Literature DB >> 21588900

Bis{2-[bis-(2-hy-droxy-eth-yl)amino]-acetato-κO,N,O'}zinc(II).

Kong Mun Lo1, Seik Weng Ng.   

Abstract

In the crystal structure of the zinc(II) complex of bicine, [Zn(C(6)H(12)NO(4))(2)], the deprotonated amino acid O,N,O'-chelates to the metal atom through a carboxyl-ate O atom, a hy-droxy O atom and the N atom, the three atoms occupying fac positions of the distorted octa-hedron surrounding the metal atom. The metal atom lies on a center of inversion. The uncoordinated carboxyl-ate O atom is hydrogen bonded to the hy-droxy groups of adjacent mol-ecules, these two hydrogen bonds leading to the formation of a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588900      PMCID: PMC3008976          DOI: 10.1107/S1600536810043217

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural cobalt(II) analog, see: Zhao & Liu (2010 ▶).

Experimental

Crystal data

[Zn(C6H12NO4)2] M = 389.70 Monoclinic, a = 9.7863 (7) Å b = 11.3715 (8) Å c = 7.3462 (5) Å β = 109.1495 (8)° V = 772.28 (9) Å3 Z = 2 Mo Kα radiation μ = 1.64 mm−1 T = 100 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.685, T max = 0.792 7174 measured reflections 1773 independent reflections 1634 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.062 S = 1.12 1773 reflections 114 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043217/xu5062sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043217/xu5062Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C6H12NO4)2]F(000) = 408
Mr = 389.70Dx = 1.676 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4608 reflections
a = 9.7863 (7) Åθ = 2.2–28.3°
b = 11.3715 (8) ŵ = 1.64 mm1
c = 7.3462 (5) ÅT = 100 K
β = 109.1495 (8)°Block, colorless
V = 772.28 (9) Å30.25 × 0.20 × 0.15 mm
Z = 2
Bruker SMART APEX diffractometer1773 independent reflections
Radiation source: fine-focus sealed tube1634 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.685, Tmax = 0.792k = −14→14
7174 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.062H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0283P)2 + 0.4612P] where P = (Fo2 + 2Fc2)/3
1773 reflections(Δ/σ)max = 0.001
114 parametersΔρmax = 0.43 e Å3
2 restraintsΔρmin = −0.35 e Å3
xyzUiso*/Ueq
Zn10.50000.50000.50000.00889 (9)
O10.45689 (11)0.33271 (9)0.56937 (15)0.0132 (2)
O20.28013 (11)0.21247 (9)0.57458 (17)0.0167 (2)
O30.51490 (11)0.55292 (9)0.78390 (15)0.0129 (2)
H30.564 (2)0.6126 (14)0.831 (3)0.030 (6)*
O40.00548 (11)0.66106 (11)0.01696 (15)0.0160 (2)
H4−0.0808 (12)0.678 (2)−0.009 (3)0.040 (7)*
N10.27253 (13)0.52389 (11)0.44766 (18)0.0095 (2)
C10.32624 (16)0.31061 (13)0.5430 (2)0.0116 (3)
C20.21180 (15)0.40649 (12)0.4649 (2)0.0114 (3)
H2A0.14660.38210.33630.014*
H2B0.15280.41300.55110.014*
C30.26823 (16)0.60594 (13)0.6035 (2)0.0128 (3)
H3A0.16900.60820.61060.015*
H3B0.29350.68620.57320.015*
C40.37309 (16)0.56760 (14)0.7966 (2)0.0141 (3)
H4A0.37570.62750.89550.017*
H4B0.34000.49250.83600.017*
C50.20539 (15)0.57679 (13)0.2541 (2)0.0114 (3)
H5A0.21290.51970.15610.014*
H5B0.26200.64720.24420.014*
C60.04786 (16)0.61242 (13)0.2055 (2)0.0131 (3)
H6A−0.01250.54310.20910.016*
H6B0.03700.67130.29900.016*
U11U22U33U12U13U23
Zn10.00708 (13)0.00885 (13)0.01018 (13)−0.00067 (8)0.00204 (9)0.00051 (8)
O10.0092 (5)0.0119 (5)0.0173 (5)−0.0003 (4)0.0026 (4)0.0023 (4)
O20.0106 (5)0.0123 (5)0.0236 (6)−0.0021 (4)0.0008 (4)0.0057 (4)
O30.0102 (5)0.0136 (5)0.0133 (5)−0.0013 (4)0.0019 (4)−0.0020 (4)
O40.0111 (5)0.0223 (6)0.0127 (5)0.0045 (4)0.0014 (4)0.0056 (4)
N10.0094 (6)0.0089 (5)0.0098 (6)−0.0002 (4)0.0026 (5)0.0004 (4)
C10.0120 (7)0.0118 (6)0.0100 (6)0.0003 (5)0.0021 (5)0.0005 (5)
C20.0091 (7)0.0114 (6)0.0131 (7)−0.0011 (5)0.0029 (5)0.0013 (5)
C30.0125 (7)0.0127 (6)0.0129 (7)0.0015 (5)0.0037 (6)−0.0013 (5)
C40.0124 (7)0.0184 (7)0.0117 (7)0.0001 (5)0.0042 (6)−0.0013 (6)
C50.0092 (7)0.0133 (7)0.0109 (7)0.0007 (5)0.0021 (5)0.0016 (5)
C60.0106 (7)0.0151 (7)0.0118 (7)0.0022 (5)0.0012 (5)0.0016 (5)
Zn1—O12.0488 (10)N1—C31.4882 (18)
Zn1—O1i2.0488 (10)C1—C21.533 (2)
Zn1—O3i2.1292 (11)C2—H2A0.9900
Zn1—O32.1292 (11)C2—H2B0.9900
Zn1—N1i2.1484 (13)C3—C41.516 (2)
Zn1—N12.1484 (13)C3—H3A0.9900
O1—C11.2542 (18)C3—H3B0.9900
O2—C11.2537 (18)C4—H4A0.9900
O3—C41.4308 (18)C4—H4B0.9900
O3—H30.84 (1)C5—C61.519 (2)
O4—C61.4212 (17)C5—H5A0.9900
O4—H40.83 (1)C5—H5B0.9900
N1—C21.4836 (18)C6—H6A0.9900
N1—C51.4839 (18)C6—H6B0.9900
O1—Zn1—O1i180.0N1—C2—H2A108.7
O1—Zn1—O3i91.59 (4)C1—C2—H2A108.7
O1i—Zn1—O3i88.41 (4)N1—C2—H2B108.7
O1—Zn1—O388.41 (4)C1—C2—H2B108.7
O1i—Zn1—O391.59 (4)H2A—C2—H2B107.6
O3i—Zn1—O3180.0N1—C3—C4110.98 (12)
O1—Zn1—N1i97.12 (4)N1—C3—H3A109.4
O1i—Zn1—N1i82.88 (4)C4—C3—H3A109.4
O3i—Zn1—N1i82.74 (4)N1—C3—H3B109.4
O3—Zn1—N1i97.26 (4)C4—C3—H3B109.4
O1—Zn1—N182.88 (4)H3A—C3—H3B108.0
O1i—Zn1—N197.12 (4)O3—C4—C3110.24 (12)
O3i—Zn1—N197.26 (4)O3—C4—H4A109.6
O3—Zn1—N182.74 (4)C3—C4—H4A109.6
N1i—Zn1—N1180.0O3—C4—H4B109.6
C1—O1—Zn1115.48 (9)C3—C4—H4B109.6
C4—O3—Zn1109.91 (8)H4A—C4—H4B108.1
C4—O3—H3108.3 (16)N1—C5—C6115.44 (12)
Zn1—O3—H3118.6 (16)N1—C5—H5A108.4
C6—O4—H4105.4 (17)C6—C5—H5A108.4
C2—N1—C5112.49 (11)N1—C5—H5B108.4
C2—N1—C3112.67 (11)C6—C5—H5B108.4
C5—N1—C3111.57 (11)H5A—C5—H5B107.5
C2—N1—Zn1106.95 (8)O4—C6—C5106.39 (12)
C5—N1—Zn1109.26 (9)O4—C6—H6A110.5
C3—N1—Zn1103.34 (9)C5—C6—H6A110.5
O2—C1—O1124.08 (13)O4—C6—H6B110.5
O2—C1—C2116.06 (13)C5—C6—H6B110.5
O1—C1—C2119.86 (13)H6A—C6—H6B108.6
N1—C2—C1114.08 (12)
O3i—Zn1—O1—C1−92.62 (10)O3i—Zn1—N1—C3−157.45 (8)
O3—Zn1—O1—C187.38 (10)O3—Zn1—N1—C322.55 (8)
N1i—Zn1—O1—C1−175.50 (10)Zn1—O1—C1—O2178.78 (12)
N1—Zn1—O1—C14.50 (10)Zn1—O1—C1—C2−0.37 (17)
O1—Zn1—O3—C4−78.86 (9)C5—N1—C2—C1128.95 (13)
O1i—Zn1—O3—C4101.14 (9)C3—N1—C2—C1−103.88 (14)
N1i—Zn1—O3—C4−175.83 (9)Zn1—N1—C2—C18.99 (14)
N1—Zn1—O3—C44.17 (9)O2—C1—C2—N1174.38 (12)
O1—Zn1—N1—C2−7.26 (9)O1—C1—C2—N1−6.4 (2)
O1i—Zn1—N1—C2172.74 (9)C2—N1—C3—C468.96 (15)
O3i—Zn1—N1—C283.44 (9)C5—N1—C3—C4−163.38 (12)
O3—Zn1—N1—C2−96.56 (9)Zn1—N1—C3—C4−46.10 (13)
O1—Zn1—N1—C5−129.27 (9)Zn1—O3—C4—C3−30.45 (14)
O1i—Zn1—N1—C550.73 (9)N1—C3—C4—O353.60 (16)
O3i—Zn1—N1—C5−38.57 (9)C2—N1—C5—C668.31 (16)
O3—Zn1—N1—C5141.43 (9)C3—N1—C5—C6−59.44 (16)
O1—Zn1—N1—C3111.84 (9)Zn1—N1—C5—C6−173.08 (10)
O1i—Zn1—N1—C3−68.16 (9)N1—C5—C6—O4179.67 (11)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2ii0.84 (1)1.85 (1)2.651 (2)161 (2)
O4—H4···O2iii0.83 (1)1.89 (1)2.715 (2)178 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.84 (1)1.85 (1)2.651 (2)161 (2)
O4—H4⋯O2ii0.83 (1)1.89 (1)2.715 (2)178 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis[N,N-bis-(2-hy-droxy-eth-yl)glycinato]cobalt(II).

Authors:  Jiong-Peng Zhao; Fu-Chen Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  2 in total
  1 in total

1.  Crystal structure, solvothermal synthesis, thermogravimetric studies and DFT calculations of a five-coordinate cobalt(II) compound based on the N,N-bis-(2-hy-droxy-eth-yl)glycine anion.

Authors:  Yanling Zhou; Xianrong Liu; Qijun Wang; Lisheng Wang; Baoling Song
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-09-23
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