14)0.0005 (11)−0.0027 (11)0.0016 (11)
C150.0245 (13)0.0189 (13)0.0239 (13)−0.0004 (10)−0.0027 (11)−0.0003 (10)
O70.0262 (10)0.0426 (11)0.0211 (9)0.0009 (8)−0.0041 (7)0.0002 (8)
C160.0323 (16)0.068 (2)0.0211 (14)−0.0006 (15)−0.0012 (12)0.0013 (14)
C170.0249 (14)0.0281 (14)0.0228 (13)0.0010 (11)0.0016 (11)−0.0008 (11)
C180.0207 (13)0.0242 (13)0.0246 (13)−0.0001 (11)−0.0005 (10)−0.0011 (11)
O1W0.0424 (13)0.0714 (17)0.0334 (12)−0.0225 (11)−0.0046 (10)0.0037 (11)
O1—C111.366 (3)O6—C101.444 (3)
O1—C11.372 (3)C10—H10A0.9800
C1—C21.373 (3)C10—H10B0.9800
C1—C71.399 (3)C10—H10C0.9800
C2—C31.388 (3)C11—C121.473 (3)
C2—H20.9500C12—C181.393 (3)
C3—O21.351 (3)C12—C131.403 (3)
C3—C41.404 (4)C13—C141.372 (3)
O2—H2A0.8400C13—H130.9500
C4—C61.378 (4)C14—C151.385 (3)
C4—O31.380 (3)C14—H140.9500
O3—C51.436 (3)C15—O71.363 (3)
C5—H5A0.9800C15—C171.390 (3)
C5—H5B0.9800O7—C161.424 (3)
C5—H5C0.9800C16—H16A0.9800
C6—O41.357 (3)C16—H16B0.9800
C6—C71.411 (3)C16—H16C0.9800
O4—H4A0.8400C17—C181.379 (3)
C7—C81.429 (3)C17—H170.9500
C8—O51.265 (3)C18—H180.9500
C8—C91.442 (3)O1W—H1A0.852 (17)
C9—C111.363 (3)O1W—H1B0.859 (17)
C9—O61.376 (3)
C11—O1—C1121.81 (19)O6—C10—H10A109.5
O1—C1—C2116.9 (2)O6—C10—H10B109.5
O1—C1—C7120.0 (2)H10A—C10—H10B109.5
C2—C1—C7123.1 (2)O6—C10—H10C109.5
C1—C2—C3118.1 (2)H10A—C10—H10C109.5
C1—C2—H2121.0H10B—C10—H10C109.5
C3—C2—H2121.0C9—C11—O1120.1 (2)
O2—C3—C2118.2 (2)C9—C11—C12129.0 (2)
O2—C3—C4120.9 (2)O1—C11—C12110.9 (2)
C2—C3—C4120.9 (2)C18—C12—C13117.3 (2)
C3—O2—H2A109.5C18—C12—C11119.8 (2)
C6—C4—O3120.3 (2)C13—C12—C11122.9 (2)
C6—C4—C3120.0 (2)C14—C13—C12121.0 (2)
O3—C4—C3119.7 (2)C14—C13—H13119.5
C4—O3—C5113.20 (19)C12—C13—H13119.5
O3—C5—H5A109.5C13—C14—C15120.7 (2)
O3—C5—H5B109.5C13—C14—H14119.7
H5A—C5—H5B109.5C15—C14—H14119.7
O3—C5—H5C109.5O7—C15—C14115.7 (2)
H5A—C5—H5C109.5O7—C15—C17124.7 (2)
H5B—C5—H5C109.5C14—C15—C17119.6 (2)
O4—C6—C4119.6 (2)C15—O7—C16117.7 (2)
O4—C6—C7120.1 (2)O7—C16—H16A109.5
C4—C6—C7120.3 (2)O7—C16—H16B109.5
C6—O4—H4A109.5H16A—C16—H16B109.5
C1—C7—C6117.6 (2)O7—C16—H16C109.5
C1—C7—C8120.2 (2)H16A—C16—H16C109.5
C6—C7—C8122.2 (2)H16B—C16—H16C109.5
O5—C8—C7122.3 (2)C18—C17—C15119.3 (2)
O5—C8—C9121.5 (2)C18—C17—H17120.3
C7—C8—C9116.2 (2)C15—C17—H17120.3
C11—C9—O6121.0 (2)C17—C18—C12122.1 (2)
C11—C9—C8121.6 (2)C17—C18—H18118.9
O6—C9—C8117.2 (2)C12—C18—H18118.9
C9—O6—C10113.8 (2)H1A—O1W—H1B105 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1Wi0.841.922.712 (3)157
O2—H2A···O30.842.332.780 (3)114
O4—H4A···O50.841.852.589 (3)146
O1W—H1A···O50.85 (2)2.05 (2)2.886 (3)165 (3)
O1W—H1A···O60.85 (2)2.71 (3)3.288 (3)126 (3)
O1W—H1B···O4ii0.86 (2)2.38 (2)3.135 (3)148 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O1Wi0.841.922.712 (3)157
O2—H2A⋯O30.842.332.780 (3)114
O4—H4A⋯O50.841.852.589 (3)146
O1W—H1A⋯O50.85 (2)2.05 (2)2.886 (3)165 (3)
O1W—H1A⋯O60.85 (2)2.71 (3)3.288 (3)126 (3)
O1W—H1B⋯O4ii0.86 (2)2.38 (2)3.135 (3)148 (3)

Symmetry codes: (i) ; (ii) .

  14 in total

1.  Antioxidant mechanism of flavonoids. Solvent effect on rate constant for chain-breaking reaction of quercetin and epicatechin in autoxidation of methyl linoleate.

Authors:  P Pedrielli; G F Pedulli; L H Skibsted
Journal:  J Agric Food Chem       Date:  2001-06       Impact factor: 5.279

2.  Alysinol--a new triterpene from Alysicarpus monolifer.

Authors:  Naheed Riaz; Itrat Anis; Pir Muhammad Khan; Raza Shah; Abdul Malik
Journal:  Nat Prod Lett       Date:  2002-12

3.  Lipoxygenase inhibitory constituents from Indigofera oblongifolia.

Authors:  Ahsan Sharif; Ejaz Ahmed; Abdul Malik; Naheed Riaz; Nighat Afza; Sarfraz Ahmad Nawaz; Muhammad Arshad; Muhammad Raza Shah; Muhammad Iqbal Choudhary
Journal:  Arch Pharm Res       Date:  2005-07       Impact factor: 4.946

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  In vitro antifungal and antibacterial activities of extracts of Galium tricornutum subsp. longipedunculatum.

Authors:  Abdul Khaliq Jan; Muhammad Raza Shah; Itrat Anis; Inamullah Khan Marwat
Journal:  J Enzyme Inhib Med Chem       Date:  2009-02       Impact factor: 5.051

6.  One new triterpene ester from Nepeta suavis.

Authors:  Javid Hussain; Farman Ullah Khan; Najeeb Ur Rehman; Riaz Ullah; Zia Mohmmad; S Tasleem; A Naeem; M Raza Shah
Journal:  J Asian Nat Prod Res       Date:  2009-12       Impact factor: 1.569

7.  Haloxylines A and B, antifungal and cholinesterase inhibiting piperidine alkaloids from Haloxylon salicornicum.

Authors:  Sadia Ferheen; Ejaz Ahmed; Nighat Afza; Abdul Malik; Muhammad Raza Shah; Sarfraz Ahmad Nawaz; Muhammad Iqbal Choudhary
Journal:  Chem Pharm Bull (Tokyo)       Date:  2005-05       Impact factor: 1.645

8.  Urease inhibitors from Hypericum oblongifolium WALL.

Authors:  Mohammad Arfan; Mumtaz Ali; Habib Ahmad; Itrat Anis; Ajmal Khan; M Iqbal Choudhary; Muhammad Raza Shah
Journal:  J Enzyme Inhib Med Chem       Date:  2010-04       Impact factor: 5.051

9.  Tyrosinase-inhibitory long-chain esters from Amberboa ramosa.

Authors:  Sher Bahadar Khan; Nighat Afza; Abdul Malik; Mahmud Tariq Hasan Khan; Muhammad Raza Shah; Muhammad Iqbal Choudhary
Journal:  Chem Pharm Bull (Tokyo)       Date:  2005-01       Impact factor: 1.645

10.  Spinoside, new coumaroyl flavone glycoside from Amaranthus spinosus.

Authors:  Abdul Malik; Anwar-ul-Haq Sher Bahadar Khan; Muhammad Raza Shah; Pir Muhammad
Journal:  Arch Pharm Res       Date:  2004-12       Impact factor: 4.946

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