Literature DB >> 21588323

4-Amino-pyridinium 2-hy-droxy-benzoate.

Hoong-Kun Fun, Madhukar Hemamalini, Venkatachalam Rajakannan.   

Abstract

In the salicylate anion of the title salt, C(5)H(7)N(2) (+)·C(7)H(5)O(3) (-), an intra-molecular O-H⋯O hydrogen bond generating an S(6) ring motif is observed. In the crystal structure, the cations and anions are linked into a two-dimensional network parallel to the ab plane by N-H⋯O and C-H⋯O hydrogen bonds. The network contains R(2) (2)(7) and R(1) (2)(4) ring motifs. Weak π-π inter-actions between the benzene and pyridinium rings [centroid-centroid distance = 3.688 (1) Å] are also observed.

Entities:  

Year:  2010        PMID: 21588323      PMCID: PMC3007529          DOI: 10.1107/S1600536810027042

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-amino­pyridine, see: Schwid et al. (1997 ▶). For the crystal structure of 4-amino­pyridine, see: Chao & Schempp (1977 ▶); Anderson et al. (2005 ▶). For related structures, see: Bhattacharya et al. (1994 ▶); Karle et al. (2003 ▶); Gellert & Hsu (1988 ▶); Hemamalini & Fun (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H7N2C7H5O3 M = 232.24 Orthorhombic, a = 12.5801 (2) Å b = 11.4157 (2) Å c = 15.7560 (3) Å V = 2262.73 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.29 × 0.17 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.971, T max = 0.992 15672 measured reflections 3010 independent reflections 2303 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.118 S = 1.09 3010 reflections 170 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027042/ci5130sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027042/ci5130Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C7H5O3F(000) = 976
Mr = 232.24Dx = 1.363 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2403 reflections
a = 12.5801 (2) Åθ = 2.6–28.5°
b = 11.4157 (2) ŵ = 0.10 mm1
c = 15.7560 (3) ÅT = 100 K
V = 2262.73 (7) Å3Plate, colourless
Z = 80.29 × 0.17 × 0.08 mm
Bruker SMART APEXII CCD area-detector diffractometer3010 independent reflections
Radiation source: fine-focus sealed tube2303 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 29.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→11
Tmin = 0.971, Tmax = 0.992k = −15→15
15672 measured reflectionsl = −21→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0323P)2 + 1.7134P] where P = (Fo2 + 2Fc2)/3
3010 reflections(Δ/σ)max = 0.001
170 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.93694 (11)0.70642 (11)0.39307 (9)0.0267 (3)
O21.08510 (10)0.38258 (10)0.38336 (8)0.0216 (3)
O31.08570 (10)0.56634 (10)0.43059 (8)0.0204 (3)
C10.89745 (14)0.62078 (15)0.34345 (11)0.0184 (4)
C20.80559 (14)0.64452 (17)0.29653 (12)0.0227 (4)
H2A0.77390.71800.29990.027*
C30.76181 (15)0.55938 (18)0.24519 (12)0.0255 (4)
H3A0.70030.57570.21460.031*
C40.80871 (15)0.44924 (17)0.23863 (12)0.0242 (4)
H4A0.77920.39230.20360.029*
C50.89968 (14)0.42548 (16)0.28476 (11)0.0203 (4)
H5A0.93120.35200.28020.024*
C60.94544 (13)0.50956 (15)0.33810 (11)0.0163 (3)
C71.04482 (14)0.48238 (15)0.38720 (11)0.0164 (3)
N10.76523 (12)0.02312 (13)0.49686 (9)0.0182 (3)
N21.02794 (13)0.14710 (14)0.37198 (11)0.0217 (3)
C80.82546 (14)−0.05055 (15)0.45039 (11)0.0186 (4)
H8A0.8061−0.12900.44680.022*
C90.91367 (14)−0.01310 (15)0.40865 (11)0.0178 (4)
H9A0.9543−0.06550.37720.021*
C100.94313 (13)0.10635 (14)0.41341 (11)0.0162 (3)
C110.87938 (14)0.18104 (15)0.46358 (11)0.0170 (4)
H11A0.89700.25980.46920.020*
C120.79224 (14)0.13756 (15)0.50369 (11)0.0186 (4)
H12A0.75040.18730.53640.022*
H1N10.7029 (19)−0.003 (2)0.5260 (15)0.039 (7)*
H2N21.0665 (18)0.102 (2)0.3412 (15)0.032 (6)*
H1N21.0479 (19)0.222 (2)0.3735 (15)0.042 (7)*
H1O11.000 (2)0.669 (2)0.4166 (18)0.061 (9)*
U11U22U33U12U13U23
O10.0301 (8)0.0199 (7)0.0302 (8)0.0066 (6)−0.0086 (6)−0.0064 (5)
O20.0199 (6)0.0150 (6)0.0297 (7)0.0019 (5)−0.0014 (6)−0.0015 (5)
O30.0196 (6)0.0173 (6)0.0242 (7)−0.0002 (5)−0.0051 (5)−0.0032 (5)
C10.0177 (8)0.0214 (9)0.0162 (9)−0.0010 (7)0.0016 (7)−0.0002 (7)
C20.0191 (9)0.0280 (9)0.0210 (10)0.0050 (8)0.0032 (7)0.0042 (7)
C30.0151 (9)0.0420 (11)0.0195 (9)−0.0039 (8)−0.0022 (7)0.0081 (8)
C40.0243 (10)0.0305 (10)0.0179 (9)−0.0106 (8)−0.0027 (8)0.0005 (8)
C50.0224 (9)0.0200 (8)0.0184 (9)−0.0060 (7)0.0012 (7)0.0008 (7)
C60.0151 (8)0.0193 (8)0.0146 (8)−0.0035 (7)0.0016 (6)0.0002 (6)
C70.0154 (8)0.0176 (8)0.0162 (8)−0.0026 (7)0.0014 (7)0.0006 (6)
N10.0153 (7)0.0189 (7)0.0205 (8)−0.0016 (6)0.0007 (6)0.0020 (6)
N20.0219 (8)0.0166 (8)0.0265 (9)−0.0017 (7)0.0073 (7)−0.0021 (6)
C80.0201 (9)0.0148 (8)0.0209 (9)−0.0010 (7)−0.0027 (7)0.0003 (7)
C90.0195 (8)0.0149 (8)0.0190 (9)0.0021 (7)0.0005 (7)−0.0014 (6)
C100.0158 (8)0.0174 (8)0.0155 (8)0.0003 (6)−0.0020 (7)0.0014 (6)
C110.0191 (9)0.0147 (8)0.0171 (9)0.0006 (7)−0.0025 (7)−0.0009 (6)
C120.0200 (9)0.0183 (8)0.0175 (9)0.0036 (7)−0.0009 (7)−0.0016 (7)
O1—C11.347 (2)N1—C81.348 (2)
O1—H1O10.97 (3)N1—C121.354 (2)
O2—C71.248 (2)N1—H1N10.96 (2)
O3—C71.285 (2)N2—C101.335 (2)
C1—C21.398 (3)N2—H2N20.86 (2)
C1—C61.408 (2)N2—H1N20.89 (3)
C2—C31.379 (3)C8—C91.359 (2)
C2—H2A0.93C8—H8A0.93
C3—C41.393 (3)C9—C101.415 (2)
C3—H3A0.93C9—H9A0.93
C4—C51.382 (3)C10—C111.412 (2)
C4—H4A0.93C11—C121.359 (2)
C5—C61.400 (2)C11—H11A0.93
C5—H5A0.93C12—H12A0.93
C6—C71.503 (2)
C1—O1—H1O1101.7 (16)C8—N1—C12120.26 (16)
O1—C1—C2118.11 (16)C8—N1—H1N1122.0 (14)
O1—C1—C6122.07 (16)C12—N1—H1N1117.7 (14)
C2—C1—C6119.82 (16)C10—N2—H2N2121.1 (15)
C3—C2—C1120.23 (17)C10—N2—H1N2123.1 (16)
C3—C2—H2A119.9H2N2—N2—H1N2116 (2)
C1—C2—H2A119.9N1—C8—C9121.71 (16)
C2—C3—C4120.70 (18)N1—C8—H8A119.1
C2—C3—H3A119.7C9—C8—H8A119.1
C4—C3—H3A119.7C8—C9—C10119.43 (16)
C5—C4—C3119.26 (17)C8—C9—H9A120.3
C5—C4—H4A120.4C10—C9—H9A120.3
C3—C4—H4A120.4N2—C10—C11121.15 (16)
C4—C5—C6121.44 (17)N2—C10—C9121.29 (16)
C4—C5—H5A119.3C11—C10—C9117.56 (16)
C6—C5—H5A119.3C12—C11—C10119.85 (16)
C5—C6—C1118.54 (16)C12—C11—H11A120.1
C5—C6—C7120.65 (16)C10—C11—H11A120.1
C1—C6—C7120.80 (15)N1—C12—C11121.17 (16)
O2—C7—O3122.97 (16)N1—C12—H12A119.4
O2—C7—C6120.08 (15)C11—C12—H12A119.4
O3—C7—C6116.94 (15)
O1—C1—C2—C3−179.61 (17)C1—C6—C7—O2178.36 (16)
C6—C1—C2—C30.1 (3)C5—C6—C7—O3175.74 (16)
C1—C2—C3—C4−0.6 (3)C1—C6—C7—O3−3.0 (2)
C2—C3—C4—C50.5 (3)C12—N1—C8—C9−0.6 (3)
C3—C4—C5—C60.2 (3)N1—C8—C9—C10−0.4 (3)
C4—C5—C6—C1−0.7 (3)C8—C9—C10—N2−178.64 (17)
C4—C5—C6—C7−179.52 (16)C8—C9—C10—C111.3 (2)
O1—C1—C6—C5−179.75 (16)N2—C10—C11—C12178.68 (17)
C2—C1—C6—C50.6 (2)C9—C10—C11—C12−1.2 (2)
O1—C1—C6—C7−0.9 (3)C8—N1—C12—C110.6 (3)
C2—C1—C6—C7179.35 (16)C10—C11—C12—N10.3 (3)
C5—C6—C7—O2−2.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.96 (2)2.48 (2)3.1394 (19)126 (2)
N1—H1N1···O3i0.96 (2)1.78 (2)2.7296 (19)172 (2)
N2—H1N2···O20.89 (2)1.90 (2)2.789 (2)176 (2)
O1—H1O1···O30.97 (3)1.61 (2)2.5316 (18)157 (2)
C11—H11A···O3ii0.932.553.360 (2)146
C12—H12A···O2i0.932.563.164 (2)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.96 (2)2.48 (2)3.1394 (19)126 (2)
N1—H1N1⋯O3i0.96 (2)1.78 (2)2.7296 (19)172 (2)
N2—H1N2⋯O20.89 (2)1.90 (2)2.789 (2)176 (2)
O1—H1O1⋯O30.97 (3)1.61 (2)2.5316 (18)157 (2)
C11—H11A⋯O3ii0.932.553.360 (2)146
C12—H12A⋯O2i0.932.563.164 (2)123

Symmetry codes: (i) ; (ii) .

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