Literature DB >> 21588605

Nicotinaldehyde [2,8-bis-(trifluoro-meth-yl)quinolin-4-yl]hydrazone monohydrate.

H C Devarajegowda, Suresh Babu Vepuri, M Vinduvahini, H D Kavitha, H K Arunkashi.   

Abstract

In the title compound, C(17)H(10)F(6)N(4)·H(2)O, the pyridine ring is not coplanar with the quinoline ring system; the dihedral angle between the two planes is 21.3 (1)°. One of the trifluoro-methyl group is disordered over two orientations with occupancies of 0.70 (1) and 0.30 (1). The water mol-ecule is disordered over two positions with occupancies of 0.76 (1) and 0.24 (1). In the crystal, the water mol-ecule is linked to the main mol-ecule via N-H⋯O and C-H⋯O hydrogen bonds, and inversion-related pairs are linked via O-H⋯N hydrogen bonds. In addition, a weak π-π inter-action is observed between the pyridine ring and the pyridine ring of the quinoline unit, with a centroid-centroid distance of 3.650 (2) Å.

Entities:  

Year:  2010        PMID: 21588605      PMCID: PMC3007871          DOI: 10.1107/S1600536810030862

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to quinolines, see: Mao et al. (2009 ▶); Bermudez et al. (2004 ▶); Jayaprakash et al. (2006 ▶); Andries et al. (2005 ▶). For related structures, see: Al-eryani et al. (2010 ▶); Skörska et al. (2005 ▶).

Experimental

Crystal data

C17H10F6N4·H2O M = 402.31 Monoclinic, a = 21.103 (4) Å b = 15.120 (3) Å c = 12.537 (3) Å β = 118.633 (3)° V = 3511.1 (13) Å3 Z = 8 Mo Kα radiation μ = 0.14 mm−1 T = 295 K 0.22 × 0.15 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: ψ scan (SADABS; Bruker, 2001 ▶) T min = 0.975, T max = 0.983 13267 measured reflections 3416 independent reflections 2309 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.169 S = 1.04 3416 reflections 301 parameters 54 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030862/ci5125sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030862/ci5125Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H10F6N4·H2OF(000) = 1632
Mr = 402.31Dx = 1.522 Mg m3
Monoclinic, C2/cMelting point: 486 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 21.103 (4) ÅCell parameters from 3416 reflections
b = 15.120 (3) Åθ = 1.7–26.0°
c = 12.537 (3) ŵ = 0.14 mm1
β = 118.633 (3)°T = 295 K
V = 3511.1 (13) Å3Plate, colourless
Z = 80.22 × 0.15 × 0.12 mm
Bruker SMART CCD area-detector diffractometer3416 independent reflections
Radiation source: fine-focus sealed tube2309 reflections with I > 2σ(I)
graphiteRint = 0.035
ω and φ scansθmax = 26.0°, θmin = 1.7°
Absorption correction: ψ scan (SADABS; Bruker, 2001)h = −26→24
Tmin = 0.975, Tmax = 0.983k = −18→18
13267 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0764P)2 + 2.423P] where P = (Fo2 + 2Fc2)/3
3416 reflections(Δ/σ)max = 0.001
301 parametersΔρmax = 0.26 e Å3
54 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F1A0.5904 (2)−0.0211 (2)0.5513 (4)0.0998 (17)0.702 (8)
F2A0.6589 (4)−0.0445 (5)0.4831 (7)0.136 (3)0.702 (8)
F3A0.5538 (5)−0.0032 (4)0.3634 (5)0.175 (4)0.702 (8)
F1B0.6012 (6)−0.0127 (6)0.3579 (8)0.091 (3)0.298 (8)
F2B0.5395 (6)0.0067 (8)0.4374 (17)0.130 (5)0.298 (8)
F3B0.6570 (7)−0.0477 (7)0.5238 (10)0.110 (6)0.298 (8)
F40.80847 (12)0.08843 (14)0.83893 (19)0.0933 (7)
F50.71855 (14)0.12394 (18)0.8610 (2)0.1087 (8)
F60.81994 (15)0.18889 (16)0.96395 (17)0.1198 (10)
N10.68113 (12)0.11985 (15)0.6073 (2)0.0554 (6)
N20.61107 (14)0.31173 (19)0.3332 (2)0.0623 (7)
N30.56960 (13)0.28345 (17)0.2162 (2)0.0607 (7)
N40.42311 (17)0.3601 (2)−0.1996 (3)0.0905 (10)
C10.63497 (15)0.10370 (18)0.4929 (2)0.0558 (7)
C20.60955 (15)0.16393 (18)0.3984 (2)0.0550 (7)
H20.57660.14680.31980.066*
C30.63410 (14)0.24976 (18)0.4233 (2)0.0509 (7)
C40.68355 (14)0.27268 (18)0.5461 (2)0.0505 (7)
C50.70505 (14)0.20455 (17)0.6345 (2)0.0499 (7)
C60.75344 (16)0.22617 (19)0.7576 (2)0.0581 (8)
C70.77952 (18)0.3094 (2)0.7890 (3)0.0692 (9)
H70.81180.32220.86980.083*
C80.75865 (18)0.3761 (2)0.7019 (3)0.0729 (9)
H80.77690.43300.72480.087*
C90.71174 (17)0.35831 (19)0.5837 (3)0.0641 (8)
H90.69800.40350.52650.077*
C100.6071 (2)0.0102 (2)0.4681 (3)0.0809 (11)
C110.7746 (2)0.1574 (2)0.8540 (3)0.0750 (10)
C120.54235 (17)0.3419 (2)0.1340 (3)0.0699 (9)
H120.54890.40150.15460.084*
C130.50072 (17)0.3156 (2)0.0070 (3)0.0639 (8)
C140.49612 (17)0.2291 (2)−0.0322 (3)0.0662 (9)
H140.52090.18430.02320.079*
C150.45503 (19)0.2098 (2)−0.1525 (3)0.0755 (10)
H150.45080.1519−0.17980.091*
C160.4200 (2)0.2770 (3)−0.2323 (3)0.0813 (11)
H160.39260.2631−0.31420.098*
C170.4624 (2)0.3780 (2)−0.0816 (3)0.0893 (12)
H170.46420.4364−0.05700.107*
O1W0.6581 (3)0.4946 (2)0.3473 (4)0.088 (2)0.758 (13)
H1W0.631 (3)0.537 (3)0.315 (6)0.132*0.758 (13)
H2W0.695 (2)0.498 (4)0.341 (7)0.132*0.758 (13)
O2W0.6032 (15)0.5042 (8)0.3654 (12)0.119 (10)0.242 (13)
H2N0.6237 (16)0.368 (2)0.345 (3)0.065 (9)*
U11U22U33U12U13U23
F1A0.121 (3)0.070 (2)0.112 (3)−0.0409 (19)0.059 (3)−0.0055 (18)
F2A0.200 (6)0.079 (4)0.169 (7)0.015 (3)0.120 (5)−0.009 (4)
F3A0.186 (6)0.087 (3)0.093 (3)−0.068 (4)−0.062 (3)0.022 (3)
F1B0.098 (6)0.065 (4)0.089 (6)−0.019 (5)0.027 (5)−0.040 (4)
F2B0.117 (8)0.105 (7)0.198 (12)−0.053 (5)0.099 (8)−0.042 (7)
F3B0.150 (9)0.039 (4)0.060 (5)−0.002 (5)−0.014 (5)0.019 (4)
F40.0962 (15)0.0700 (13)0.0804 (14)0.0121 (11)0.0155 (12)0.0131 (10)
F50.1159 (19)0.126 (2)0.0824 (15)−0.0115 (15)0.0462 (14)0.0322 (13)
F60.156 (2)0.0963 (16)0.0446 (11)−0.0156 (14)−0.0024 (12)0.0008 (10)
N10.0587 (14)0.0482 (13)0.0457 (13)−0.0017 (11)0.0141 (11)0.0017 (10)
N20.0664 (17)0.0551 (16)0.0467 (13)−0.0082 (12)0.0122 (12)0.0045 (11)
N30.0571 (15)0.0648 (15)0.0470 (13)−0.0053 (12)0.0144 (12)0.0066 (11)
N40.098 (2)0.087 (2)0.0532 (16)−0.0108 (17)0.0094 (16)0.0226 (16)
C10.0562 (17)0.0488 (16)0.0488 (15)0.0003 (13)0.0142 (13)−0.0010 (12)
C20.0518 (16)0.0546 (17)0.0428 (14)−0.0016 (13)0.0099 (12)−0.0031 (12)
C30.0465 (15)0.0529 (16)0.0458 (15)0.0019 (12)0.0162 (12)0.0028 (12)
C40.0456 (15)0.0509 (16)0.0490 (15)−0.0003 (12)0.0178 (13)−0.0010 (12)
C50.0463 (15)0.0503 (16)0.0455 (14)0.0014 (12)0.0158 (12)0.0003 (12)
C60.0588 (18)0.0577 (17)0.0464 (15)−0.0016 (14)0.0160 (13)−0.0028 (13)
C70.071 (2)0.065 (2)0.0496 (16)−0.0067 (16)0.0111 (15)−0.0099 (15)
C80.076 (2)0.0534 (18)0.064 (2)−0.0126 (16)0.0141 (17)−0.0098 (15)
C90.0663 (19)0.0486 (17)0.0614 (18)−0.0040 (14)0.0177 (15)0.0032 (13)
C100.093 (3)0.053 (2)0.063 (2)0.0027 (19)0.010 (2)−0.0039 (17)
C110.086 (3)0.068 (2)0.0471 (18)−0.0073 (19)0.0134 (17)0.0009 (15)
C120.071 (2)0.0597 (19)0.0548 (18)−0.0084 (15)0.0108 (16)0.0102 (14)
C130.0595 (18)0.066 (2)0.0538 (17)−0.0075 (14)0.0174 (15)0.0150 (14)
C140.065 (2)0.069 (2)0.0581 (18)0.0049 (16)0.0240 (16)0.0125 (15)
C150.082 (2)0.080 (2)0.059 (2)0.0000 (19)0.0292 (18)−0.0011 (17)
C160.080 (2)0.100 (3)0.0503 (18)−0.007 (2)0.0203 (17)0.0073 (19)
C170.098 (3)0.070 (2)0.062 (2)−0.014 (2)0.0081 (19)0.0199 (17)
O1W0.102 (4)0.064 (2)0.081 (2)−0.010 (2)0.029 (2)0.0169 (17)
O2W0.18 (2)0.062 (7)0.093 (9)0.001 (8)0.047 (10)0.014 (6)
F1A—C101.337 (5)C4—C91.408 (4)
F2A—C101.312 (6)C4—C51.419 (4)
F3A—C101.269 (5)C5—C61.422 (4)
F1B—C101.370 (7)C6—C71.354 (4)
F2B—C101.288 (8)C6—C111.491 (4)
F3B—C101.288 (8)C7—C81.394 (5)
F4—C111.328 (4)C7—H70.93
F5—C111.328 (4)C8—C91.357 (4)
F6—C111.334 (4)C8—H80.93
N1—C11.314 (3)C9—H90.93
N1—C51.359 (3)C12—C131.457 (4)
N2—C31.365 (4)C12—H120.93
N2—N31.367 (3)C13—C141.384 (5)
N2—H2N0.88 (3)C13—C171.385 (4)
N3—C121.268 (4)C14—C151.363 (4)
N4—C161.314 (5)C14—H140.93
N4—C171.332 (4)C15—C161.368 (5)
C1—C21.383 (4)C15—H150.93
C1—C101.505 (4)C16—H160.93
C2—C31.377 (4)C17—H170.93
C2—H20.93O1W—H1W0.83 (2)
C3—C41.429 (4)O1W—H2W0.81 (2)
C1—N1—C5116.2 (2)F2B—C10—F1A63.3 (8)
C3—N2—N3117.6 (3)F3B—C10—F1A77.7 (8)
C3—N2—H2N124 (2)F2A—C10—F1A100.2 (4)
N3—N2—H2N118 (2)F3A—C10—F1B46.4 (5)
C12—N3—N2117.5 (3)F2B—C10—F1B97.8 (8)
C16—N4—C17116.9 (3)F3B—C10—F1B91.8 (8)
N1—C1—C2126.4 (3)F2A—C10—F1B69.6 (6)
N1—C1—C10114.4 (2)F1A—C10—F1B140.0 (5)
C2—C1—C10119.2 (3)F3A—C10—C1115.4 (3)
C3—C2—C1118.5 (2)F2B—C10—C1111.6 (6)
C3—C2—H2120.7F3B—C10—C1112.9 (7)
C1—C2—H2120.7F2A—C10—C1110.3 (5)
N2—C3—C2120.9 (3)F1A—C10—C1113.2 (3)
N2—C3—C4120.8 (3)F1B—C10—C1106.5 (5)
C2—C3—C4118.3 (2)F4—C11—F5105.5 (3)
C9—C4—C5118.7 (2)F4—C11—F6105.0 (3)
C9—C4—C3123.8 (3)F5—C11—F6106.7 (3)
C5—C4—C3117.5 (2)F4—C11—C6113.9 (3)
N1—C5—C4123.2 (2)F5—C11—C6112.9 (3)
N1—C5—C6118.5 (2)F6—C11—C6112.1 (3)
C4—C5—C6118.4 (3)N3—C12—C13120.0 (3)
C7—C6—C5120.7 (3)N3—C12—H12120.0
C7—C6—C11119.3 (3)C13—C12—H12120.0
C5—C6—C11120.0 (3)C14—C13—C17116.4 (3)
C6—C7—C8120.8 (3)C14—C13—C12123.3 (3)
C6—C7—H7119.6C17—C13—C12120.3 (3)
C8—C7—H7119.6C15—C14—C13119.6 (3)
C9—C8—C7120.2 (3)C15—C14—H14120.2
C9—C8—H8119.9C13—C14—H14120.2
C7—C8—H8119.9C14—C15—C16119.1 (4)
C8—C9—C4121.2 (3)C14—C15—H15120.5
C8—C9—H9119.4C16—C15—H15120.5
C4—C9—H9119.4N4—C16—C15123.6 (3)
F3A—C10—F2B51.7 (6)N4—C16—H16118.2
F3A—C10—F3B122.8 (7)C15—C16—H16118.2
F2B—C10—F3B129.4 (10)N4—C17—C13124.5 (4)
F3A—C10—F2A108.2 (6)N4—C17—H17117.8
F2B—C10—F2A138.2 (7)C13—C17—H17117.8
F3B—C10—F2A23.7 (8)H1W—O1W—H2W112 (4)
F3A—C10—F1A108.5 (6)
C3—N2—N3—C12173.2 (3)N1—C1—C10—F3A168.6 (8)
C5—N1—C1—C21.0 (5)C2—C1—C10—F3A−9.6 (9)
C5—N1—C1—C10−177.1 (3)N1—C1—C10—F2B112.0 (9)
N1—C1—C2—C30.3 (5)C2—C1—C10—F2B−66.2 (10)
C10—C1—C2—C3178.2 (3)N1—C1—C10—F3B−43.1 (9)
N3—N2—C3—C2−7.4 (4)C2—C1—C10—F3B138.7 (8)
N3—N2—C3—C4173.6 (3)N1—C1—C10—F2A−68.5 (5)
C1—C2—C3—N2179.6 (3)C2—C1—C10—F2A113.3 (5)
C1—C2—C3—C4−1.3 (4)N1—C1—C10—F1A42.9 (4)
N2—C3—C4—C90.1 (5)C2—C1—C10—F1A−135.3 (4)
C2—C3—C4—C9−179.0 (3)N1—C1—C10—F1B−142.3 (6)
N2—C3—C4—C5−179.9 (3)C2—C1—C10—F1B39.5 (7)
C2—C3—C4—C51.0 (4)C7—C6—C11—F4−120.2 (3)
C1—N1—C5—C4−1.3 (4)C5—C6—C11—F461.1 (4)
C1—N1—C5—C6178.2 (3)C7—C6—C11—F5119.5 (4)
C9—C4—C5—N1−179.7 (3)C5—C6—C11—F5−59.1 (4)
C3—C4—C5—N10.3 (4)C7—C6—C11—F6−1.1 (5)
C9—C4—C5—C60.8 (4)C5—C6—C11—F6−179.7 (3)
C3—C4—C5—C6−179.1 (3)N2—N3—C12—C13176.9 (3)
N1—C5—C6—C7179.1 (3)N3—C12—C13—C14−8.3 (5)
C4—C5—C6—C7−1.4 (5)N3—C12—C13—C17170.9 (4)
N1—C5—C6—C11−2.3 (4)C17—C13—C14—C15−0.3 (5)
C4—C5—C6—C11177.2 (3)C12—C13—C14—C15179.0 (3)
C5—C6—C7—C81.1 (5)C13—C14—C15—C161.0 (5)
C11—C6—C7—C8−177.5 (3)C17—N4—C16—C15−0.5 (6)
C6—C7—C8—C9−0.1 (6)C14—C15—C16—N4−0.6 (6)
C7—C8—C9—C4−0.5 (5)C16—N4—C17—C131.3 (6)
C5—C4—C9—C80.1 (5)C14—C13—C17—N4−0.9 (6)
C3—C4—C9—C8−180.0 (3)C12—C13—C17—N4179.8 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O1W0.88 (3)2.04 (3)2.914 (5)169 (3)
O1W—H1W···N4i0.83 (5)2.06 (6)2.855 (5)163 (7)
C9—H9···O1W0.932.423.331 (5)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O1W0.88 (3)2.04 (3)2.914 (5)169 (3)
O1W—H1W⋯N4i0.83 (5)2.06 (6)2.855 (5)163 (7)
C9—H9⋯O1W0.932.423.331 (5)167

Symmetry code: (i) .

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Authors:  Waleed Fedl Ali Al-Eryani; J Shylaja Kumari; H K Arunkashi; Suresh Babu Vepuri; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  6-Chloro-2-cyclo-propyl-4-(trifluoro-meth-yl)quinoline.

Authors:  H C Devarajegowda; H K Arunkashi; Suresh Babu Vepuri; N Chidananda; V D Jagadeesh Prasad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-05

2.  rac-(1R,2S,6R,7R)-4-{[(1E)-(2-Chloro-phen-yl)methyl-idene]amino}-1-isopropyl-7-methyl-4-aza-tricyclo-[5.2.2.0]undec-8-ene-3,5-dione.

Authors:  Jian-Xin Huang; Wen-Gui Duan; Xian-Li Ma; Qi-Jin Mo; Yin-Hua Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29
  2 in total

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