Literature DB >> 21587759

Bis[N,N-bis-(2-hy-droxy-eth-yl)glycinato]cobalt(II).

Jiong-Peng Zhao1, Fu-Chen Liu.   

Abstract

The asymmetric unit of the title compound, [Co(C(6)H(12)NO(4))(2)], contains one half-mol-ecule with the Co(II) ion situated on an inversion center. Inter-molecular O-H⋯O hydrogen bonds generate a three-dimensional hydrogen-bonding network, which consolidates the crystal packing.

Entities:  

Year:  2010        PMID: 21587759      PMCID: PMC3006857          DOI: 10.1107/S1600536810023810

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ammar et al. (2001 ▶); Chuklanova et al. (1981 ▶); Thakuria & Das (2007 ▶).

Experimental

Crystal data

[Co(C6H12NO4)2] M = 383.26 Monoclinic, a = 9.932 (2) Å b = 11.388 (2) Å c = 7.4477 (15) Å β = 110.12 (3)° V = 791.0 (3) Å3 Z = 2 Mo Kα radiation μ = 1.13 mm−1 T = 293 K 0.20 × 0.18 × 0.18 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.736, T max = 1.000 8129 measured reflections 1819 independent reflections 1357 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.159 S = 1.00 1819 reflections 106 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SCXmini Benchtop Crystallography System Software (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO (Rigaku, 1998 ▶); data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810023810/cv2723sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023810/cv2723Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H12NO4)2]F(000) = 402
Mr = 383.26Dx = 1.609 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.932 (2) ÅCell parameters from 7077 reflections
b = 11.388 (2) Åθ = 3.4–27.6°
c = 7.4477 (15) ŵ = 1.13 mm1
β = 110.12 (3)°T = 293 K
V = 791.0 (3) Å3Block, red
Z = 20.2 × 0.18 × 0.18 mm
Rigaku SCXmini diffractometer1819 independent reflections
Radiation source: fine-focus sealed tube1357 reflections with I > 2σ(I)
graphiteRint = 0.072
ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→12
Tmin = 0.736, Tmax = 1.000k = −14→14
8129 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
1819 reflections(Δ/σ)max < 0.001
106 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.0244 (3)
O10.0043 (3)0.3365 (3)0.0259 (4)0.0552 (9)
H11−0.08460.3211−0.00730.066*
O20.5173 (3)0.4447 (3)0.7743 (4)0.0347 (7)
H120.57460.38830.82180.042*
O30.2823 (3)0.7874 (2)0.5700 (4)0.0449 (8)
O40.4555 (3)0.6656 (2)0.5703 (4)0.0333 (6)
N10.2727 (3)0.4762 (2)0.4479 (5)0.0270 (7)
C10.0483 (4)0.3862 (4)0.2103 (6)0.0431 (10)
H1A0.03770.32990.30220.052*
H1B−0.00900.45500.21180.052*
C20.2040 (4)0.4198 (3)0.2589 (5)0.0329 (9)
H2A0.25790.34960.25380.040*
H2B0.21150.47300.16100.040*
C30.2708 (4)0.3967 (4)0.6042 (6)0.0363 (9)
H3A0.29180.31730.57500.044*
H3B0.17580.39700.61370.044*
C40.3792 (4)0.4339 (4)0.7929 (6)0.0401 (10)
H4A0.35100.50860.83170.048*
H4B0.38300.37620.89020.048*
C50.2141 (4)0.5937 (3)0.4614 (6)0.0309 (8)
H5A0.15540.58820.54160.037*
H5B0.15210.61720.33470.037*
C60.3256 (4)0.6887 (3)0.5411 (5)0.0310 (9)
U11U22U33U12U13U23
Co10.0203 (4)0.0227 (4)0.0279 (4)0.0026 (3)0.0055 (3)−0.0003 (3)
O10.0397 (18)0.066 (2)0.053 (2)−0.0136 (15)0.0076 (15)−0.0177 (16)
O20.0302 (14)0.0401 (16)0.0306 (15)0.0078 (13)0.0065 (11)0.0075 (12)
O30.0249 (15)0.0323 (15)0.068 (2)0.0053 (12)0.0029 (14)−0.0206 (14)
O40.0227 (13)0.0269 (13)0.0468 (17)0.0006 (11)0.0076 (12)−0.0064 (11)
N10.0241 (16)0.0217 (15)0.0329 (17)−0.0002 (12)0.0067 (13)−0.0023 (11)
C10.037 (2)0.047 (2)0.039 (2)−0.013 (2)0.0060 (18)−0.0058 (19)
C20.0244 (19)0.037 (2)0.036 (2)−0.0001 (16)0.0081 (16)−0.0030 (17)
C30.034 (2)0.035 (2)0.041 (2)−0.0042 (18)0.0142 (18)0.0034 (17)
C40.034 (2)0.050 (3)0.036 (2)0.003 (2)0.0119 (18)0.0074 (19)
C50.0216 (18)0.034 (2)0.035 (2)0.0020 (16)0.0072 (15)−0.0028 (16)
C60.0258 (19)0.032 (2)0.031 (2)0.0047 (16)0.0048 (15)−0.0049 (15)
Co1—O42.046 (2)N1—C21.483 (5)
Co1—O4i2.046 (2)C1—C21.512 (5)
Co1—O22.088 (3)C1—H1A0.9700
Co1—O2i2.088 (3)C1—H1B0.9700
Co1—N1i2.172 (3)C2—H2A0.9700
Co1—N12.172 (3)C2—H2B0.9700
O1—C11.409 (5)C3—C41.507 (5)
O1—H110.8499C3—H3A0.9700
O2—C41.430 (5)C3—H3B0.9700
O2—H120.8500C4—H4A0.9700
O3—C61.249 (4)C4—H4B0.9700
O4—C61.260 (4)C5—C61.515 (5)
N1—C51.476 (4)C5—H5A0.9700
N1—C31.480 (5)C5—H5B0.9700
O4—Co1—O4i180.0C2—C1—H1B110.4
O4—Co1—O288.86 (11)H1A—C1—H1B108.6
O4i—Co1—O291.14 (11)N1—C2—C1115.8 (3)
O4—Co1—O2i91.14 (11)N1—C2—H2A108.3
O4i—Co1—O2i88.86 (11)C1—C2—H2A108.3
O2—Co1—O2i180.0N1—C2—H2B108.3
O4—Co1—N1i98.17 (10)C1—C2—H2B108.3
O4i—Co1—N1i81.83 (10)H2A—C2—H2B107.4
O2—Co1—N1i97.61 (11)N1—C3—C4111.3 (3)
O2i—Co1—N1i82.39 (11)N1—C3—H3A109.4
O4—Co1—N181.83 (10)C4—C3—H3A109.4
O4i—Co1—N198.17 (10)N1—C3—H3B109.4
O2—Co1—N182.39 (11)C4—C3—H3B109.4
O2i—Co1—N197.61 (11)H3A—C3—H3B108.0
N1i—Co1—N1180.0O2—C4—C3109.6 (3)
C1—O1—H11108.0O2—C4—H4A109.8
C4—O2—Co1111.2 (2)C3—C4—H4A109.8
C4—O2—H12115.0O2—C4—H4B109.8
Co1—O2—H12116.9C3—C4—H4B109.8
C6—O4—Co1116.5 (2)H4A—C4—H4B108.2
C5—N1—C3112.9 (3)N1—C5—C6114.9 (3)
C5—N1—C2113.2 (3)N1—C5—H5A108.5
C3—N1—C2110.9 (3)C6—C5—H5A108.5
C5—N1—Co1106.5 (2)N1—C5—H5B108.5
C3—N1—Co1103.3 (2)C6—C5—H5B108.5
C2—N1—Co1109.5 (2)H5A—C5—H5B107.5
O1—C1—C2106.5 (3)O3—C6—O4123.4 (3)
O1—C1—H1A110.4O3—C6—C5117.5 (3)
C2—C1—H1A110.4O4—C6—C5119.1 (3)
O1—C1—H1B110.4
O4—Co1—O2—C475.2 (3)O4i—Co1—N1—C2−48.4 (2)
O4i—Co1—O2—C4−104.8 (3)O2—Co1—N1—C2−138.4 (2)
O2i—Co1—O2—C4−9(84)O2i—Co1—N1—C241.6 (2)
N1i—Co1—O2—C4173.3 (3)N1i—Co1—N1—C235 (100)
N1—Co1—O2—C4−6.7 (3)C5—N1—C2—C1−67.2 (4)
O4i—Co1—O4—C637 (100)C3—N1—C2—C160.8 (4)
O2—Co1—O4—C6−88.4 (3)Co1—N1—C2—C1174.1 (3)
O2i—Co1—O4—C691.6 (3)O1—C1—C2—N1179.1 (3)
N1i—Co1—O4—C6174.1 (3)C5—N1—C3—C4−70.5 (4)
N1—Co1—O4—C6−5.9 (3)C2—N1—C3—C4161.4 (3)
O4—Co1—N1—C58.9 (2)Co1—N1—C3—C444.2 (3)
O4i—Co1—N1—C5−171.1 (2)Co1—O2—C4—C332.5 (4)
O2—Co1—N1—C598.9 (2)N1—C3—C4—O2−53.5 (4)
O2i—Co1—N1—C5−81.1 (2)C3—N1—C5—C6101.7 (4)
N1i—Co1—N1—C5−88 (100)C2—N1—C5—C6−131.4 (3)
O4—Co1—N1—C3−110.2 (2)Co1—N1—C5—C6−11.0 (4)
O4i—Co1—N1—C369.8 (2)Co1—O4—C6—O3−177.0 (3)
O2—Co1—N1—C3−20.3 (2)Co1—O4—C6—C51.1 (5)
O2i—Co1—N1—C3159.7 (2)N1—C5—C6—O3−174.3 (3)
N1i—Co1—N1—C3153 (100)N1—C5—C6—O47.4 (5)
O4—Co1—N1—C2131.6 (2)
D—H···AD—HH···AD···AD—H···A
O2—H12···O3ii0.851.792.632 (4)171
O1—H11···O3iii0.851.892.744 (4)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H12⋯O3i0.851.792.632 (4)171
O1—H11⋯O3ii0.851.892.744 (4)178

Symmetry codes: (i) ; (ii) .

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