| Literature DB >> 21588900 |
Abstract
In the crystal structure of the zinc(II) complex of bicine, [Zn(C(6)H(12)NO(4))(2)], the deprotonated amino acid O,N,O'-chelates to the metal atom through a carboxyl-ate O atom, a hy-droxy O atom and the N atom, the three atoms occupying fac positions of the distorted octa-hedron surrounding the metal atom. The metal atom lies on a center of inversion. The uncoordinated carboxyl-ate O atom is hydrogen bonded to the hy-droxy groups of adjacent mol-ecules, these two hydrogen bonds leading to the formation of a three-dimensional network.Entities:
Year: 2010 PMID: 21588900 PMCID: PMC3008976 DOI: 10.1107/S1600536810043217
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C6H12NO4)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4608 reflections |
| θ = 2.2–28.3° | |
| µ = 1.64 mm−1 | |
| β = 109.1495 (8)° | Block, colorless |
| 0.25 × 0.20 × 0.15 mm | |
| Bruker SMART APEX diffractometer | 1773 independent reflections |
| Radiation source: fine-focus sealed tube | 1634 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 7174 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1773 reflections | (Δ/σ)max = 0.001 |
| 114 parameters | Δρmax = 0.43 e Å−3 |
| 2 restraints | Δρmin = −0.35 e Å−3 |
| Zn1 | 0.5000 | 0.5000 | 0.5000 | 0.00889 (9) | |
| O1 | 0.45689 (11) | 0.33271 (9) | 0.56937 (15) | 0.0132 (2) | |
| O2 | 0.28013 (11) | 0.21247 (9) | 0.57458 (17) | 0.0167 (2) | |
| O3 | 0.51490 (11) | 0.55292 (9) | 0.78390 (15) | 0.0129 (2) | |
| H3 | 0.564 (2) | 0.6126 (14) | 0.831 (3) | 0.030 (6)* | |
| O4 | 0.00548 (11) | 0.66106 (11) | 0.01696 (15) | 0.0160 (2) | |
| H4 | −0.0808 (12) | 0.678 (2) | −0.009 (3) | 0.040 (7)* | |
| N1 | 0.27253 (13) | 0.52389 (11) | 0.44766 (18) | 0.0095 (2) | |
| C1 | 0.32624 (16) | 0.31061 (13) | 0.5430 (2) | 0.0116 (3) | |
| C2 | 0.21180 (15) | 0.40649 (12) | 0.4649 (2) | 0.0114 (3) | |
| H2A | 0.1466 | 0.3821 | 0.3363 | 0.014* | |
| H2B | 0.1528 | 0.4130 | 0.5511 | 0.014* | |
| C3 | 0.26823 (16) | 0.60594 (13) | 0.6035 (2) | 0.0128 (3) | |
| H3A | 0.1690 | 0.6082 | 0.6106 | 0.015* | |
| H3B | 0.2935 | 0.6862 | 0.5732 | 0.015* | |
| C4 | 0.37309 (16) | 0.56760 (14) | 0.7966 (2) | 0.0141 (3) | |
| H4A | 0.3757 | 0.6275 | 0.8955 | 0.017* | |
| H4B | 0.3400 | 0.4925 | 0.8360 | 0.017* | |
| C5 | 0.20539 (15) | 0.57679 (13) | 0.2541 (2) | 0.0114 (3) | |
| H5A | 0.2129 | 0.5197 | 0.1561 | 0.014* | |
| H5B | 0.2620 | 0.6472 | 0.2442 | 0.014* | |
| C6 | 0.04786 (16) | 0.61242 (13) | 0.2055 (2) | 0.0131 (3) | |
| H6A | −0.0125 | 0.5431 | 0.2091 | 0.016* | |
| H6B | 0.0370 | 0.6713 | 0.2990 | 0.016* |
| Zn1 | 0.00708 (13) | 0.00885 (13) | 0.01018 (13) | −0.00067 (8) | 0.00204 (9) | 0.00051 (8) |
| O1 | 0.0092 (5) | 0.0119 (5) | 0.0173 (5) | −0.0003 (4) | 0.0026 (4) | 0.0023 (4) |
| O2 | 0.0106 (5) | 0.0123 (5) | 0.0236 (6) | −0.0021 (4) | 0.0008 (4) | 0.0057 (4) |
| O3 | 0.0102 (5) | 0.0136 (5) | 0.0133 (5) | −0.0013 (4) | 0.0019 (4) | −0.0020 (4) |
| O4 | 0.0111 (5) | 0.0223 (6) | 0.0127 (5) | 0.0045 (4) | 0.0014 (4) | 0.0056 (4) |
| N1 | 0.0094 (6) | 0.0089 (5) | 0.0098 (6) | −0.0002 (4) | 0.0026 (5) | 0.0004 (4) |
| C1 | 0.0120 (7) | 0.0118 (6) | 0.0100 (6) | 0.0003 (5) | 0.0021 (5) | 0.0005 (5) |
| C2 | 0.0091 (7) | 0.0114 (6) | 0.0131 (7) | −0.0011 (5) | 0.0029 (5) | 0.0013 (5) |
| C3 | 0.0125 (7) | 0.0127 (6) | 0.0129 (7) | 0.0015 (5) | 0.0037 (6) | −0.0013 (5) |
| C4 | 0.0124 (7) | 0.0184 (7) | 0.0117 (7) | 0.0001 (5) | 0.0042 (6) | −0.0013 (6) |
| C5 | 0.0092 (7) | 0.0133 (7) | 0.0109 (7) | 0.0007 (5) | 0.0021 (5) | 0.0016 (5) |
| C6 | 0.0106 (7) | 0.0151 (7) | 0.0118 (7) | 0.0022 (5) | 0.0012 (5) | 0.0016 (5) |
| Zn1—O1 | 2.0488 (10) | N1—C3 | 1.4882 (18) |
| Zn1—O1i | 2.0488 (10) | C1—C2 | 1.533 (2) |
| Zn1—O3i | 2.1292 (11) | C2—H2A | 0.9900 |
| Zn1—O3 | 2.1292 (11) | C2—H2B | 0.9900 |
| Zn1—N1i | 2.1484 (13) | C3—C4 | 1.516 (2) |
| Zn1—N1 | 2.1484 (13) | C3—H3A | 0.9900 |
| O1—C1 | 1.2542 (18) | C3—H3B | 0.9900 |
| O2—C1 | 1.2537 (18) | C4—H4A | 0.9900 |
| O3—C4 | 1.4308 (18) | C4—H4B | 0.9900 |
| O3—H3 | 0.84 (1) | C5—C6 | 1.519 (2) |
| O4—C6 | 1.4212 (17) | C5—H5A | 0.9900 |
| O4—H4 | 0.83 (1) | C5—H5B | 0.9900 |
| N1—C2 | 1.4836 (18) | C6—H6A | 0.9900 |
| N1—C5 | 1.4839 (18) | C6—H6B | 0.9900 |
| O1—Zn1—O1i | 180.0 | N1—C2—H2A | 108.7 |
| O1—Zn1—O3i | 91.59 (4) | C1—C2—H2A | 108.7 |
| O1i—Zn1—O3i | 88.41 (4) | N1—C2—H2B | 108.7 |
| O1—Zn1—O3 | 88.41 (4) | C1—C2—H2B | 108.7 |
| O1i—Zn1—O3 | 91.59 (4) | H2A—C2—H2B | 107.6 |
| O3i—Zn1—O3 | 180.0 | N1—C3—C4 | 110.98 (12) |
| O1—Zn1—N1i | 97.12 (4) | N1—C3—H3A | 109.4 |
| O1i—Zn1—N1i | 82.88 (4) | C4—C3—H3A | 109.4 |
| O3i—Zn1—N1i | 82.74 (4) | N1—C3—H3B | 109.4 |
| O3—Zn1—N1i | 97.26 (4) | C4—C3—H3B | 109.4 |
| O1—Zn1—N1 | 82.88 (4) | H3A—C3—H3B | 108.0 |
| O1i—Zn1—N1 | 97.12 (4) | O3—C4—C3 | 110.24 (12) |
| O3i—Zn1—N1 | 97.26 (4) | O3—C4—H4A | 109.6 |
| O3—Zn1—N1 | 82.74 (4) | C3—C4—H4A | 109.6 |
| N1i—Zn1—N1 | 180.0 | O3—C4—H4B | 109.6 |
| C1—O1—Zn1 | 115.48 (9) | C3—C4—H4B | 109.6 |
| C4—O3—Zn1 | 109.91 (8) | H4A—C4—H4B | 108.1 |
| C4—O3—H3 | 108.3 (16) | N1—C5—C6 | 115.44 (12) |
| Zn1—O3—H3 | 118.6 (16) | N1—C5—H5A | 108.4 |
| C6—O4—H4 | 105.4 (17) | C6—C5—H5A | 108.4 |
| C2—N1—C5 | 112.49 (11) | N1—C5—H5B | 108.4 |
| C2—N1—C3 | 112.67 (11) | C6—C5—H5B | 108.4 |
| C5—N1—C3 | 111.57 (11) | H5A—C5—H5B | 107.5 |
| C2—N1—Zn1 | 106.95 (8) | O4—C6—C5 | 106.39 (12) |
| C5—N1—Zn1 | 109.26 (9) | O4—C6—H6A | 110.5 |
| C3—N1—Zn1 | 103.34 (9) | C5—C6—H6A | 110.5 |
| O2—C1—O1 | 124.08 (13) | O4—C6—H6B | 110.5 |
| O2—C1—C2 | 116.06 (13) | C5—C6—H6B | 110.5 |
| O1—C1—C2 | 119.86 (13) | H6A—C6—H6B | 108.6 |
| N1—C2—C1 | 114.08 (12) | ||
| O3i—Zn1—O1—C1 | −92.62 (10) | O3i—Zn1—N1—C3 | −157.45 (8) |
| O3—Zn1—O1—C1 | 87.38 (10) | O3—Zn1—N1—C3 | 22.55 (8) |
| N1i—Zn1—O1—C1 | −175.50 (10) | Zn1—O1—C1—O2 | 178.78 (12) |
| N1—Zn1—O1—C1 | 4.50 (10) | Zn1—O1—C1—C2 | −0.37 (17) |
| O1—Zn1—O3—C4 | −78.86 (9) | C5—N1—C2—C1 | 128.95 (13) |
| O1i—Zn1—O3—C4 | 101.14 (9) | C3—N1—C2—C1 | −103.88 (14) |
| N1i—Zn1—O3—C4 | −175.83 (9) | Zn1—N1—C2—C1 | 8.99 (14) |
| N1—Zn1—O3—C4 | 4.17 (9) | O2—C1—C2—N1 | 174.38 (12) |
| O1—Zn1—N1—C2 | −7.26 (9) | O1—C1—C2—N1 | −6.4 (2) |
| O1i—Zn1—N1—C2 | 172.74 (9) | C2—N1—C3—C4 | 68.96 (15) |
| O3i—Zn1—N1—C2 | 83.44 (9) | C5—N1—C3—C4 | −163.38 (12) |
| O3—Zn1—N1—C2 | −96.56 (9) | Zn1—N1—C3—C4 | −46.10 (13) |
| O1—Zn1—N1—C5 | −129.27 (9) | Zn1—O3—C4—C3 | −30.45 (14) |
| O1i—Zn1—N1—C5 | 50.73 (9) | N1—C3—C4—O3 | 53.60 (16) |
| O3i—Zn1—N1—C5 | −38.57 (9) | C2—N1—C5—C6 | 68.31 (16) |
| O3—Zn1—N1—C5 | 141.43 (9) | C3—N1—C5—C6 | −59.44 (16) |
| O1—Zn1—N1—C3 | 111.84 (9) | Zn1—N1—C5—C6 | −173.08 (10) |
| O1i—Zn1—N1—C3 | −68.16 (9) | N1—C5—C6—O4 | 179.67 (11) |
| H··· | ||||
| O3—H3···O2ii | 0.84 (1) | 1.85 (1) | 2.651 (2) | 161 (2) |
| O4—H4···O2iii | 0.83 (1) | 1.89 (1) | 2.715 (2) | 178 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2i | 0.84 (1) | 1.85 (1) | 2.651 (2) | 161 (2) |
| O4—H4⋯O2ii | 0.83 (1) | 1.89 (1) | 2.715 (2) | 178 (3) |
Symmetry codes: (i) ; (ii) .