| Literature DB >> 21588929 |
Akhtar Mohammad, Itrat Anis, Vickie McKee, Josef W A Frese, Muhammad Raza Shah.
Abstract
The title compound, C(18)H(16)O(7)·H(2)O, is a flavonoid isolated from Dodonaea viscosa-. The benzopyran ring system of the flavonoid is essentially planar [maximum deviation = 0.025 (2) Å] and inclined at 5.83 (2)° to the attached benzene ring. The water of hydration is involved in extensive hydrogen bonding, assembling the mol-ecules into a supra-molecular network via classical inter-molecular O-H⋯O hydrogen bonding. The crystal structure is further stabilized by π-π stacking inter-actions [centroid-centroid distance between benzene rings = 3.564 (3) Å].Entities:
Year: 2010 PMID: 21588929 PMCID: PMC3009314 DOI: 10.1107/S1600536810039012
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H16O7·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 1391 reflections |
| θ = 2.6–22.0° | |
| µ = 0.12 mm−1 | |
| β = 91.298 (4)° | Block, yellow |
| 0.19 × 0.18 × 0.09 mm | |
| Bruker APEXII CCD diffractometer | 3400 independent reflections |
| Radiation source: fine–focus sealed tube | 2072 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 14127 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3400 reflections | (Δ/σ)max < 0.001 |
| 243 parameters | Δρmax = 0.28 e Å−3 |
| 3 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.69131 (8) | 0.1125 (2) | 0.73867 (6) | 0.0233 (4) | |
| C1 | 0.65171 (12) | 0.1096 (4) | 0.69190 (10) | 0.0229 (6) | |
| C2 | 0.58358 (12) | 0.0898 (4) | 0.69845 (10) | 0.0258 (6) | |
| H2 | 0.5651 | 0.0824 | 0.7339 | 0.031* | |
| C3 | 0.54256 (13) | 0.0807 (4) | 0.65176 (10) | 0.0263 (6) | |
| O2 | 0.47576 (9) | 0.0548 (3) | 0.65803 (8) | 0.0367 (5) | |
| H2A | 0.4573 | 0.0329 | 0.6274 | 0.063 (11)* | |
| C4 | 0.56984 (13) | 0.0955 (4) | 0.59938 (10) | 0.0268 (6) | |
| O3 | 0.52807 (9) | 0.0810 (2) | 0.55366 (7) | 0.0313 (5) | |
| C5 | 0.50843 (15) | 0.2684 (4) | 0.53157 (11) | 0.0381 (7) | |
| H5A | 0.4789 | 0.2488 | 0.4993 | 0.057* | |
| H5B | 0.5486 | 0.3413 | 0.5210 | 0.057* | |
| H5C | 0.4844 | 0.3429 | 0.5593 | 0.057* | |
| C6 | 0.63836 (13) | 0.1158 (4) | 0.59382 (10) | 0.0248 (6) | |
| O4 | 0.66442 (10) | 0.1283 (3) | 0.54307 (7) | 0.0326 (5) | |
| H4A | 0.7066 | 0.1279 | 0.5456 | 0.079 (13)* | |
| C7 | 0.68135 (12) | 0.1217 (4) | 0.64058 (9) | 0.0223 (5) | |
| C8 | 0.75264 (12) | 0.1433 (4) | 0.63673 (10) | 0.0236 (6) | |
| O5 | 0.78120 (9) | 0.1632 (3) | 0.59130 (7) | 0.0314 (5) | |
| C9 | 0.79061 (12) | 0.1419 (4) | 0.68777 (10) | 0.0230 (6) | |
| O6 | 0.85888 (8) | 0.1730 (3) | 0.68523 (7) | 0.0308 (5) | |
| C10 | 0.89618 (14) | 0.0038 (5) | 0.66731 (12) | 0.0463 (8) | |
| H10A | 0.9442 | 0.0360 | 0.6666 | 0.069* | |
| H10B | 0.8805 | −0.0341 | 0.6305 | 0.069* | |
| H10C | 0.8892 | −0.1054 | 0.6927 | 0.069* | |
| C11 | 0.75982 (12) | 0.1256 (4) | 0.73687 (10) | 0.0227 (6) | |
| C12 | 0.79011 (12) | 0.1236 (3) | 0.79246 (10) | 0.0216 (5) | |
| C13 | 0.85991 (12) | 0.1219 (4) | 0.80250 (10) | 0.0264 (6) | |
| H13 | 0.8895 | 0.1229 | 0.7725 | 0.032* | |
| C14 | 0.88602 (13) | 0.1188 (4) | 0.85496 (10) | 0.0253 (6) | |
| H14 | 0.9334 | 0.1153 | 0.8609 | 0.030* | |
| C15 | 0.84399 (12) | 0.1208 (4) | 0.89942 (10) | 0.0225 (5) | |
| O7 | 0.87539 (8) | 0.1210 (3) | 0.94962 (7) | 0.0300 (4) | |
| C16 | 0.83423 (14) | 0.1220 (5) | 0.99661 (10) | 0.0407 (7) | |
| H16A | 0.8629 | 0.1224 | 1.0298 | 0.061* | |
| H16B | 0.8057 | 0.0047 | 0.9963 | 0.061* | |
| H16C | 0.8058 | 0.2396 | 0.9960 | 0.061* | |
| C17 | 0.77463 (12) | 0.1225 (4) | 0.89071 (10) | 0.0252 (6) | |
| H17 | 0.7453 | 0.1239 | 0.9209 | 0.030* | |
| C18 | 0.74882 (12) | 0.1220 (4) | 0.83780 (10) | 0.0232 (6) | |
| H18 | 0.7014 | 0.1206 | 0.8321 | 0.028* | |
| O1W | 0.88745 (11) | 0.4465 (4) | 0.57732 (8) | 0.0492 (6) | |
| H1A | 0.8602 (15) | 0.357 (4) | 0.5866 (12) | 0.074* | |
| H1B | 0.8908 (17) | 0.435 (5) | 0.5425 (7) | 0.074* |
| O1 | 0.0190 (9) | 0.0306 (10) | 0.0200 (9) | −0.0011 (7) | −0.0033 (7) | −0.0012 (8) |
| C1 | 0.0253 (13) | 0.0201 (13) | 0.0230 (13) | 0.0015 (10) | −0.0049 (11) | −0.0001 (11) |
| C2 | 0.0245 (14) | 0.0287 (15) | 0.0243 (13) | 0.0006 (11) | 0.0005 (11) | −0.0022 (11) |
| C3 | 0.0240 (14) | 0.0253 (15) | 0.0294 (14) | −0.0005 (11) | −0.0028 (11) | −0.0007 (11) |
| O2 | 0.0221 (10) | 0.0538 (14) | 0.0340 (11) | −0.0035 (9) | −0.0051 (8) | −0.0030 (9) |
| C4 | 0.0340 (15) | 0.0214 (14) | 0.0246 (14) | 0.0005 (11) | −0.0076 (11) | −0.0029 (11) |
| O3 | 0.0352 (11) | 0.0284 (10) | 0.0297 (10) | −0.0006 (8) | −0.0143 (8) | −0.0011 (8) |
| C5 | 0.0397 (17) | 0.0334 (17) | 0.0405 (17) | 0.0053 (13) | −0.0154 (13) | 0.0020 (13) |
| C6 | 0.0314 (15) | 0.0206 (13) | 0.0223 (13) | 0.0029 (11) | −0.0003 (11) | −0.0013 (11) |
| O4 | 0.0339 (12) | 0.0423 (12) | 0.0217 (10) | 0.0024 (9) | −0.0011 (8) | −0.0005 (8) |
| C7 | 0.0260 (13) | 0.0190 (13) | 0.0219 (13) | 0.0025 (11) | −0.0018 (10) | −0.0010 (10) |
| C8 | 0.0277 (14) | 0.0206 (13) | 0.0226 (13) | 0.0014 (11) | 0.0029 (11) | −0.0005 (10) |
| O5 | 0.0288 (10) | 0.0439 (12) | 0.0217 (10) | 0.0000 (9) | 0.0026 (8) | 0.0000 (8) |
| C9 | 0.0191 (13) | 0.0246 (14) | 0.0253 (13) | −0.0010 (10) | 0.0012 (10) | −0.0005 (11) |
| O6 | 0.0211 (9) | 0.0428 (12) | 0.0285 (10) | −0.0036 (8) | 0.0024 (8) | 0.0014 (8) |
| C10 | 0.0263 (16) | 0.072 (2) | 0.0404 (17) | 0.0160 (15) | 0.0009 (13) | −0.0118 (16) |
| C11 | 0.0189 (13) | 0.0216 (13) | 0.0276 (14) | 0.0014 (10) | −0.0004 (11) | −0.0009 (11) |
| C12 | 0.0229 (13) | 0.0181 (13) | 0.0238 (13) | −0.0001 (10) | −0.0028 (10) | −0.0014 (10) |
| C13 | 0.0236 (13) | 0.0291 (14) | 0.0267 (14) | −0.0003 (11) | 0.0013 (11) | −0.0012 (12) |
| C14 | 0.0216 (13) | 0.0264 (14) | 0.0278 (14) | 0.0005 (11) | −0.0027 (11) | 0.0016 (11) |
| C15 | 0.0245 (13) | 0.0189 (13) | 0.0239 (13) | −0.0004 (10) | −0.0027 (11) | −0.0003 (10) |
| O7 | 0.0262 (10) | 0.0426 (11) | 0.0211 (9) | 0.0009 (8) | −0.0041 (7) | 0.0002 (8) |
| C16 | 0.0323 (16) | 0.068 (2) | 0.0211 (14) | −0.0006 (15) | −0.0012 (12) | 0.0013 (14) |
| C17 | 0.0249 (14) | 0.0281 (14) | 0.0228 (13) | 0.0010 (11) | 0.0016 (11) | −0.0008 (11) |
| C18 | 0.0207 (13) | 0.0242 (13) | 0.0246 (13) | −0.0001 (11) | −0.0005 (10) | −0.0011 (11) |
| O1W | 0.0424 (13) | 0.0714 (17) | 0.0334 (12) | −0.0225 (11) | −0.0046 (10) | 0.0037 (11) |
| O1—C11 | 1.366 (3) | O6—C10 | 1.444 (3) |
| O1—C1 | 1.372 (3) | C10—H10A | 0.9800 |
| C1—C2 | 1.373 (3) | C10—H10B | 0.9800 |
| C1—C7 | 1.399 (3) | C10—H10C | 0.9800 |
| C2—C3 | 1.388 (3) | C11—C12 | 1.473 (3) |
| C2—H2 | 0.9500 | C12—C18 | 1.393 (3) |
| C3—O2 | 1.351 (3) | C12—C13 | 1.403 (3) |
| C3—C4 | 1.404 (4) | C13—C14 | 1.372 (3) |
| O2—H2A | 0.8400 | C13—H13 | 0.9500 |
| C4—C6 | 1.378 (4) | C14—C15 | 1.385 (3) |
| C4—O3 | 1.380 (3) | C14—H14 | 0.9500 |
| O3—C5 | 1.436 (3) | C15—O7 | 1.363 (3) |
| C5—H5A | 0.9800 | C15—C17 | 1.390 (3) |
| C5—H5B | 0.9800 | O7—C16 | 1.424 (3) |
| C5—H5C | 0.9800 | C16—H16A | 0.9800 |
| C6—O4 | 1.357 (3) | C16—H16B | 0.9800 |
| C6—C7 | 1.411 (3) | C16—H16C | 0.9800 |
| O4—H4A | 0.8400 | C17—C18 | 1.379 (3) |
| C7—C8 | 1.429 (3) | C17—H17 | 0.9500 |
| C8—O5 | 1.265 (3) | C18—H18 | 0.9500 |
| C8—C9 | 1.442 (3) | O1W—H1A | 0.852 (17) |
| C9—C11 | 1.363 (3) | O1W—H1B | 0.859 (17) |
| C9—O6 | 1.376 (3) | ||
| C11—O1—C1 | 121.81 (19) | O6—C10—H10A | 109.5 |
| O1—C1—C2 | 116.9 (2) | O6—C10—H10B | 109.5 |
| O1—C1—C7 | 120.0 (2) | H10A—C10—H10B | 109.5 |
| C2—C1—C7 | 123.1 (2) | O6—C10—H10C | 109.5 |
| C1—C2—C3 | 118.1 (2) | H10A—C10—H10C | 109.5 |
| C1—C2—H2 | 121.0 | H10B—C10—H10C | 109.5 |
| C3—C2—H2 | 121.0 | C9—C11—O1 | 120.1 (2) |
| O2—C3—C2 | 118.2 (2) | C9—C11—C12 | 129.0 (2) |
| O2—C3—C4 | 120.9 (2) | O1—C11—C12 | 110.9 (2) |
| C2—C3—C4 | 120.9 (2) | C18—C12—C13 | 117.3 (2) |
| C3—O2—H2A | 109.5 | C18—C12—C11 | 119.8 (2) |
| C6—C4—O3 | 120.3 (2) | C13—C12—C11 | 122.9 (2) |
| C6—C4—C3 | 120.0 (2) | C14—C13—C12 | 121.0 (2) |
| O3—C4—C3 | 119.7 (2) | C14—C13—H13 | 119.5 |
| C4—O3—C5 | 113.20 (19) | C12—C13—H13 | 119.5 |
| O3—C5—H5A | 109.5 | C13—C14—C15 | 120.7 (2) |
| O3—C5—H5B | 109.5 | C13—C14—H14 | 119.7 |
| H5A—C5—H5B | 109.5 | C15—C14—H14 | 119.7 |
| O3—C5—H5C | 109.5 | O7—C15—C14 | 115.7 (2) |
| H5A—C5—H5C | 109.5 | O7—C15—C17 | 124.7 (2) |
| H5B—C5—H5C | 109.5 | C14—C15—C17 | 119.6 (2) |
| O4—C6—C4 | 119.6 (2) | C15—O7—C16 | 117.7 (2) |
| O4—C6—C7 | 120.1 (2) | O7—C16—H16A | 109.5 |
| C4—C6—C7 | 120.3 (2) | O7—C16—H16B | 109.5 |
| C6—O4—H4A | 109.5 | H16A—C16—H16B | 109.5 |
| C1—C7—C6 | 117.6 (2) | O7—C16—H16C | 109.5 |
| C1—C7—C8 | 120.2 (2) | H16A—C16—H16C | 109.5 |
| C6—C7—C8 | 122.2 (2) | H16B—C16—H16C | 109.5 |
| O5—C8—C7 | 122.3 (2) | C18—C17—C15 | 119.3 (2) |
| O5—C8—C9 | 121.5 (2) | C18—C17—H17 | 120.3 |
| C7—C8—C9 | 116.2 (2) | C15—C17—H17 | 120.3 |
| C11—C9—O6 | 121.0 (2) | C17—C18—C12 | 122.1 (2) |
| C11—C9—C8 | 121.6 (2) | C17—C18—H18 | 118.9 |
| O6—C9—C8 | 117.2 (2) | C12—C18—H18 | 118.9 |
| C9—O6—C10 | 113.8 (2) | H1A—O1W—H1B | 105 (2) |
| H··· | ||||
| O2—H2A···O1Wi | 0.84 | 1.92 | 2.712 (3) | 157 |
| O2—H2A···O3 | 0.84 | 2.33 | 2.780 (3) | 114 |
| O4—H4A···O5 | 0.84 | 1.85 | 2.589 (3) | 146 |
| O1W—H1A···O5 | 0.85 (2) | 2.05 (2) | 2.886 (3) | 165 (3) |
| O1W—H1A···O6 | 0.85 (2) | 2.71 (3) | 3.288 (3) | 126 (3) |
| O1W—H1B···O4ii | 0.86 (2) | 2.38 (2) | 3.135 (3) | 148 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.84 | 1.92 | 2.712 (3) | 157 |
| O2—H2 | 0.84 | 2.33 | 2.780 (3) | 114 |
| O4—H4 | 0.84 | 1.85 | 2.589 (3) | 146 |
| O1 | 0.85 (2) | 2.05 (2) | 2.886 (3) | 165 (3) |
| O1 | 0.85 (2) | 2.71 (3) | 3.288 (3) | 126 (3) |
| O1 | 0.86 (2) | 2.38 (2) | 3.135 (3) | 148 (3) |
Symmetry codes: (i) ; (ii) .