Literature DB >> 21588030

2-Chloro-7-methyl-12-phenyldibenzo[b,g][1,8]naphthyridin-11(6H)-one.

K N Vennila, K Prabha, M Manoj, K J Rajendra Prasad, D Velmurugan.   

Abstract

In the title compound, C(23)H(15)ClN(2)O, the fused ring system is planar: the deviation of all the non-H atoms from the plane through all four fused rings is less than 0.31 Å. The plane of the phenyl ring is inclined at 71.78 (5)° to the mean plane of the 1,8-naphthrydine ring system. The crystal structure is devoid of any classical hydrogen bonds but π-π inter-actions are present.

Entities:  

Year:  2010        PMID: 21588030      PMCID: PMC3007064          DOI: 10.1107/S160053681002430X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of [1,8]naphthyridine derivatives, see: Egawa et al. (1984 ▶); Cooper et al. (1992 ▶); Chen et al. (1997) ▶; Balin & Tan (1984 ▶); Nadaraj et al. (2009 ▶); Kuroda et al. (1992 ▶). For the synthesis of the title compound, see: Manoj et al. (2009 ▶). For the crystal structures of other naphthrydine derivatives, see: Sivakumar et al. (2003 ▶); Seebacher et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C23H15ClN2O M = 370.82 Triclinic, a = 8.2434 (2) Å b = 8.5528 (2) Å c = 13.0740 (3) Å α = 89.446 (1)° β = 74.362 (1)° γ = 77.672 (1)° V = 866.06 (4) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 293 K 0.25 × 0.24 × 0.23 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.943, T max = 0.947 21083 measured reflections 5019 independent reflections 4047 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.138 S = 1.00 5019 reflections 245 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002430X/su2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002430X/su2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H15ClN2OZ = 2
Mr = 370.82F(000) = 384
Triclinic, P1Dx = 1.422 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2434 (2) ÅCell parameters from 5019 reflections
b = 8.5528 (2) Åθ = 1.6–30.0°
c = 13.0740 (3) ŵ = 0.24 mm1
α = 89.446 (1)°T = 293 K
β = 74.362 (1)°Block, pale yellow
γ = 77.672 (1)°0.25 × 0.24 × 0.23 mm
V = 866.06 (4) Å3
Bruker SMART APEXII area-detector diffractometer5019 independent reflections
Radiation source: fine-focus sealed tube4047 reflections with I > 2σ(I)
graphiteRint = 0.025
ω and φ scansθmax = 30.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −11→11
Tmin = 0.943, Tmax = 0.947k = −12→12
21083 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0812P)2 + 0.1735P] where P = (Fo2 + 2Fc2)/3
5019 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.43107 (6)0.82442 (6)0.41605 (3)0.06692 (16)
C80.97978 (14)0.28540 (13)0.08976 (9)0.0295 (2)
N10.75659 (13)0.43848 (12)0.01596 (8)0.0347 (2)
C60.75767 (14)0.49589 (13)0.19809 (9)0.0321 (2)
C70.91173 (14)0.37615 (13)0.18528 (9)0.0303 (2)
C111.19508 (14)0.07433 (13)−0.03719 (9)0.0318 (2)
N20.96411 (13)0.24442 (12)−0.08970 (8)0.0349 (2)
H20.91040.2694−0.13760.042*
C50.68564 (14)0.52218 (14)0.11069 (9)0.0329 (2)
C90.89694 (14)0.32538 (13)0.00739 (9)0.0298 (2)
O11.18861 (13)0.08963 (12)0.14332 (7)0.0456 (2)
C161.17758 (17)0.05651 (15)−0.22018 (10)0.0375 (3)
C121.12754 (15)0.14578 (14)0.07187 (9)0.0318 (2)
C101.11201 (14)0.12564 (13)−0.11549 (9)0.0317 (2)
C151.32690 (18)−0.06129 (16)−0.24169 (11)0.0443 (3)
H151.3730−0.1075−0.31030.053*
C191.15161 (16)0.40958 (15)0.25824 (10)0.0390 (3)
H191.19850.45510.19530.047*
C180.99944 (15)0.35745 (14)0.27169 (9)0.0334 (2)
C131.34488 (16)−0.04709 (15)−0.06305 (11)0.0392 (3)
H131.3998−0.0829−0.01100.047*
C10.67473 (16)0.59156 (15)0.29368 (10)0.0388 (3)
H10.71900.57540.35220.047*
C40.53475 (16)0.64433 (16)0.12077 (12)0.0423 (3)
H40.48680.66190.06380.051*
C230.92949 (19)0.29264 (18)0.36673 (11)0.0451 (3)
H230.82520.26110.37750.054*
C171.0871 (2)0.11093 (18)−0.30353 (10)0.0472 (3)
H17A1.16010.0680−0.37210.071*
H17B1.06160.2259−0.30300.071*
H17C0.98150.0738−0.28900.071*
C20.53032 (17)0.70682 (16)0.29904 (11)0.0424 (3)
C201.23394 (19)0.39418 (18)0.33819 (12)0.0494 (3)
H201.33510.43080.32930.059*
C211.1663 (2)0.3246 (2)0.43107 (12)0.0584 (4)
H211.22370.31140.48390.070*
C141.41133 (18)−0.11368 (17)−0.16453 (12)0.0465 (3)
H141.5121−0.1933−0.18180.056*
C221.0139 (2)0.2747 (2)0.44566 (12)0.0584 (4)
H220.96780.22880.50860.070*
C30.45924 (17)0.73618 (17)0.21266 (13)0.0468 (3)
H30.36180.81740.21810.056*
U11U22U33U12U13U23
Cl10.0572 (2)0.0680 (3)0.0571 (2)0.00139 (19)0.00421 (18)−0.01642 (19)
C80.0295 (5)0.0310 (5)0.0304 (5)−0.0063 (4)−0.0127 (4)0.0058 (4)
N10.0342 (5)0.0353 (5)0.0368 (5)−0.0039 (4)−0.0166 (4)0.0056 (4)
C60.0303 (5)0.0321 (5)0.0349 (5)−0.0068 (4)−0.0106 (4)0.0034 (4)
C70.0309 (5)0.0330 (5)0.0305 (5)−0.0087 (4)−0.0130 (4)0.0063 (4)
C110.0307 (5)0.0314 (5)0.0345 (5)−0.0076 (4)−0.0103 (4)0.0035 (4)
N20.0372 (5)0.0389 (5)0.0299 (5)−0.0033 (4)−0.0155 (4)0.0034 (4)
C50.0309 (5)0.0322 (5)0.0382 (6)−0.0067 (4)−0.0140 (4)0.0053 (4)
C90.0318 (5)0.0313 (5)0.0298 (5)−0.0080 (4)−0.0133 (4)0.0066 (4)
O10.0491 (5)0.0473 (5)0.0404 (5)0.0056 (4)−0.0247 (4)0.0027 (4)
C160.0418 (6)0.0399 (6)0.0325 (6)−0.0139 (5)−0.0091 (5)0.0031 (4)
C120.0315 (5)0.0326 (5)0.0340 (5)−0.0059 (4)−0.0143 (4)0.0053 (4)
C100.0320 (5)0.0317 (5)0.0324 (5)−0.0092 (4)−0.0091 (4)0.0041 (4)
C150.0437 (7)0.0443 (7)0.0405 (6)−0.0096 (5)−0.0038 (5)−0.0056 (5)
C190.0381 (6)0.0406 (6)0.0405 (6)−0.0065 (5)−0.0159 (5)0.0020 (5)
C180.0359 (5)0.0350 (5)0.0305 (5)−0.0035 (4)−0.0144 (4)0.0003 (4)
C130.0341 (6)0.0363 (6)0.0474 (7)−0.0034 (4)−0.0147 (5)0.0014 (5)
C10.0369 (6)0.0410 (6)0.0377 (6)−0.0077 (5)−0.0092 (5)−0.0008 (5)
C40.0352 (6)0.0403 (6)0.0525 (7)−0.0018 (5)−0.0190 (5)0.0055 (5)
C230.0489 (7)0.0552 (8)0.0357 (6)−0.0156 (6)−0.0161 (5)0.0082 (5)
C170.0581 (8)0.0523 (7)0.0315 (6)−0.0100 (6)−0.0144 (6)0.0013 (5)
C20.0353 (6)0.0403 (6)0.0466 (7)−0.0070 (5)−0.0033 (5)−0.0034 (5)
C200.0447 (7)0.0542 (8)0.0553 (8)−0.0081 (6)−0.0259 (6)−0.0069 (6)
C210.0677 (10)0.0708 (10)0.0445 (8)−0.0060 (8)−0.0353 (7)−0.0027 (7)
C140.0369 (6)0.0438 (7)0.0534 (8)−0.0012 (5)−0.0088 (6)−0.0056 (6)
C220.0709 (10)0.0748 (11)0.0352 (7)−0.0160 (8)−0.0242 (7)0.0126 (7)
C30.0319 (6)0.0414 (7)0.0624 (9)−0.0008 (5)−0.0106 (6)0.0006 (6)
Cl1—C21.7392 (14)C19—C201.3828 (18)
C8—C71.3899 (15)C19—C181.3863 (17)
C8—C91.4256 (14)C19—H190.9300
C8—C121.4816 (15)C18—C231.3859 (18)
N1—C91.3196 (14)C13—C141.3690 (19)
N1—C51.3551 (15)C13—H130.9300
C6—C51.4187 (16)C1—C21.3598 (18)
C6—C11.4210 (16)C1—H10.9300
C6—C71.4223 (15)C4—C31.362 (2)
C7—C181.4873 (15)C4—H40.9300
C11—C101.3965 (16)C23—C221.3824 (19)
C11—C131.3971 (16)C23—H230.9300
C11—C121.4697 (16)C17—H17A0.9600
N2—C91.3681 (15)C17—H17B0.9600
N2—C101.3741 (15)C17—H17C0.9600
N2—H20.8600C2—C31.404 (2)
C5—C41.4197 (16)C20—C211.379 (2)
O1—C121.2240 (14)C20—H200.9300
C16—C151.3780 (18)C21—C221.376 (2)
C16—C101.4126 (16)C21—H210.9300
C16—C171.4970 (18)C14—H140.9300
C15—C141.393 (2)C22—H220.9300
C15—H150.9300C3—H30.9300
C7—C8—C9117.71 (10)C23—C18—C7121.22 (11)
C7—C8—C12123.22 (9)C19—C18—C7119.52 (10)
C9—C8—C12119.00 (10)C14—C13—C11120.42 (12)
C9—N1—C5117.25 (10)C14—C13—H13119.8
C5—C6—C1118.78 (10)C11—C13—H13119.8
C5—C6—C7118.27 (10)C2—C1—C6119.61 (12)
C1—C6—C7122.95 (10)C2—C1—H1120.2
C8—C7—C6118.53 (10)C6—C1—H1120.2
C8—C7—C18122.12 (10)C3—C4—C5120.95 (12)
C6—C7—C18119.28 (10)C3—C4—H4119.5
C10—C11—C13119.38 (11)C5—C4—H4119.5
C10—C11—C12121.14 (10)C22—C23—C18120.35 (13)
C13—C11—C12119.48 (11)C22—C23—H23119.8
C9—N2—C10124.08 (10)C18—C23—H23119.8
C9—N2—H2118.0C16—C17—H17A109.5
C10—N2—H2118.0C16—C17—H17B109.5
N1—C5—C6123.07 (10)H17A—C17—H17B109.5
N1—C5—C4117.74 (11)C16—C17—H17C109.5
C6—C5—C4119.16 (11)H17A—C17—H17C109.5
N1—C9—N2115.15 (10)H17B—C17—H17C109.5
N1—C9—C8125.05 (10)C1—C2—C3122.28 (12)
N2—C9—C8119.80 (10)C1—C2—Cl1119.20 (11)
C15—C16—C10117.34 (11)C3—C2—Cl1118.51 (10)
C15—C16—C17122.02 (12)C21—C20—C19120.08 (13)
C10—C16—C17120.64 (11)C21—C20—H20120.0
O1—C12—C11121.25 (11)C19—C20—H20120.0
O1—C12—C8122.72 (11)C22—C21—C20120.06 (13)
C11—C12—C8116.02 (9)C22—C21—H21120.0
N2—C10—C11119.27 (10)C20—C21—H21120.0
N2—C10—C16119.86 (11)C13—C14—C15119.50 (12)
C11—C10—C16120.87 (11)C13—C14—H14120.3
C16—C15—C14122.47 (12)C15—C14—H14120.3
C16—C15—H15118.8C21—C22—C23120.02 (14)
C14—C15—H15118.8C21—C22—H22120.0
C20—C19—C18120.20 (13)C23—C22—H22120.0
C20—C19—H19119.9C4—C3—C2119.20 (12)
C18—C19—H19119.9C4—C3—H3120.4
C23—C18—C19119.24 (11)C2—C3—H3120.4
C9—C8—C7—C64.14 (15)C13—C11—C10—C16−0.06 (17)
C12—C8—C7—C6−172.83 (10)C12—C11—C10—C16179.99 (10)
C9—C8—C7—C18−172.72 (10)C15—C16—C10—N2179.56 (11)
C12—C8—C7—C1810.31 (17)C17—C16—C10—N2−0.24 (17)
C5—C6—C7—C8−3.06 (16)C15—C16—C10—C11−0.77 (17)
C1—C6—C7—C8177.96 (10)C17—C16—C10—C11179.43 (11)
C5—C6—C7—C18173.90 (10)C10—C16—C15—C140.73 (19)
C1—C6—C7—C18−5.09 (17)C17—C16—C15—C14−179.47 (13)
C9—N1—C5—C61.61 (17)C20—C19—C18—C231.18 (19)
C9—N1—C5—C4179.91 (10)C20—C19—C18—C7179.49 (12)
C1—C6—C5—N1179.14 (11)C8—C7—C18—C23−111.25 (14)
C7—C6—C5—N10.11 (17)C6—C7—C18—C2371.91 (15)
C1—C6—C5—C40.86 (17)C8—C7—C18—C1970.48 (15)
C7—C6—C5—C4−178.16 (10)C6—C7—C18—C19−106.37 (13)
C5—N1—C9—N2−179.86 (10)C10—C11—C13—C140.97 (19)
C5—N1—C9—C8−0.39 (17)C12—C11—C13—C14−179.07 (11)
C10—N2—C9—N1178.18 (10)C5—C6—C1—C2−0.80 (18)
C10—N2—C9—C8−1.32 (17)C7—C6—C1—C2178.18 (11)
C7—C8—C9—N1−2.55 (17)N1—C5—C4—C3−178.17 (12)
C12—C8—C9—N1174.55 (10)C6—C5—C4—C30.19 (19)
C7—C8—C9—N2176.90 (10)C19—C18—C23—C22−2.4 (2)
C12—C8—C9—N2−6.00 (16)C7—C18—C23—C22179.30 (13)
C10—C11—C12—O1171.91 (11)C6—C1—C2—C3−0.3 (2)
C13—C11—C12—O1−8.05 (17)C6—C1—C2—Cl1−179.41 (9)
C10—C11—C12—C8−6.49 (16)C18—C19—C20—C211.0 (2)
C13—C11—C12—C8173.55 (10)C19—C20—C21—C22−1.9 (2)
C7—C8—C12—O18.09 (18)C11—C13—C14—C15−1.0 (2)
C9—C8—C12—O1−168.84 (11)C16—C15—C14—C130.2 (2)
C7—C8—C12—C11−173.54 (10)C20—C21—C22—C230.7 (3)
C9—C8—C12—C119.53 (15)C18—C23—C22—C211.5 (2)
C9—N2—C10—C114.61 (17)C5—C4—C3—C2−1.3 (2)
C9—N2—C10—C16−175.71 (10)C1—C2—C3—C41.4 (2)
C13—C11—C10—N2179.62 (11)Cl1—C2—C3—C4−179.52 (11)
C12—C11—C10—N2−0.34 (17)
Cg1···Cg2i3.7936 (6)
Cg1···Cg4ii3.7721 (7)
Cg2···Cg1i3.7935 (6)
Cg2···Cg2ii3.6542 (6)
Cg2···Cg3i3.8725 (7)
Cg2···Cg4ii3.5506 (7)
Cg3···Cg2i3.8725 (7)
Cg3···Cg4ii3.6485 (8)
Table 1

π–π inter­actions (Å).

Cg1–Cg4 are the centroids of the N1/C5–C9, N2/C8–C12, C1–C6 and C10—C16 rings, respectively.

Cg1⋯Cg2i3.7936 (6)
Cg1⋯Cg4ii3.7721 (7)
Cg2⋯Cg1i3.7935 (6)
Cg2⋯Cg2ii3.6542 (6)
Cg2⋯Cg3i3.8725 (7)
Cg2⋯Cg4ii3.5506 (7)
Cg3⋯Cg2i3.8725 (7)
Cg3⋯Cg4ii3.6485 (8)

Symmetry codes: (i) −x + 2, −y + 1, −z; (ii) −x + 2, −y, −z.

  9 in total

1.  2-nitroso-1,3-diphenyl-1,2,3,4-tetrahydrobenzo[b][1,6]naphthyridine.

Authors:  B Sivakumar; K SethuSankar; U P Senthil Kumar; R Jeyaraman; D Velmurugan
Journal:  Acta Crystallogr C       Date:  2003-02-18       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Preparation and in vitro and in vivo evaluation of quinolones with selective activity against gram-positive organisms.

Authors:  C S Cooper; P L Klock; D T Chu; D J Hardy; R N Swanson; J J Plattner
Journal:  J Med Chem       Date:  1992-04-17       Impact factor: 7.446

4.  Antitumor agents. 178. Synthesis and biological evaluation of substituted 2-aryl-1,8-naphthyridin-4(1H)-ones as antitumor agents that inhibit tubulin polymerization.

Authors:  K Chen; S C Kuo; M C Hsieh; A Mauger; C M Lin; E Hamel; K H Lee
Journal:  J Med Chem       Date:  1997-09-12       Impact factor: 7.446

5.  A novel synthesis and potent antiinflammatory activity of 4-hydroxy-2(1H)-oxo-1-phenyl-1,8-naphthyridine-3-carboxamides.

Authors:  T Kuroda; F Suzuki; T Tamura; K Ohmori; H Hosoe
Journal:  J Med Chem       Date:  1992-03-20       Impact factor: 7.446

6.  Pyridonecarboxylic acids as antibacterial agents. 4. Synthesis and antibacterial activity of 7-(3-amino-1-pyrrolidinyl)-1-ethyl-6-fluoro-1,4 -dihydro-4-oxo-1,8-naphthyridine-3-carboxylic acid and its analogues.

Authors:  H Egawa; T Miyamoto; A Minamida; Y Nishimura; H Okada; H Uno; J Matsumoto
Journal:  J Med Chem       Date:  1984-12       Impact factor: 7.446

7.  Microwave-induced synthesis and anti-microbial activities of 7,10,11,12-tetrahydrobenzo[c]acridin-8(9H)-one derivatives.

Authors:  Vetrivel Nadaraj; Senniappan Thamarai Selvi; Sellappan Mohan
Journal:  Eur J Med Chem       Date:  2008-07-12       Impact factor: 6.514

8.  1,3-Diphenyl-3,4-dihydro-benzo[b][1,6]naphthyridine.

Authors:  Werner Seebacher; Robert Weis; Robert Saf; Ferdinand Belaj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  1 in total

1.  7-(2-Chloro-phen-yl)-2,6,9-trimethyl-dibenzo[b,h][1,6]naphthyridine.

Authors:  K N Vennila; K Prabha; M Manoj; K J Rajendra Prasad; D Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28
  1 in total

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