| Literature DB >> 27746942 |
Yanling Zhou1, Xianrong Liu2, Qijun Wang2, Lisheng Wang2, Baoling Song2.
Abstract
The reaction of CoCl2·6H2O, N,N-bis-(2-hy-droxy-eth-yl)glycine and tri-ethyl-amine (Et3N) in ethanol solution under solvothermal conditions produced crystals of [N,N-bis-(2-hy-droxy-eth-yl)glycinato]chloridocobalt(II), [Co(C6H12NO4)Cl]. The CoII ion is coordinated in a slightly distorted trigonal-bipyramidal environment which is defined by three O atoms occupying the equatorial plane and the N and Cl atoms in the apical sites. In the crystal, two types of O-H⋯O hydrogen bonds connect the mol-ecules, forming a two-dimensional network parallel to (001). The mol-ecular structure of the title compound confirms the findings of FTIR, elemental analysis, ESI-MS analysis and TG analysis. By using the density functional theory (DFT) (B3LYP) method with 6-31G(d) basis set, the molecular structure has been calculated and optimized.Entities:
Keywords: DFT; ESI–MS; Five-coordinate transition metal; crystal structure; mononuclear; solvothermal synthesis
Year: 2016 PMID: 27746942 PMCID: PMC5050777 DOI: 10.1107/S2056989016014596
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Coordination modes for bicH2 − (a–e), bicH2− (f–h) and bic3− (i, j).
Figure 2The molecular structure of the title compound, showing the atom labeling. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O4i | 0.85 (1) | 1.79 (1) | 2.6271 (19) | 165 (2) |
| O1—H1⋯O4ii | 0.79 (3) | 1.89 (3) | 2.6567 (19) | 165 (3) |
Symmetry codes: (i) ; (ii) .
Figure 3Part of the crystal structure showing the two different O—H⋯O hydrogen bonds as distinct colors, blue for O1—H⋯O4ii bonds and green for O2—H2⋯O4i bonds (symmetry codes as in Table 1 ▸).
Figure 4The optical microscope image of single crystals of compound 1.
Figure 5ESI mass spectrum of compound 1.
Figure 6The TG curve of compound 1.
Figure 7Optimized geometries (B3LYP) for the low-spin (S = 1/2, bottom) and the high-spin (S = 3/2, top) ground states and the relative energy of the two ground states (kcal mol−1).
Experimental details
| Crystal data | |
| Chemical formula | [Co(C6H12NO4)Cl] |
|
| 256.55 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 8.3925 (9), 14.0939 (15), 15.8448 (17) |
|
| 1874.2 (3) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 2.10 |
| Crystal size (mm) | 0.84 × 0.27 × 0.24 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.512, 0.604 |
| No. of measured, independent and observed [ | 15130, 1933, 1854 |
|
| 0.021 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.025, 0.066, 1.14 |
| No. of reflections | 1933 |
| No. of parameters | 125 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.51, −0.43 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SIR2004 (Burla et al., 2007 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| [Co(C6H12NO4)Cl] | |
| Mo | |
| Orthorhombic, | Cell parameters from 9897 reflections |
| θ = 2.6–26.4° | |
| µ = 2.10 mm−1 | |
| Prism, purple | |
| 0.84 × 0.27 × 0.24 mm | |
| Bruker APEXII CCD diffractometer | 1854 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.4°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | |
| 15130 measured reflections | |
| 1933 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1933 reflections | Δρmax = 0.51 e Å−3 |
| 125 parameters | Δρmin = −0.43 e Å−3 |
| 3 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Co1 | 0.41813 (3) | 0.62528 (2) | 0.09419 (2) | 0.02152 (10) | |
| Cl1 | 0.15183 (6) | 0.60446 (4) | 0.07726 (4) | 0.04084 (15) | |
| O1 | 0.46124 (15) | 0.51884 (10) | 0.17919 (8) | 0.0254 (3) | |
| O2 | 0.42621 (16) | 0.75436 (10) | 0.15315 (9) | 0.0315 (3) | |
| H2 | 0.3575 (17) | 0.7980 (10) | 0.1454 (15) | 0.047* | |
| O3 | 0.48651 (16) | 0.61778 (10) | −0.02717 (8) | 0.0320 (3) | |
| O4 | 0.68239 (18) | 0.63508 (9) | −0.11936 (9) | 0.0305 (3) | |
| N1 | 0.67257 (18) | 0.64315 (11) | 0.10881 (9) | 0.0226 (3) | |
| C1 | 0.6259 (2) | 0.50535 (15) | 0.20204 (13) | 0.0319 (4) | |
| H1A | 0.6481 | 0.4381 | 0.2078 | 0.038* | |
| H1B | 0.6469 | 0.5356 | 0.2559 | 0.038* | |
| C2 | 0.7323 (2) | 0.54745 (14) | 0.13522 (13) | 0.0308 (4) | |
| H2A | 0.8398 | 0.5533 | 0.1571 | 0.037* | |
| H2B | 0.7353 | 0.5056 | 0.0866 | 0.037* | |
| C3 | 0.5816 (2) | 0.79707 (15) | 0.15957 (15) | 0.0367 (5) | |
| H3A | 0.5852 | 0.8407 | 0.2069 | 0.044* | |
| H3B | 0.6066 | 0.8318 | 0.1084 | 0.044* | |
| C4 | 0.6996 (2) | 0.71678 (15) | 0.17250 (13) | 0.0336 (4) | |
| H4A | 0.8075 | 0.7408 | 0.1677 | 0.040* | |
| H4B | 0.6865 | 0.6901 | 0.2285 | 0.040* | |
| C5 | 0.6287 (2) | 0.63779 (12) | −0.04522 (12) | 0.0240 (4) | |
| C6 | 0.7392 (2) | 0.66736 (15) | 0.02554 (11) | 0.0301 (4) | |
| H6A | 0.8412 | 0.6359 | 0.0186 | 0.036* | |
| H6B | 0.7571 | 0.7353 | 0.0226 | 0.036* | |
| H1 | 0.432 (3) | 0.468 (2) | 0.1653 (18) | 0.054 (9)* |
| Co1 | 0.01510 (14) | 0.02795 (15) | 0.02151 (15) | −0.00134 (9) | −0.00195 (9) | 0.00217 (9) |
| Cl1 | 0.0166 (2) | 0.0604 (3) | 0.0455 (3) | −0.0060 (2) | −0.0050 (2) | 0.0169 (3) |
| O1 | 0.0233 (6) | 0.0265 (7) | 0.0265 (7) | −0.0020 (5) | −0.0014 (5) | 0.0011 (5) |
| O2 | 0.0269 (7) | 0.0294 (7) | 0.0383 (8) | 0.0047 (5) | −0.0040 (6) | −0.0023 (6) |
| O3 | 0.0217 (7) | 0.0523 (9) | 0.0220 (7) | −0.0095 (6) | −0.0014 (5) | −0.0024 (6) |
| O4 | 0.0336 (7) | 0.0355 (7) | 0.0223 (7) | −0.0109 (6) | 0.0038 (6) | −0.0020 (5) |
| N1 | 0.0169 (7) | 0.0310 (8) | 0.0199 (7) | −0.0025 (6) | −0.0026 (6) | 0.0015 (6) |
| C1 | 0.0263 (9) | 0.0363 (10) | 0.0330 (10) | 0.0024 (8) | −0.0079 (8) | 0.0062 (8) |
| C2 | 0.0228 (9) | 0.0359 (10) | 0.0337 (10) | 0.0036 (8) | −0.0030 (8) | 0.0022 (8) |
| C3 | 0.0367 (11) | 0.0290 (10) | 0.0445 (12) | −0.0038 (8) | −0.0073 (9) | −0.0057 (9) |
| C4 | 0.0280 (10) | 0.0406 (11) | 0.0323 (10) | −0.0047 (8) | −0.0069 (8) | −0.0066 (8) |
| C5 | 0.0247 (8) | 0.0235 (8) | 0.0238 (9) | −0.0031 (7) | −0.0006 (7) | 0.0009 (7) |
| C6 | 0.0217 (8) | 0.0443 (11) | 0.0243 (9) | −0.0090 (8) | −0.0001 (7) | 0.0027 (8) |
| Co1—Cl1 | 2.2701 (6) | C1—H1A | 0.9700 |
| Co1—O1 | 2.0482 (13) | C1—H1B | 0.9700 |
| Co1—O2 | 2.0463 (14) | C1—C2 | 1.507 (3) |
| Co1—O3 | 2.0095 (14) | C2—H2A | 0.9700 |
| Co1—N1 | 2.1626 (15) | C2—H2B | 0.9700 |
| O1—C1 | 1.441 (2) | C3—H3A | 0.9700 |
| O1—H1 | 0.79 (3) | C3—H3B | 0.9700 |
| O2—H2 | 0.852 (9) | C3—C4 | 1.518 (3) |
| O2—C3 | 1.440 (2) | C4—H4A | 0.9700 |
| O3—C5 | 1.259 (2) | C4—H4B | 0.9700 |
| O4—C5 | 1.259 (2) | C5—C6 | 1.514 (3) |
| N1—C2 | 1.498 (2) | C6—H6A | 0.9700 |
| N1—C4 | 1.465 (2) | C6—H6B | 0.9700 |
| N1—C6 | 1.473 (2) | ||
| O1—Co1—Cl1 | 99.03 (4) | C2—C1—H1B | 109.7 |
| O1—Co1—N1 | 80.82 (6) | N1—C2—C1 | 110.66 (16) |
| O2—Co1—Cl1 | 101.63 (4) | N1—C2—H2A | 109.5 |
| O2—Co1—O1 | 110.19 (6) | N1—C2—H2B | 109.5 |
| O2—Co1—N1 | 79.33 (6) | C1—C2—H2A | 109.5 |
| O3—Co1—Cl1 | 99.28 (4) | C1—C2—H2B | 109.5 |
| O3—Co1—O1 | 122.70 (6) | H2A—C2—H2B | 108.1 |
| O3—Co1—O2 | 118.31 (6) | O2—C3—H3A | 110.4 |
| O3—Co1—N1 | 80.02 (6) | O2—C3—H3B | 110.4 |
| N1—Co1—Cl1 | 179.02 (5) | O2—C3—C4 | 106.80 (16) |
| Co1—O1—H1 | 115 (2) | H3A—C3—H3B | 108.6 |
| C1—O1—Co1 | 115.54 (11) | C4—C3—H3A | 110.4 |
| C1—O1—H1 | 104 (2) | C4—C3—H3B | 110.4 |
| Co1—O2—H2 | 123.6 (13) | N1—C4—C3 | 109.51 (16) |
| C3—O2—Co1 | 115.72 (12) | N1—C4—H4A | 109.8 |
| C3—O2—H2 | 108.8 (12) | N1—C4—H4B | 109.8 |
| C5—O3—Co1 | 118.44 (12) | C3—C4—H4A | 109.8 |
| C2—N1—Co1 | 104.78 (11) | C3—C4—H4B | 109.8 |
| C4—N1—Co1 | 108.01 (12) | H4A—C4—H4B | 108.2 |
| C4—N1—C2 | 113.16 (15) | O3—C5—C6 | 118.30 (16) |
| C4—N1—C6 | 113.21 (15) | O4—C5—O3 | 123.00 (17) |
| C6—N1—Co1 | 107.81 (11) | O4—C5—C6 | 118.69 (17) |
| C6—N1—C2 | 109.38 (15) | N1—C6—C5 | 111.54 (15) |
| O1—C1—H1A | 109.7 | N1—C6—H6A | 109.3 |
| O1—C1—H1B | 109.7 | N1—C6—H6B | 109.3 |
| O1—C1—C2 | 109.85 (15) | C5—C6—H6A | 109.3 |
| H1A—C1—H1B | 108.2 | C5—C6—H6B | 109.3 |
| C2—C1—H1A | 109.7 | H6A—C6—H6B | 108.0 |
| Co1—O1—C1—C2 | −21.0 (2) | O3—C5—C6—N1 | 15.5 (3) |
| Co1—O2—C3—C4 | −35.2 (2) | O4—C5—C6—N1 | −165.10 (16) |
| Co1—O3—C5—O4 | 179.97 (13) | C2—N1—C4—C3 | −156.64 (17) |
| Co1—O3—C5—C6 | −0.7 (2) | C2—N1—C6—C5 | 92.75 (18) |
| Co1—N1—C2—C1 | −44.47 (17) | C4—N1—C2—C1 | 73.0 (2) |
| Co1—N1—C4—C3 | −41.12 (19) | C4—N1—C6—C5 | −140.06 (17) |
| Co1—N1—C6—C5 | −20.64 (19) | C6—N1—C2—C1 | −159.82 (15) |
| O1—C1—C2—N1 | 44.4 (2) | C6—N1—C4—C3 | 78.2 (2) |
| O2—C3—C4—N1 | 49.9 (2) |
| H··· | ||||
| O2—H2···O4i | 0.85 (1) | 1.79 (1) | 2.6271 (19) | 165 (2) |
| O1—H1···O4ii | 0.79 (3) | 1.89 (3) | 2.6567 (19) | 165 (3) |