| Literature DB >> 21587521 |
Abstract
The title Schiff base compound, C(8)H(7)ClN(4)O(2)S, was prepared by the reaction of equimolar quanti-ties of 2-chloro-5-nitro-benzaldehyde with thio-semicarbazide in methanol. The mol-ecule adopts a trans configuration with respect to the azomethine group and the dihedral angle between the benzene ring and the thio-semicarbazide group is 6.8 (3)°. In the crystal, mol-ecules are linked through inter-molecular N-H⋯S hydrogen bonds, forming chains propagating in [010].Entities:
Year: 2010 PMID: 21587521 PMCID: PMC2983295 DOI: 10.1107/S1600536810035701
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H7ClN4O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1613 reflections |
| θ = 2.8–24.7° | |
| µ = 0.54 mm−1 | |
| β = 113.909 (2)° | Block, yellow |
| 0.18 × 0.17 × 0.17 mm | |
| Bruker SMART CCD diffractometer | 2344 independent reflections |
| Radiation source: fine-focus sealed tube | 1573 reflections with |
| graphite | |
| ω scans | θmax = 27.0°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 6657 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2344 reflections | (Δ/σ)max < 0.001 |
| 154 parameters | Δρmax = 0.20 e Å−3 |
| 4 restraints | Δρmin = −0.17 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.22502 (8) | −0.41154 (8) | 0.48549 (7) | 0.0669 (3) | |
| N1 | 0.11203 (19) | 0.1863 (3) | 0.67884 (19) | 0.0541 (6) | |
| N2 | 0.33718 (17) | 0.0503 (2) | 0.40689 (17) | 0.0402 (5) | |
| N3 | 0.39548 (18) | 0.0489 (2) | 0.32765 (18) | 0.0409 (5) | |
| N4 | 0.4229 (2) | 0.3150 (2) | 0.3570 (2) | 0.0543 (6) | |
| O1 | 0.13241 (19) | 0.3120 (2) | 0.64124 (19) | 0.0694 (6) | |
| O2 | 0.0674 (2) | 0.1755 (3) | 0.7540 (2) | 0.0965 (8) | |
| S1 | 0.50185 (6) | 0.18861 (7) | 0.19837 (6) | 0.0460 (2) | |
| C1 | 0.2313 (2) | −0.0903 (3) | 0.50752 (19) | 0.0375 (5) | |
| C2 | 0.1926 (2) | −0.2336 (3) | 0.5392 (2) | 0.0424 (6) | |
| C3 | 0.1273 (2) | −0.2416 (3) | 0.6133 (2) | 0.0504 (6) | |
| H3A | 0.1013 | −0.3389 | 0.6314 | 0.061* | |
| C4 | 0.1014 (2) | −0.1031 (3) | 0.6600 (2) | 0.0506 (6) | |
| H4 | 0.0584 | −0.1054 | 0.7107 | 0.061* | |
| C5 | 0.1405 (2) | 0.0385 (3) | 0.6300 (2) | 0.0422 (6) | |
| C6 | 0.2036 (2) | 0.0480 (3) | 0.5549 (2) | 0.0406 (5) | |
| H6 | 0.2275 | 0.1460 | 0.5360 | 0.049* | |
| C7 | 0.2974 (2) | −0.0829 (3) | 0.4273 (2) | 0.0407 (5) | |
| H7 | 0.3105 | −0.1747 | 0.3912 | 0.049* | |
| C8 | 0.4371 (2) | 0.1867 (2) | 0.3007 (2) | 0.0382 (5) | |
| H3 | 0.412 (2) | −0.0446 (19) | 0.301 (2) | 0.080* | |
| H4B | 0.394 (3) | 0.312 (3) | 0.4146 (19) | 0.080* | |
| H4A | 0.450 (2) | 0.4093 (18) | 0.346 (2) | 0.080* |
| Cl1 | 0.1005 (6) | 0.0371 (4) | 0.0800 (5) | −0.0034 (3) | 0.0541 (4) | 0.0020 (3) |
| N1 | 0.0526 (13) | 0.0621 (15) | 0.0564 (14) | 0.0075 (11) | 0.0311 (11) | −0.0029 (11) |
| N2 | 0.0496 (11) | 0.0372 (11) | 0.0447 (12) | 0.0008 (9) | 0.0303 (9) | 0.0032 (9) |
| N3 | 0.0569 (12) | 0.0283 (10) | 0.0533 (13) | 0.0023 (9) | 0.0385 (10) | 0.0013 (9) |
| N4 | 0.0835 (16) | 0.0338 (11) | 0.0712 (15) | −0.0090 (11) | 0.0578 (13) | −0.0081 (11) |
| O1 | 0.0868 (14) | 0.0503 (12) | 0.0874 (15) | 0.0001 (10) | 0.0521 (12) | −0.0058 (11) |
| O2 | 0.143 (2) | 0.0869 (16) | 0.1135 (18) | 0.0285 (15) | 0.1077 (17) | 0.0100 (14) |
| S1 | 0.0628 (4) | 0.0345 (3) | 0.0580 (4) | −0.0034 (3) | 0.0423 (3) | 0.0004 (3) |
| C1 | 0.0400 (12) | 0.0374 (13) | 0.0381 (13) | −0.0023 (10) | 0.0190 (11) | 0.0026 (10) |
| C2 | 0.0497 (14) | 0.0366 (12) | 0.0432 (14) | −0.0023 (10) | 0.0213 (11) | 0.0017 (10) |
| C3 | 0.0563 (15) | 0.0509 (15) | 0.0503 (15) | −0.0118 (12) | 0.0281 (13) | 0.0073 (12) |
| C4 | 0.0515 (15) | 0.0632 (17) | 0.0483 (15) | −0.0046 (13) | 0.0317 (12) | 0.0042 (13) |
| C5 | 0.0416 (13) | 0.0480 (14) | 0.0413 (14) | 0.0005 (11) | 0.0214 (11) | −0.0010 (11) |
| C6 | 0.0431 (13) | 0.0384 (13) | 0.0457 (14) | −0.0031 (10) | 0.0236 (11) | 0.0037 (10) |
| C7 | 0.0496 (14) | 0.0333 (12) | 0.0486 (14) | 0.0012 (10) | 0.0294 (12) | −0.0009 (11) |
| C8 | 0.0435 (13) | 0.0310 (12) | 0.0460 (14) | −0.0001 (10) | 0.0243 (11) | 0.0023 (10) |
| Cl1—C2 | 1.735 (2) | C1—C6 | 1.393 (3) |
| N1—O2 | 1.214 (3) | C1—C2 | 1.396 (3) |
| N1—O1 | 1.214 (3) | C1—C7 | 1.456 (3) |
| N1—C5 | 1.471 (3) | C2—C3 | 1.386 (3) |
| N2—C7 | 1.277 (3) | C3—C4 | 1.382 (4) |
| N2—N3 | 1.374 (2) | C3—H3A | 0.9300 |
| N3—C8 | 1.348 (3) | C4—C5 | 1.378 (3) |
| N3—H3 | 0.899 (10) | C4—H4 | 0.9300 |
| N4—C8 | 1.322 (3) | C5—C6 | 1.376 (3) |
| N4—H4B | 0.88 (3) | C6—H6 | 0.9300 |
| N4—H4A | 0.886 (10) | C7—H7 | 0.9300 |
| S1—C8 | 1.681 (2) | ||
| O2—N1—O1 | 123.3 (2) | C4—C3—H3A | 120.5 |
| O2—N1—C5 | 117.8 (2) | C2—C3—H3A | 120.5 |
| O1—N1—C5 | 118.9 (2) | C5—C4—C3 | 118.6 (2) |
| C7—N2—N3 | 116.36 (19) | C5—C4—H4 | 120.7 |
| C8—N3—N2 | 118.95 (18) | C3—C4—H4 | 120.7 |
| C8—N3—H3 | 121.7 (18) | C6—C5—C4 | 122.8 (2) |
| N2—N3—H3 | 119.1 (18) | C6—C5—N1 | 118.5 (2) |
| C8—N4—H4B | 122.8 (17) | C4—C5—N1 | 118.6 (2) |
| C8—N4—H4A | 122.1 (17) | C5—C6—C1 | 119.5 (2) |
| H4B—N4—H4A | 115 (2) | C5—C6—H6 | 120.3 |
| C6—C1—C2 | 117.5 (2) | C1—C6—H6 | 120.3 |
| C6—C1—C7 | 120.4 (2) | N2—C7—C1 | 119.6 (2) |
| C2—C1—C7 | 122.1 (2) | N2—C7—H7 | 120.2 |
| C3—C2—C1 | 122.6 (2) | C1—C7—H7 | 120.2 |
| C3—C2—Cl1 | 117.04 (19) | N4—C8—N3 | 116.9 (2) |
| C1—C2—Cl1 | 120.40 (18) | N4—C8—S1 | 123.49 (17) |
| C4—C3—C2 | 119.1 (2) | N3—C8—S1 | 119.59 (16) |
| H··· | ||||
| N4—H4A···S1i | 0.89 (1) | 2.53 (1) | 3.408 (2) | 173 (2) |
| N3—H3···S1ii | 0.90 (1) | 2.46 (1) | 3.3266 (19) | 161 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4 | 0.89 (1) | 2.53 (1) | 3.408 (2) | 173 (2) |
| N3—H3⋯S1ii | 0.90 (1) | 2.46 (1) | 3.3266 (19) | 161 (2) |
Symmetry codes: (i) ; (ii) .