Literature DB >> 21588630

Ergometrinine.

Stefan Merkel1, Robert Köppen, Matthias Koch, Franziska Emmerling, Irene Nehls.   

Abstract

The absolute configuration of ergometrinine, C(19)H(23)N(3)O(2) {systematic name: (6aR,9S)-N-[(S)-1-hy-droxy-propan-2-yl]-7-methyl-4,6,6a,7,8,9-hexa-hydro-indolo[4,3-fg]quinoline-9-carb-ox-amide}, was established based on epimerization reaction of ergometrine, which was followed by preparative HPLC. The non-aromatic ring (ring C of the ergoline skeleton) directly fused to the aromatic rings is nearly planar [maximum deviation = 0.271 (3) Å] and shows an envelope conformation, whereas ring D, involved in an intra-molecular N-H⋯N hydrogen bond, exibits a slightly distorted chair conformation. The structure displays undulating layers in the ac plane formed by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588630      PMCID: PMC3008012          DOI: 10.1107/S1600536810030825

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Ergometrinine is one of the main ergot alkaloids produced by the fungus Claviceps purpurea on cereal grains in the field, see: Crews et al. (2009 ▶); Müller et al. (2009 ▶). For investigations of the biologically inactive C8-(S)-isomer of ergometrinine, see: Pierri et al. (1982 ▶); Komarova & Tolkachev (2001 ▶). For the crystal structure of ergometrine maleate, see: Cejka et al. (1996 ▶).

Experimental

Crystal data

C19H23N3O2 M = 325.40 Orthorhombic, a = 7.4097 (5) Å b = 12.7313 (7) Å c = 18.2648 (9) Å V = 1723.01 (17) Å3 Z = 4 Cu Kα radiation μ = 0.66 mm−1 T = 298 K 0.20 × 0.05 × 0.02 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.879, T max = 0.986 4023 measured reflections 1889 independent reflections 1269 reflections with I > 2σ(I) R int = 0.056 3 standard reflections every 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.112 S = 1.00 1889 reflections 219 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030825/sj5027sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030825/sj5027Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H23N3O2F(000) = 696
Mr = 325.40Dx = 1.254 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 7.4097 (5) Åθ = 15–23°
b = 12.7313 (7) ŵ = 0.66 mm1
c = 18.2648 (9) ÅT = 298 K
V = 1723.01 (17) Å3Needle, yellow
Z = 40.20 × 0.05 × 0.02 mm
Enraf–Nonius CAD-4 diffractometer1269 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.056
graphiteθmax = 70.0°, θmin = 4.2°
ω/2θ scansh = −8→9
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −15→15
Tmin = 0.879, Tmax = 0.986l = −22→22
4023 measured reflections3 standard reflections every 60 min
1889 independent reflections intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0561P)2 + 0.0234P] where P = (Fo2 + 2Fc2)/3
1889 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2918 (3)−0.17372 (18)0.36716 (13)0.0586 (7)
O20.7137 (5)−0.32052 (18)0.48938 (13)0.0815 (10)
H2O0.7329−0.31910.54390.122*
N10.5819 (4)−0.1255 (2)0.35374 (16)0.0550 (8)
H1N0.6603−0.07930.32590.066*
N20.6383 (4)0.06231 (19)0.26795 (14)0.0519 (8)
N30.7306 (5)0.4652 (2)0.43312 (17)0.0666 (9)
H3N0.73020.53720.44760.080*
C10.4047 (6)−0.1103 (2)0.34594 (17)0.0464 (9)
C20.6592 (5)−0.2226 (3)0.38200 (17)0.0520 (9)
H20.5736−0.27930.37150.062*
C30.6825 (6)−0.2176 (2)0.46383 (19)0.0602 (11)
H2A0.7839−0.17270.47610.072*
H2B0.5749−0.18890.48640.072*
C40.8315 (6)−0.2470 (4)0.3419 (2)0.0890 (15)
H4A0.8070−0.25300.29040.133*
H4B0.8802−0.31210.35960.133*
H4C0.9170−0.19160.35000.133*
C50.3492 (5)−0.0110 (2)0.30590 (17)0.0493 (9)
H50.2276−0.02280.28650.059*
C60.4692 (6)0.0159 (3)0.24169 (19)0.0584 (11)
H6A0.4950−0.04710.21370.070*
H6B0.40770.06530.20980.070*
C70.6047 (5)0.1676 (2)0.29911 (16)0.0440 (8)
H70.56540.21290.25880.053*
C80.7810 (5)0.2148 (3)0.32985 (19)0.0527 (9)
H8A0.83890.16440.36200.063*
H8B0.86310.23030.28990.063*
C90.7408 (5)0.3130 (2)0.37121 (18)0.0491 (9)
C100.8341 (6)0.4010 (3)0.3898 (2)0.0622 (10)
H100.95160.41570.37520.075*
C110.5652 (6)0.4189 (3)0.44279 (19)0.0543 (10)
C120.5701 (5)0.3240 (2)0.40378 (16)0.0435 (8)
C130.4242 (5)0.2560 (2)0.40020 (16)0.0436 (8)
C140.4491 (5)0.1623 (2)0.35402 (16)0.0417 (8)
C150.3382 (5)0.0807 (2)0.35753 (18)0.0459 (8)
H150.24950.08020.39360.055*
C160.2697 (5)0.2850 (3)0.43839 (18)0.0545 (9)
H160.16810.24210.43730.065*
C170.2672 (7)0.3792 (3)0.4786 (2)0.0685 (12)
H170.16310.39620.50450.082*
C180.4104 (7)0.4473 (3)0.4817 (2)0.0656 (11)
H180.40470.50940.50830.079*
C190.7721 (7)0.0655 (3)0.2083 (2)0.0793 (14)
H19A0.7780−0.00200.18500.119*
H19B0.88840.08300.22790.119*
H19C0.73710.11750.17300.119*
U11U22U33U12U13U23
O10.0606 (17)0.0495 (13)0.0658 (15)−0.0125 (13)0.0060 (14)0.0047 (12)
O20.129 (3)0.0458 (13)0.0695 (17)0.0021 (17)−0.0340 (18)0.0006 (12)
N10.048 (2)0.0480 (16)0.0684 (19)−0.0048 (15)−0.0015 (17)0.0171 (14)
N20.067 (2)0.0411 (14)0.0477 (15)0.0007 (15)0.0157 (16)−0.0004 (12)
N30.090 (3)0.0410 (15)0.0693 (19)−0.0083 (18)−0.017 (2)−0.0049 (15)
C10.054 (3)0.0427 (17)0.0426 (17)−0.0070 (19)0.0016 (18)−0.0021 (14)
C20.054 (2)0.0444 (18)0.058 (2)−0.0008 (18)−0.0048 (19)0.0014 (16)
C30.071 (3)0.0408 (18)0.069 (2)−0.0040 (19)−0.017 (2)0.0001 (16)
C40.069 (3)0.094 (3)0.104 (4)0.013 (3)0.018 (3)0.011 (3)
C50.051 (2)0.0449 (17)0.0523 (19)−0.0076 (18)−0.0095 (18)0.0020 (15)
C60.084 (3)0.0473 (19)0.0442 (18)0.000 (2)−0.005 (2)−0.0034 (16)
C70.050 (2)0.0414 (15)0.0408 (16)0.0026 (17)0.0039 (17)0.0042 (14)
C80.046 (2)0.0538 (19)0.058 (2)−0.0014 (18)0.0112 (18)0.0019 (16)
C90.051 (2)0.0431 (18)0.0531 (19)−0.0019 (17)−0.0028 (19)0.0044 (15)
C100.059 (3)0.054 (2)0.074 (2)−0.007 (2)−0.008 (2)0.0077 (19)
C110.072 (3)0.0394 (17)0.0520 (19)0.0029 (19)−0.010 (2)0.0001 (16)
C120.052 (2)0.0381 (16)0.0408 (17)0.0039 (18)−0.0029 (17)0.0020 (14)
C130.049 (2)0.0412 (16)0.0409 (16)0.0084 (18)0.0016 (17)0.0048 (13)
C140.048 (2)0.0368 (15)0.0406 (16)0.0042 (16)−0.0001 (16)0.0035 (13)
C150.046 (2)0.0443 (16)0.0476 (17)0.0042 (17)0.0016 (17)0.0024 (14)
C160.058 (3)0.0512 (18)0.0541 (19)0.0053 (19)0.010 (2)0.0019 (17)
C170.087 (3)0.060 (2)0.059 (2)0.021 (3)0.018 (2)−0.0003 (19)
C180.098 (3)0.0418 (18)0.057 (2)0.018 (2)0.004 (2)−0.0066 (16)
C190.104 (4)0.061 (2)0.073 (2)0.004 (3)0.042 (3)−0.0040 (19)
O1—C11.226 (4)C6—H6B0.9700
O2—C31.410 (4)C7—C141.530 (4)
O2—H2O1.0068C7—C81.544 (5)
N1—C11.334 (5)C7—H70.9800
N1—C21.457 (4)C8—C91.490 (5)
N1—H1N0.9707C8—H8A0.9700
N2—C61.466 (5)C8—H8B0.9700
N2—C191.474 (5)C9—C101.360 (5)
N2—C71.477 (4)C9—C121.405 (5)
N3—C111.371 (5)C10—H100.9300
N3—C101.372 (5)C11—C181.397 (6)
N3—H3N0.9537C11—C121.403 (4)
C1—C51.517 (4)C12—C131.386 (5)
C2—C41.505 (5)C13—C161.391 (5)
C2—C31.506 (5)C13—C141.473 (4)
C2—H20.9800C14—C151.325 (4)
C3—H2A0.9700C15—H150.9300
C3—H2B0.9700C16—C171.407 (5)
C4—H4A0.9600C16—H160.9300
C4—H4B0.9600C17—C181.371 (6)
C4—H4C0.9600C17—H170.9300
C5—C151.503 (4)C18—H180.9300
C5—C61.511 (5)C19—H19A0.9600
C5—H50.9800C19—H19B0.9600
C6—H6A0.9700C19—H19C0.9600
C3—O2—H2O109.5N2—C7—H7107.2
C1—N1—C2123.2 (3)C14—C7—H7107.2
C1—N1—H1N116.4C8—C7—H7107.2
C2—N1—H1N117.7C9—C8—C7110.0 (3)
C6—N2—C19110.1 (3)C9—C8—H8A109.7
C6—N2—C7110.3 (3)C7—C8—H8A109.7
C19—N2—C7111.9 (3)C9—C8—H8B109.7
C11—N3—C10108.5 (3)C7—C8—H8B109.7
C11—N3—H3N112.1H8A—C8—H8B108.2
C10—N3—H3N137.2C10—C9—C12105.6 (3)
O1—C1—N1122.8 (3)C10—C9—C8135.7 (4)
O1—C1—C5121.1 (3)C12—C9—C8118.6 (3)
N1—C1—C5116.1 (3)C9—C10—N3110.5 (4)
N1—C2—C4109.6 (3)C9—C10—H10124.7
N1—C2—C3111.1 (3)N3—C10—H10124.7
C4—C2—C3113.3 (4)N3—C11—C18133.5 (3)
N1—C2—H2107.5N3—C11—C12106.4 (3)
C4—C2—H2107.5C18—C11—C12120.1 (4)
C3—C2—H2107.5C13—C12—C11122.8 (3)
O2—C3—C2107.9 (3)C13—C12—C9128.3 (3)
O2—C3—H2A110.1C11—C12—C9108.9 (3)
C2—C3—H2A110.1C12—C13—C16116.9 (3)
O2—C3—H2B110.1C12—C13—C14115.8 (3)
C2—C3—H2B110.1C16—C13—C14127.2 (3)
H2A—C3—H2B108.4C15—C14—C13122.0 (3)
C2—C4—H4A109.5C15—C14—C7122.3 (3)
C2—C4—H4B109.5C13—C14—C7115.7 (3)
H4A—C4—H4B109.5C14—C15—C5123.0 (3)
C2—C4—H4C109.5C14—C15—H15118.5
H4A—C4—H4C109.5C5—C15—H15118.5
H4B—C4—H4C109.5C13—C16—C17119.9 (4)
C15—C5—C6110.0 (3)C13—C16—H16120.0
C15—C5—C1111.1 (2)C17—C16—H16120.0
C6—C5—C1113.8 (3)C18—C17—C16123.4 (4)
C15—C5—H5107.2C18—C17—H17118.3
C6—C5—H5107.2C16—C17—H17118.3
C1—C5—H5107.2C17—C18—C11116.8 (3)
N2—C6—C5109.9 (3)C17—C18—H18121.6
N2—C6—H6A109.7C11—C18—H18121.6
C5—C6—H6A109.7N2—C19—H19A109.5
N2—C6—H6B109.7N2—C19—H19B109.5
C5—C6—H6B109.7H19A—C19—H19B109.5
H6A—C6—H6B108.2N2—C19—H19C109.5
N2—C7—C14109.8 (2)H19A—C19—H19C109.5
N2—C7—C8110.5 (3)H19B—C19—H19C109.5
C14—C7—C8114.6 (2)
C2—N1—C1—O15.7 (5)N3—C11—C12—C90.7 (4)
C2—N1—C1—C5−171.7 (3)C18—C11—C12—C9−178.6 (3)
C1—N1—C2—C4142.9 (4)C10—C9—C12—C13178.9 (3)
C1—N1—C2—C3−91.1 (4)C8—C9—C12—C13−3.3 (5)
N1—C2—C3—O2165.5 (3)C10—C9—C12—C11−1.0 (4)
C4—C2—C3—O2−70.6 (4)C8—C9—C12—C11176.9 (3)
O1—C1—C5—C1596.5 (4)C11—C12—C13—C16−0.9 (5)
N1—C1—C5—C15−86.0 (4)C9—C12—C13—C16179.3 (3)
O1—C1—C5—C6−138.6 (3)C11—C12—C13—C14177.2 (3)
N1—C1—C5—C638.8 (4)C9—C12—C13—C14−2.6 (5)
C19—N2—C6—C5166.6 (3)C12—C13—C14—C15165.5 (3)
C7—N2—C6—C5−69.4 (3)C16—C13—C14—C15−16.6 (5)
C15—C5—C6—N248.3 (4)C12—C13—C14—C7−17.5 (4)
C1—C5—C6—N2−77.1 (3)C16—C13—C14—C7160.3 (3)
C6—N2—C7—C1450.1 (3)N2—C7—C14—C15−14.9 (4)
C19—N2—C7—C14173.1 (3)C8—C7—C14—C15−140.1 (3)
C6—N2—C7—C8177.6 (3)N2—C7—C14—C13168.2 (3)
C19—N2—C7—C8−59.4 (4)C8—C7—C14—C1343.0 (4)
N2—C7—C8—C9−171.3 (2)C13—C14—C15—C5173.7 (3)
C14—C7—C8—C9−46.5 (4)C7—C14—C15—C5−3.1 (5)
C7—C8—C9—C10−155.5 (4)C6—C5—C15—C14−13.5 (5)
C7—C8—C9—C1227.4 (4)C1—C5—C15—C14113.5 (4)
C12—C9—C10—N30.9 (4)C12—C13—C16—C17−0.5 (5)
C8—C9—C10—N3−176.4 (4)C14—C13—C16—C17−178.3 (3)
C11—N3—C10—C9−0.5 (4)C13—C16—C17—C181.2 (5)
C10—N3—C11—C18179.1 (4)C16—C17—C18—C11−0.6 (6)
C10—N3—C11—C12−0.2 (4)N3—C11—C18—C17−179.9 (4)
N3—C11—C12—C13−179.1 (3)C12—C11—C18—C17−0.7 (5)
C18—C11—C12—C131.5 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N20.972.102.890 (4)138.
O2—H2O···O1i1.011.682.684 (3)172.
N3—H3N···O2ii0.951.972.918 (4)173.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N20.972.102.890 (4)138
O2—H2O⋯O1i1.011.682.684 (3)172
N3—H3N⋯O2ii0.951.972.918 (4)173

Symmetry codes: (i) ; (ii) .

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