Literature DB >> 22347120

Lysergol monohydrate.

Stefan Merkel1, Robert Köppen, Matthias Koch, Franziska Emmerling, Irene Nehls.   

Abstract

IN THE TITLE COMPOUND [SYSTEMATIC NAME: (7-methyl-4,6,6a,7,8,9-hexa-hydro-indolo[4,3,2-fg]quinoline-9-yl)methanol monohydrate], C(16)H(18)N(2)O·H(2)O, the non-aromatic ring (ring C of the ergoline skeleton) directly fused to the aromatic rings is nearly planar, with a maximum deviation of 0.659 (3) Å, and shows an envelope conformation. In the crystal, hydrogen bonds between the lysergol and water mol-ecules contribute to the formation of layers parallel to (10[Formula: see text]).

Entities:  

Year:  2012        PMID: 22347120      PMCID: PMC3275264          DOI: 10.1107/S1600536812002632

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the natural occurrence of lysergol, see: Amor-Prats & Harborne (1993 ▶); Uhlig et al. (2007 ▶). For the crystal structures of other alkaloids produced by Clavicipitaceae see: Pakhomova et al. (1995 ▶); Merkel et al. (2010 ▶).

Experimental

Crystal data

C16H18N2O·H2O M = 272.34 Orthorhombic, a = 7.6234 (12) Å b = 12.3803 (19) Å c = 15.877 (2) Å V = 1498.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.2 × 0.1 × 0.08 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.85, T max = 0.96 12705 measured reflections 1569 independent reflections 747 reflections with I > 2σ(I) R int = 0.122

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.052 S = 0.79 1569 reflections 188 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.10 e Å−3 Δρmin = −0.10 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002632/fj2506sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002632/fj2506Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812002632/fj2506Isup4.mol Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18N2O·H2OF(000) = 584
Mr = 272.34Dx = 1.207 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 46 reflections
a = 7.6234 (12) Åθ = 4–22°
b = 12.3803 (19) ŵ = 0.08 mm1
c = 15.877 (2) ÅT = 296 K
V = 1498.5 (4) Å3Needle, colourless
Z = 40.2 × 0.1 × 0.08 mm
Bruker APEX CCD area-detector diffractometer1569 independent reflections
Radiation source: fine-focus sealed tube747 reflections with I > 2σ(I)
graphiteRint = 0.122
ω/2θ scansθmax = 25.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→8
Tmin = 0.85, Tmax = 0.96k = −13→14
12705 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.052H atoms treated by a mixture of independent and constrained refinement
S = 0.79w = 1/[σ2(Fo2) + (0.0045P)2] where P = (Fo2 + 2Fc2)/3
1569 reflections(Δ/σ)max < 0.001
188 parametersΔρmax = 0.10 e Å3
2 restraintsΔρmin = −0.10 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3895 (3)1.17847 (16)0.55746 (12)0.0635 (7)
H10.44651.23440.55380.095*
N10.9193 (3)0.95002 (18)0.53144 (15)0.0442 (7)
N20.8345 (5)0.6912 (2)0.21044 (17)0.0648 (9)
H2A0.83990.64520.16990.078*
C10.4962 (4)1.0956 (2)0.5939 (2)0.0562 (9)
H1A0.42661.03050.60000.067*
H1B0.53261.11820.64970.067*
C20.6602 (4)1.0695 (2)0.5413 (2)0.0477 (8)
H110.72701.13620.53260.057*
C30.7769 (4)0.9876 (2)0.5872 (2)0.0521 (10)
H3A0.82691.02100.63710.062*
H3B0.70670.92640.60510.062*
C40.8463 (4)0.8815 (2)0.46293 (19)0.0442 (8)
H40.80200.81510.48890.053*
C50.9912 (4)0.8488 (2)0.3992 (2)0.0571 (10)
H5A1.05180.91290.37950.068*
H5B1.07620.80250.42680.068*
C60.9116 (5)0.7897 (3)0.3247 (2)0.0488 (9)
C70.9690 (5)0.7142 (3)0.2684 (2)0.0627 (11)
H71.07990.68280.26840.075*
C80.6916 (6)0.7556 (3)0.2301 (2)0.0541 (10)
C90.7374 (4)0.8162 (3)0.30186 (19)0.0458 (9)
C100.6234 (5)0.8872 (3)0.34156 (19)0.0457 (9)
C110.6897 (4)0.9386 (3)0.42089 (19)0.0435 (9)
C120.6124 (4)1.0234 (2)0.4570 (2)0.0514 (9)
H120.52161.05660.42760.062*
C130.4597 (4)0.9014 (3)0.30490 (19)0.0596 (10)
H130.38070.95000.32840.072*
C140.4120 (5)0.8423 (3)0.2318 (2)0.0637 (10)
H140.30140.85300.20850.076*
C150.5253 (6)0.7691 (3)0.1937 (2)0.0678 (12)
H150.49220.73050.14600.081*
C161.0496 (4)0.8895 (2)0.58200 (19)0.0682 (11)
H16A0.99840.82310.60130.102*
H16B1.08440.93220.62960.102*
H16C1.15040.87390.54790.102*
O20.4063 (3)0.86910 (19)0.96241 (15)0.0648 (7)
H170.468 (4)0.918 (2)0.9836 (19)0.097*
H180.327 (3)0.847 (3)0.9945 (17)0.097*
U11U22U33U12U13U23
O10.0514 (16)0.0583 (16)0.0807 (18)0.0025 (14)−0.0038 (13)−0.0068 (13)
N10.0467 (19)0.0461 (17)0.0398 (17)0.0035 (15)−0.0078 (16)0.0001 (15)
N20.090 (3)0.050 (2)0.055 (2)0.003 (2)0.005 (2)−0.0091 (16)
C10.055 (3)0.055 (2)0.058 (2)0.004 (2)0.005 (2)−0.0022 (19)
C20.053 (2)0.044 (2)0.046 (2)0.0011 (18)0.0011 (19)0.0009 (19)
C30.065 (3)0.047 (2)0.044 (2)−0.003 (2)−0.001 (2)−0.0040 (18)
C40.047 (2)0.041 (2)0.045 (2)−0.0003 (17)−0.0002 (19)0.0014 (19)
C50.054 (3)0.059 (2)0.058 (2)0.0101 (19)−0.001 (2)−0.0029 (19)
C60.059 (3)0.048 (2)0.040 (2)0.005 (2)0.004 (2)−0.0014 (18)
C70.070 (3)0.063 (3)0.055 (2)0.009 (2)−0.001 (2)0.001 (2)
C80.065 (3)0.054 (3)0.043 (2)−0.006 (2)0.001 (2)−0.001 (2)
C90.048 (3)0.055 (3)0.034 (2)−0.006 (2)−0.005 (2)0.0015 (19)
C100.047 (3)0.053 (2)0.038 (2)−0.006 (2)−0.0012 (19)0.0022 (18)
C110.044 (2)0.044 (2)0.043 (2)0.0015 (18)0.0029 (18)0.0008 (18)
C120.053 (2)0.052 (2)0.049 (2)0.0046 (19)−0.001 (2)0.0075 (18)
C130.056 (3)0.069 (3)0.053 (3)0.000 (2)−0.007 (2)−0.005 (2)
C140.055 (3)0.075 (3)0.061 (3)−0.008 (3)−0.013 (2)−0.002 (2)
C150.087 (4)0.067 (3)0.049 (3)−0.016 (3)−0.001 (3)−0.003 (2)
C160.074 (3)0.066 (3)0.065 (2)0.012 (2)−0.025 (2)0.002 (2)
O20.071 (2)0.0660 (18)0.0570 (16)−0.0169 (14)0.0090 (14)−0.0127 (14)
O1—C11.432 (3)C5—H5B0.9700
O1—H10.8200C6—C71.365 (4)
N1—C31.476 (3)C6—C91.415 (4)
N1—C161.481 (3)C7—H70.9300
N1—C41.487 (3)C8—C151.403 (4)
N2—C81.385 (4)C8—C91.408 (4)
N2—C71.407 (4)C9—C101.388 (4)
N2—H2A0.8600C10—C131.388 (4)
C1—C21.538 (3)C10—C111.499 (4)
C1—H1A0.9700C11—C121.333 (3)
C1—H1B0.9700C12—H120.9300
C2—C121.500 (4)C13—C141.420 (4)
C2—C31.534 (4)C13—H130.9300
C2—H110.9800C14—C151.390 (4)
C3—H3A0.9700C14—H140.9300
C3—H3B0.9700C15—H150.9300
C4—C111.540 (4)C16—H16A0.9600
C4—C51.552 (4)C16—H16B0.9600
C4—H40.9800C16—H16C0.9600
C5—C61.517 (4)O2—H170.838 (10)
C5—H5A0.9700O2—H180.837 (10)
C1—O1—H1109.5C7—C6—C9107.0 (3)
C3—N1—C16109.1 (2)C7—C6—C5135.4 (4)
C3—N1—C4110.1 (2)C9—C6—C5117.6 (3)
C16—N1—C4111.0 (2)C6—C7—N2109.4 (3)
C8—N2—C7108.0 (3)C6—C7—H7125.3
C8—N2—H2A126.0N2—C7—H7125.3
C7—N2—H2A126.0N2—C8—C15133.3 (4)
O1—C1—C2113.1 (3)N2—C8—C9107.1 (3)
O1—C1—H1A109.0C15—C8—C9119.6 (4)
C2—C1—H1A109.0C10—C9—C8123.3 (4)
O1—C1—H1B109.0C10—C9—C6128.2 (3)
C2—C1—H1B109.0C8—C9—C6108.4 (3)
H1A—C1—H1B107.8C9—C10—C13116.9 (3)
C12—C2—C3108.3 (2)C9—C10—C11116.1 (3)
C12—C2—C1111.5 (3)C13—C10—C11127.0 (3)
C3—C2—C1110.6 (3)C12—C11—C10123.1 (3)
C12—C2—H11108.8C12—C11—C4121.2 (3)
C3—C2—H11108.8C10—C11—C4115.5 (3)
C1—C2—H11108.8C11—C12—C2125.1 (3)
N1—C3—C2110.4 (3)C11—C12—H12117.4
N1—C3—H3A109.6C2—C12—H12117.4
C2—C3—H3A109.6C10—C13—C14120.5 (3)
N1—C3—H3B109.6C10—C13—H13119.7
C2—C3—H3B109.6C14—C13—H13119.7
H3A—C3—H3B108.1C15—C14—C13122.2 (4)
N1—C4—C11110.2 (2)C15—C14—H14118.9
N1—C4—C5111.1 (2)C13—C14—H14118.9
C11—C4—C5112.9 (3)C14—C15—C8117.4 (4)
N1—C4—H4107.5C14—C15—H15121.3
C11—C4—H4107.5C8—C15—H15121.3
C5—C4—H4107.5N1—C16—H16A109.5
C6—C5—C4110.5 (3)N1—C16—H16B109.5
C6—C5—H5A109.6H16A—C16—H16B109.5
C4—C5—H5A109.6N1—C16—H16C109.5
C6—C5—H5B109.6H16A—C16—H16C109.5
C4—C5—H5B109.6H16B—C16—H16C109.5
H5A—C5—H5B108.1H17—O2—H18114 (3)
O1—C1—C2—C12−64.4 (3)C7—C6—C9—C8−0.4 (4)
O1—C1—C2—C3175.0 (2)C5—C6—C9—C8177.9 (3)
C16—N1—C3—C2168.4 (2)C8—C9—C10—C13−3.2 (5)
C4—N1—C3—C2−69.5 (3)C6—C9—C10—C13178.2 (3)
C12—C2—C3—N148.7 (3)C8—C9—C10—C11175.5 (3)
C1—C2—C3—N1171.3 (2)C6—C9—C10—C11−3.1 (5)
C3—N1—C4—C1149.4 (3)C9—C10—C11—C12166.3 (3)
C16—N1—C4—C11170.4 (2)C13—C10—C11—C12−15.2 (5)
C3—N1—C4—C5175.3 (2)C9—C10—C11—C4−18.4 (4)
C16—N1—C4—C5−63.8 (3)C13—C10—C11—C4160.1 (3)
N1—C4—C5—C6−173.7 (2)N1—C4—C11—C12−14.6 (4)
C11—C4—C5—C6−49.3 (3)C5—C4—C11—C12−139.5 (3)
C4—C5—C6—C7−152.8 (4)N1—C4—C11—C10170.0 (2)
C4—C5—C6—C929.4 (4)C5—C4—C11—C1045.1 (4)
C9—C6—C7—N2−0.5 (4)C10—C11—C12—C2172.3 (3)
C5—C6—C7—N2−178.5 (3)C4—C11—C12—C2−2.7 (5)
C8—N2—C7—C61.3 (4)C3—C2—C12—C11−14.0 (4)
C7—N2—C8—C15178.3 (4)C1—C2—C12—C11−136.0 (3)
C7—N2—C8—C9−1.5 (4)C9—C10—C13—C142.0 (5)
N2—C8—C9—C10−177.6 (3)C11—C10—C13—C14−176.5 (3)
C15—C8—C9—C102.5 (5)C10—C13—C14—C15−0.3 (5)
N2—C8—C9—C61.2 (4)C13—C14—C15—C8−0.4 (5)
C15—C8—C9—C6−178.6 (3)N2—C8—C15—C14179.6 (3)
C7—C6—C9—C10178.4 (3)C9—C8—C15—C14−0.6 (5)
C5—C6—C9—C10−3.3 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.822.032.845 (3)176
N2—H2A···O2ii0.862.172.896 (4)142
O2—H17···N1iii0.84 (3)2.00 (3)2.826 (3)171 (3)
O2—H18···O1iv0.84 (3)1.96 (2)2.777 (3)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.822.032.845 (3)176
N2—H2A⋯O2ii0.862.172.896 (4)142
O2—H17⋯N1iii0.84 (3)2.00 (3)2.826 (3)171 (3)
O2—H18⋯O1iv0.84 (3)1.96 (2)2.777 (3)167 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Silvio Uhlig; Turid Vikøren; Lada Ivanova; Kjell Handeland
Journal:  Rapid Commun Mass Spectrom       Date:  2007       Impact factor: 2.419

3.  Ergometrinine.

Authors:  Stefan Merkel; Robert Köppen; Matthias Koch; Franziska Emmerling; Irene Nehls
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
  3 in total

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