Literature DB >> 21588751

7-(2-Chloro-phen-yl)-2,6,9-trimethyl-dibenzo[b,h][1,6]naphthyridine.

K N Vennila, K Prabha, M Manoj, K J Rajendra Prasad, D Velmurugan.   

Abstract

In the title compound, C(25)H(19)ClN(2), the dibenzo[b,h][1,6]naphthyridine system is planar to within 0.16 (2) Å, and the chloro-phenyl ring is inclined to it by 82.53 (7)°. In the crystal, mol-ecules are linked by C-H⋯N hydrogen bonds, forming chains propagating in [100]. There are also a number of weak π-π stacking inter-actions present [centroid-centroid distances = 3.8531 (1) and 3.7631 (1) Å].

Entities:  

Year:  2010        PMID: 21588751      PMCID: PMC3007939          DOI: 10.1107/S1600536810030576

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of [1,6]naphthyridine derivatives, see: Zhuang et al. (2003 ▶); Bedard et al. (2003 ▶); Hinschberger et al. (2003 ▶); Naik et al. (2006 ▶). For the synthesis of the precursor of the title compound, see: Nandha Kumar et al. (2007 ▶). For the crystal structures of other naphthrydine derivatives, see: Sivakumar et al. (2003 ▶); Fun et al. (2009 ▶); Vennila et al. (2010 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C25H19ClN2 M = 382.87 Triclinic, a = 6.5575 (4) Å b = 10.6538 (7) Å c = 14.3522 (9) Å α = 93.755 (3)° β = 103.099 (3)° γ = 102.074 (3)° V = 948.25 (10) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 293 K 0.27 × 0.25 × 0.23 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.944, T max = 0.952 17317 measured reflections 4771 independent reflections 3514 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.143 S = 1.00 4771 reflections 255 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030576/su2198sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030576/su2198Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H19ClN2Z = 2
Mr = 382.87F(000) = 400
Triclinic, P1Dx = 1.341 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5575 (4) ÅCell parameters from 4797 reflections
b = 10.6538 (7) Åθ = 1.5–28.5°
c = 14.3522 (9) ŵ = 0.21 mm1
α = 93.755 (3)°T = 293 K
β = 103.099 (3)°Block, yellow
γ = 102.074 (3)°0.27 × 0.25 × 0.23 mm
V = 948.25 (10) Å3
Bruker SMART APEXII area-detector diffractometer4771 independent reflections
Radiation source: fine-focus sealed tube3514 reflections with I > 2σ(I)
graphiteRint = 0.025
ω and φ scansθmax = 28.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −8→8
Tmin = 0.944, Tmax = 0.952k = −14→14
17317 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0694P)2 + 0.2763P] where P = (Fo2 + 2Fc2)/3
4771 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.22259 (9)0.49217 (5)0.41457 (4)0.0809 (2)
C90.1060 (2)0.63949 (13)0.20011 (10)0.0345 (3)
C14−0.0361 (2)0.61889 (13)0.25997 (11)0.0354 (3)
N110.1756 (2)0.87266 (11)0.24184 (9)0.0396 (3)
C100.2149 (2)0.77063 (13)0.19709 (10)0.0353 (3)
C13−0.0816 (2)0.72702 (14)0.30668 (11)0.0371 (3)
C60.3810 (2)0.79371 (14)0.14465 (10)0.0367 (3)
C10.4188 (2)0.68758 (14)0.09475 (11)0.0382 (3)
C120.0265 (2)0.85236 (14)0.29330 (11)0.0379 (3)
N70.2977 (2)0.56271 (12)0.09035 (9)0.0405 (3)
C50.5087 (3)0.91727 (15)0.14455 (12)0.0427 (3)
H50.48290.98850.17700.051*
C21−0.1424 (2)0.48827 (13)0.28004 (11)0.0383 (3)
C15−0.2299 (3)0.71701 (15)0.36619 (12)0.0426 (3)
H15−0.29830.63560.37700.051*
C20.5826 (3)0.70513 (17)0.04574 (13)0.0478 (4)
H20.60750.63470.01190.057*
C18−0.0219 (3)0.96186 (15)0.33756 (12)0.0459 (4)
H180.04651.04440.32890.055*
C80.1537 (2)0.53873 (14)0.13957 (11)0.0376 (3)
C16−0.2740 (3)0.82394 (16)0.40769 (12)0.0435 (4)
C40.6710 (3)0.93469 (16)0.09730 (12)0.0463 (4)
C26−0.0401 (3)0.42446 (15)0.35054 (12)0.0450 (4)
C17−0.1666 (3)0.94743 (16)0.39226 (12)0.0471 (4)
H17−0.19601.02060.42040.057*
C22−0.3525 (3)0.42820 (16)0.23021 (15)0.0529 (4)
H22−0.42730.46930.18330.063*
C30.7064 (3)0.82702 (17)0.04798 (13)0.0512 (4)
H30.81620.83810.01600.061*
C23−0.4512 (3)0.30820 (18)0.24972 (17)0.0622 (5)
H23−0.59000.26840.21460.075*
C190.0335 (3)0.39954 (15)0.12548 (14)0.0502 (4)
H19A0.07900.35200.07790.075*
H19B−0.11810.39420.10430.075*
H19C0.06300.36350.18530.075*
C25−0.1401 (3)0.30526 (16)0.37131 (14)0.0563 (5)
H25−0.06830.26460.41950.068*
C24−0.3463 (3)0.24775 (17)0.32009 (15)0.0583 (5)
H24−0.41440.16760.33340.070*
C200.8124 (3)1.06674 (18)0.10020 (15)0.0613 (5)
H20A0.91611.06060.06350.092*0.50
H20B0.88571.09990.16580.092*0.50
H20C0.72541.12390.07320.092*0.50
H20D0.76871.12900.13820.092*0.50
H20E0.79921.08970.03590.092*0.50
H20F0.95941.06570.12840.092*0.50
C27−0.4337 (3)0.81378 (19)0.46916 (15)0.0603 (5)
H27A−0.57160.81790.43030.090*
H27B−0.38580.88390.52030.090*
H27C−0.44540.73310.49600.090*
U11U22U33U12U13U23
Cl10.0751 (4)0.0620 (3)0.0805 (4)−0.0032 (2)−0.0189 (3)0.0237 (3)
C90.0369 (7)0.0290 (6)0.0383 (7)0.0081 (5)0.0095 (6)0.0067 (5)
C140.0374 (7)0.0284 (7)0.0415 (8)0.0080 (5)0.0105 (6)0.0080 (6)
N110.0477 (7)0.0294 (6)0.0430 (7)0.0072 (5)0.0149 (6)0.0055 (5)
C100.0388 (7)0.0309 (7)0.0359 (7)0.0069 (6)0.0089 (6)0.0071 (5)
C130.0415 (8)0.0318 (7)0.0391 (8)0.0092 (6)0.0111 (6)0.0063 (6)
C60.0393 (7)0.0333 (7)0.0366 (7)0.0048 (6)0.0098 (6)0.0074 (6)
C10.0400 (8)0.0353 (7)0.0388 (8)0.0057 (6)0.0110 (6)0.0062 (6)
C120.0451 (8)0.0318 (7)0.0372 (7)0.0093 (6)0.0103 (6)0.0051 (6)
N70.0450 (7)0.0326 (6)0.0461 (7)0.0072 (5)0.0171 (6)0.0044 (5)
C50.0490 (9)0.0339 (7)0.0428 (8)0.0014 (6)0.0137 (7)0.0050 (6)
C210.0423 (8)0.0293 (7)0.0478 (8)0.0088 (6)0.0194 (6)0.0061 (6)
C150.0464 (8)0.0366 (8)0.0481 (9)0.0089 (6)0.0180 (7)0.0078 (6)
C20.0514 (9)0.0449 (9)0.0506 (9)0.0080 (7)0.0230 (7)0.0033 (7)
C180.0616 (10)0.0308 (7)0.0475 (9)0.0104 (7)0.0181 (8)0.0046 (6)
C80.0411 (8)0.0308 (7)0.0416 (8)0.0083 (6)0.0114 (6)0.0057 (6)
C160.0455 (8)0.0433 (8)0.0435 (8)0.0122 (7)0.0131 (7)0.0031 (7)
C40.0469 (9)0.0426 (8)0.0446 (9)−0.0026 (7)0.0128 (7)0.0081 (7)
C260.0552 (9)0.0343 (7)0.0445 (9)0.0064 (7)0.0134 (7)0.0069 (6)
C170.0599 (10)0.0380 (8)0.0470 (9)0.0170 (7)0.0165 (8)0.0001 (7)
C220.0446 (9)0.0416 (9)0.0728 (12)0.0090 (7)0.0142 (8)0.0142 (8)
C30.0487 (9)0.0539 (10)0.0520 (10)0.0013 (7)0.0239 (8)0.0071 (8)
C230.0433 (9)0.0473 (10)0.0937 (15)−0.0002 (8)0.0221 (10)0.0087 (10)
C190.0589 (10)0.0321 (7)0.0617 (11)0.0036 (7)0.0268 (8)−0.0009 (7)
C250.0803 (13)0.0368 (8)0.0536 (10)0.0088 (8)0.0216 (9)0.0145 (7)
C240.0701 (12)0.0359 (8)0.0749 (13)0.0029 (8)0.0367 (10)0.0121 (8)
C200.0643 (12)0.0476 (10)0.0667 (12)−0.0099 (8)0.0265 (10)0.0076 (9)
C270.0630 (11)0.0554 (11)0.0694 (12)0.0128 (9)0.0334 (10)−0.0011 (9)
Cl1—C261.7342 (18)C8—C191.504 (2)
C9—C141.399 (2)C16—C171.413 (2)
C9—C101.4381 (19)C16—C271.507 (2)
C9—C81.465 (2)C4—C31.397 (2)
C14—C131.414 (2)C4—C201.507 (2)
C14—C211.4978 (19)C26—C251.386 (2)
N11—C101.3272 (18)C17—H170.9300
N11—C121.3449 (19)C22—C231.384 (2)
C10—C61.448 (2)C22—H220.9300
C13—C121.422 (2)C3—H30.9300
C13—C151.425 (2)C23—C241.365 (3)
C6—C11.395 (2)C23—H230.9300
C6—C51.405 (2)C19—H19A0.9600
C1—N71.3888 (19)C19—H19B0.9600
C1—C21.399 (2)C19—H19C0.9600
C12—C181.419 (2)C25—C241.374 (3)
N7—C81.2966 (19)C25—H250.9300
C5—C41.374 (2)C24—H240.9300
C5—H50.9300C20—H20A0.9600
C21—C261.382 (2)C20—H20B0.9600
C21—C221.394 (2)C20—H20C0.9600
C15—C161.365 (2)C20—H20D0.9600
C15—H150.9300C20—H20E0.9600
C2—C31.374 (2)C20—H20F0.9600
C2—H20.9300C27—H27A0.9600
C18—C171.353 (2)C27—H27B0.9600
C18—H180.9300C27—H27C0.9600
C14—C9—C10117.59 (12)C18—C17—H17119.2
C14—C9—C8125.62 (13)C16—C17—H17119.2
C10—C9—C8116.79 (13)C23—C22—C21120.83 (17)
C9—C14—C13118.93 (13)C23—C22—H22119.6
C9—C14—C21124.24 (12)C21—C22—H22119.6
C13—C14—C21116.82 (13)C2—C3—C4121.42 (15)
C10—N11—C12118.23 (12)C2—C3—H3119.3
N11—C10—C9123.65 (13)C4—C3—H3119.3
N11—C10—C6117.60 (13)C24—C23—C22120.50 (18)
C9—C10—C6118.73 (12)C24—C23—H23119.8
C14—C13—C12118.07 (13)C22—C23—H23119.8
C14—C13—C15123.54 (13)C8—C19—H19A109.5
C12—C13—C15118.39 (13)C8—C19—H19B109.5
C1—C6—C5119.07 (14)H19A—C19—H19B109.5
C1—C6—C10118.10 (13)C8—C19—H19C109.5
C5—C6—C10122.80 (14)H19A—C19—H19C109.5
N7—C1—C6122.51 (13)H19B—C19—H19C109.5
N7—C1—C2117.55 (13)C24—C25—C26119.42 (17)
C6—C1—C2119.94 (14)C24—C25—H25120.3
N11—C12—C18118.06 (13)C26—C25—H25120.3
N11—C12—C13123.19 (13)C23—C24—C25120.02 (16)
C18—C12—C13118.73 (14)C23—C24—H24120.0
C8—N7—C1120.50 (13)C25—C24—H24120.0
C4—C5—C6121.15 (15)C4—C20—H20A109.5
C4—C5—H5119.4C4—C20—H20B109.5
C6—C5—H5119.4H20A—C20—H20B109.5
C26—C21—C22117.31 (14)C4—C20—H20C109.5
C26—C21—C14121.67 (14)H20A—C20—H20C109.5
C22—C21—C14120.98 (14)H20B—C20—H20C109.5
C16—C15—C13121.68 (15)C4—C20—H20D109.5
C16—C15—H15119.2H20A—C20—H20D141.1
C13—C15—H15119.2H20B—C20—H20D56.3
C3—C2—C1119.59 (15)H20C—C20—H20D56.3
C3—C2—H2120.2C4—C20—H20E109.5
C1—C2—H2120.2H20A—C20—H20E56.3
C17—C18—C12120.70 (15)H20B—C20—H20E141.1
C17—C18—H18119.6H20C—C20—H20E56.3
C12—C18—H18119.6H20D—C20—H20E109.5
N7—C8—C9122.88 (13)C4—C20—H20F109.5
N7—C8—C19114.02 (13)H20A—C20—H20F56.3
C9—C8—C19123.05 (13)H20B—C20—H20F56.3
C15—C16—C17118.83 (15)H20C—C20—H20F141.1
C15—C16—C27121.87 (15)H20D—C20—H20F109.5
C17—C16—C27119.31 (14)H20E—C20—H20F109.5
C5—C4—C3118.82 (15)C16—C27—H27A109.5
C5—C4—C20120.96 (16)C16—C27—H27B109.5
C3—C4—C20120.20 (15)H27A—C27—H27B109.5
C21—C26—C25121.90 (16)C16—C27—H27C109.5
C21—C26—Cl1119.98 (12)H27A—C27—H27C109.5
C25—C26—Cl1118.11 (14)H27B—C27—H27C109.5
C18—C17—C16121.65 (14)
C10—C9—C14—C136.1 (2)C13—C14—C21—C2282.85 (19)
C8—C9—C14—C13−173.70 (13)C14—C13—C15—C16−178.02 (15)
C10—C9—C14—C21−172.70 (13)C12—C13—C15—C161.9 (2)
C8—C9—C14—C217.5 (2)N7—C1—C2—C3179.93 (16)
C12—N11—C10—C90.4 (2)C6—C1—C2—C30.6 (3)
C12—N11—C10—C6−177.97 (13)N11—C12—C18—C17−178.30 (15)
C14—C9—C10—N11−5.4 (2)C13—C12—C18—C170.6 (2)
C8—C9—C10—N11174.47 (13)C1—N7—C8—C91.4 (2)
C14—C9—C10—C6172.95 (13)C1—N7—C8—C19178.83 (14)
C8—C9—C10—C6−7.2 (2)C14—C9—C8—N7−175.27 (14)
C9—C14—C13—C12−2.4 (2)C10—C9—C8—N74.9 (2)
C21—C14—C13—C12176.51 (13)C14—C9—C8—C197.5 (2)
C9—C14—C13—C15177.54 (14)C10—C9—C8—C19−172.28 (14)
C21—C14—C13—C15−3.6 (2)C13—C15—C16—C17−1.1 (2)
N11—C10—C6—C1−177.95 (13)C13—C15—C16—C27178.85 (16)
C9—C10—C6—C13.6 (2)C6—C5—C4—C30.6 (3)
N11—C10—C6—C54.1 (2)C6—C5—C4—C20−177.91 (16)
C9—C10—C6—C5−174.35 (14)C22—C21—C26—C250.3 (2)
C5—C6—C1—N7−179.11 (14)C14—C21—C26—C25178.09 (15)
C10—C6—C1—N72.8 (2)C22—C21—C26—Cl1179.19 (13)
C5—C6—C1—C20.1 (2)C14—C21—C26—Cl1−3.0 (2)
C10—C6—C1—C2−177.91 (14)C12—C18—C17—C160.2 (3)
C10—N11—C12—C18−177.28 (14)C15—C16—C17—C180.0 (3)
C10—N11—C12—C133.8 (2)C27—C16—C17—C18−179.91 (17)
C14—C13—C12—N11−2.8 (2)C26—C21—C22—C23−1.4 (3)
C15—C13—C12—N11177.25 (14)C14—C21—C22—C23−179.24 (16)
C14—C13—C12—C18178.29 (14)C1—C2—C3—C4−0.8 (3)
C15—C13—C12—C18−1.6 (2)C5—C4—C3—C20.2 (3)
C6—C1—N7—C8−5.5 (2)C20—C4—C3—C2178.72 (18)
C2—C1—N7—C8175.23 (15)C21—C22—C23—C241.7 (3)
C1—C6—C5—C4−0.8 (2)C21—C26—C25—C240.6 (3)
C10—C6—C5—C4177.17 (14)Cl1—C26—C25—C24−178.38 (14)
C9—C14—C21—C2683.9 (2)C22—C23—C24—C25−0.9 (3)
C13—C14—C21—C26−94.89 (17)C26—C25—C24—C23−0.3 (3)
C9—C14—C21—C22−98.31 (19)
D—H···AD—HH···AD···AD—H···A
C22—H22···N7i0.932.423.318 (2)162
Cg(I)Cg(J)Centroid-to-Centroid
Cg(2)Cg(3i)3.8531 (1)
Cg(3)Cg(2ii)3.8531 (1)
Cg(3)Cg(4ii)3.7631 (1)
Cg(4)Cg(3i)3.7631 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C22—H22⋯N7i0.932.423.318 (2)162

Symmetry code: (i) .

  8 in total

1.  2-nitroso-1,3-diphenyl-1,2,3,4-tetrahydrobenzo[b][1,6]naphthyridine.

Authors:  B Sivakumar; K SethuSankar; U P Senthil Kumar; R Jeyaraman; D Velmurugan
Journal:  Acta Crystallogr C       Date:  2003-02-18       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Antiviral properties of a series of 1,6-naphthyridine and 7, 8-dihydroisoquinoline derivatives exhibiting potent activity against human cytomegalovirus.

Authors:  J Bedard; S May; L L'Heureux; T Stamminger; A Copsey; J Drach; J Huffman; L Chan; H Jin; R F Rando
Journal:  Antimicrob Agents Chemother       Date:  2000-04       Impact factor: 5.191

4.  Design and synthesis of 8-hydroxy-[1,6]naphthyridines as novel inhibitors of HIV-1 integrase in vitro and in infected cells.

Authors:  Linghang Zhuang; John S Wai; Mark W Embrey; Thorsten E Fisher; Melissa S Egbertson; Linda S Payne; James P Guare; Joseph P Vacca; Daria J Hazuda; Peter J Felock; Abigail L Wolfe; Kara A Stillmock; Marc V Witmer; Gregory Moyer; William A Schleif; Lori J Gabryelski; Yvonne M Leonard; Joseph J Lynch; Stuart R Michelson; Steven D Young
Journal:  J Med Chem       Date:  2003-02-13       Impact factor: 7.446

5.  2,7-Dimethyl-1,8-naphthyridine.

Authors:  Hoong-Kun Fun; Chin Sing Yeap; Nirmal Kumar Das; Ajit Kumar Mahapatra; Shyamaprosad Goswami
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

6.  New benzo[h][1,6]naphthyridine and azepino[3,2-c]quinoline derivatives as selective antagonists of 5-HT4 receptors: binding profile and pharmacological characterization.

Authors:  Antoine Hinschberger; Sabrina Butt; Véronique Lelong; Michel Boulouard; Aline Dumuis; François Dauphin; Ronan Bureau; Bruno Pfeiffer; Pierre Renard; Sylvain Rault
Journal:  J Med Chem       Date:  2003-01-02       Impact factor: 7.446

7.  2-Chloro-7-methyl-12-phenyldibenzo[b,g][1,8]naphthyridin-11(6H)-one.

Authors:  K N Vennila; K Prabha; M Manoj; K J Rajendra Prasad; D Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  2,9-Dimethyl-7-phenyl-N-(4-methyl-phen-yl)dibenzo[b,h][1,6]naphthyridin-6-amine.

Authors:  K N Vennila; M Manoj; K Prabha; K J Rajendra Prasad; D Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

2.  7-(4-Meth-oxy-phen-yl)-4,9-dimethyl-N-(4-methyl-phen-yl)-5,12-diaza-tetra-phen-6-amine.

Authors:  K N Vennila; K Prabha; K J Rajendra Prasad; D Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-02
  2 in total

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