Literature DB >> 21588426

7-Hy-droxy-6-meth-oxy-2H-chromen-2-one.

Hooi-Kheng Beh, Zhari Ismail, Mohd Zaini Asmawi, Wan-Sin Loh, Hoong-Kun Fun.   

Abstract

The title compound, C(10)H(8)O(4), is one of the coumarins existing in Morinda citrifolia L (Noni). The chromenone ring system is approximately planar with a maximum deviation of 0.0208 (14) Å. The meth-oxy group does not deviate from this plane [C-O-C-C torsion angle = -1.5 (3)°], indicating that the whole mol-ecule is almost planar. In the crystal packing, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into chains. These are further connected by C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588426      PMCID: PMC3007346          DOI: 10.1107/S1600536810029296

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and the biological activity of Morinda citrifolia L, see: Wang et al. (2002 ▶); Samoylenko et al. (2006 ▶); Silva et al. (2001 ▶); Goy et al. (1993 ▶); Cassady et al. (1979 ▶); Shaw et al. (2003 ▶); Ding et al. (2008 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H8O4 M = 192.16 Orthorhombic, a = 7.0771 (2) Å b = 17.3485 (4) Å c = 6.9672 (2) Å V = 855.41 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.39 × 0.11 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.956, T max = 0.991 9630 measured reflections 1364 independent reflections 1213 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.094 S = 1.07 1364 reflections 132 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029296/bt5305sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029296/bt5305Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8O4F(000) = 400
Mr = 192.16Dx = 1.492 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3125 reflections
a = 7.0771 (2) Åθ = 2.4–29.9°
b = 17.3485 (4) ŵ = 0.12 mm1
c = 6.9672 (2) ÅT = 100 K
V = 855.41 (4) Å3Needle, yellow
Z = 40.39 × 0.11 × 0.08 mm
Bruker SMART APEXII CCD area-detector diffractometer1364 independent reflections
Radiation source: fine-focus sealed tube1213 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 30.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→9
Tmin = 0.956, Tmax = 0.991k = −24→24
9630 measured reflectionsl = −9→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0496P)2 + 0.1813P] where P = (Fo2 + 2Fc2)/3
1364 reflections(Δ/σ)max = 0.001
132 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.82231 (19)0.37644 (6)0.5023 (2)0.0161 (3)
O20.8589 (2)0.49194 (7)0.3781 (2)0.0221 (3)
O30.7202 (2)0.13880 (7)0.8064 (2)0.0223 (3)
O40.81670 (19)0.05917 (7)0.4922 (2)0.0199 (3)
C10.7724 (3)0.17732 (9)0.6463 (3)0.0153 (3)
C20.7725 (3)0.25710 (9)0.6524 (3)0.0147 (3)
H2A0.73820.28320.76360.018*
C30.8251 (2)0.29720 (9)0.4884 (3)0.0144 (3)
C40.8665 (2)0.42295 (9)0.3488 (3)0.0171 (4)
C50.9176 (3)0.38545 (10)0.1709 (3)0.0182 (4)
H5A0.94610.41520.06370.022*
C60.9243 (2)0.30757 (10)0.1584 (3)0.0171 (3)
H6A0.96060.28460.04370.021*
C70.8762 (3)0.26016 (9)0.3195 (3)0.0145 (3)
C80.8758 (2)0.17879 (9)0.3153 (3)0.0151 (3)
H8A0.90990.15290.20370.018*
C90.8248 (3)0.13773 (9)0.4770 (3)0.0148 (3)
C100.8609 (3)0.01496 (9)0.3244 (3)0.0218 (4)
H10A0.8482−0.03890.35270.033*
H10B0.98840.02560.28540.033*
H10C0.77580.02860.22260.033*
H1O30.712 (4)0.0869 (16)0.782 (5)0.048 (8)*
U11U22U33U12U13U23
O10.0216 (6)0.0117 (5)0.0150 (6)−0.0002 (4)−0.0009 (6)0.0010 (5)
O20.0300 (7)0.0133 (5)0.0230 (8)−0.0011 (5)−0.0046 (6)0.0033 (5)
O30.0378 (8)0.0135 (5)0.0157 (7)−0.0024 (5)0.0077 (7)0.0012 (6)
O40.0300 (7)0.0116 (5)0.0182 (7)−0.0008 (5)0.0038 (6)−0.0021 (6)
C10.0174 (8)0.0150 (7)0.0135 (9)−0.0022 (6)−0.0016 (8)0.0022 (7)
C20.0175 (8)0.0149 (7)0.0117 (8)−0.0005 (6)0.0008 (8)−0.0013 (7)
C30.0153 (7)0.0117 (6)0.0162 (9)−0.0009 (6)−0.0027 (7)0.0029 (8)
C40.0170 (8)0.0158 (7)0.0185 (10)−0.0023 (6)−0.0039 (7)0.0064 (7)
C50.0196 (8)0.0193 (7)0.0156 (9)−0.0019 (6)−0.0017 (8)0.0056 (7)
C60.0166 (8)0.0199 (7)0.0149 (8)−0.0002 (6)−0.0007 (8)0.0022 (7)
C70.0147 (8)0.0150 (7)0.0138 (9)0.0003 (6)−0.0015 (8)0.0006 (7)
C80.0170 (8)0.0150 (7)0.0134 (8)−0.0005 (6)0.0006 (8)−0.0010 (7)
C90.0158 (8)0.0112 (6)0.0173 (9)−0.0001 (6)−0.0010 (7)−0.0008 (7)
C100.0284 (9)0.0148 (7)0.0223 (10)0.0015 (6)0.0034 (9)−0.0064 (8)
O1—C41.376 (2)C4—C51.446 (3)
O1—C31.3781 (18)C5—C61.355 (2)
O2—C41.215 (2)C5—H5A0.9300
O3—C11.352 (2)C6—C71.432 (2)
O3—H1O30.92 (3)C6—H6A0.9300
O4—C91.3682 (18)C7—C81.412 (2)
O4—C101.433 (2)C8—C91.381 (3)
C1—C21.385 (2)C8—H8A0.9300
C1—C91.415 (3)C10—H10A0.9600
C2—C31.388 (3)C10—H10B0.9600
C2—H2A0.9300C10—H10C0.9600
C3—C71.389 (3)
C4—O1—C3121.82 (16)C5—C6—C7120.94 (18)
C1—O3—H1O3111 (2)C5—C6—H6A119.5
C9—O4—C10117.42 (16)C7—C6—H6A119.5
O3—C1—C2117.99 (16)C3—C7—C8118.68 (16)
O3—C1—C9121.33 (15)C3—C7—C6117.39 (14)
C2—C1—C9120.68 (16)C8—C7—C6123.93 (17)
C1—C2—C3118.44 (16)C9—C8—C7119.95 (16)
C1—C2—H2A120.8C9—C8—H8A120.0
C3—C2—H2A120.8C7—C8—H8A120.0
O1—C3—C2116.00 (17)O4—C9—C8126.04 (17)
O1—C3—C7121.65 (16)O4—C9—C1114.05 (17)
C2—C3—C7122.35 (14)C8—C9—C1119.90 (14)
O2—C4—O1115.91 (18)O4—C10—H10A109.5
O2—C4—C5126.75 (17)O4—C10—H10B109.5
O1—C4—C5117.34 (14)H10A—C10—H10B109.5
C6—C5—C4120.84 (17)O4—C10—H10C109.5
C6—C5—H5A119.6H10A—C10—H10C109.5
C4—C5—H5A119.6H10B—C10—H10C109.5
O3—C1—C2—C3−179.72 (16)C2—C3—C7—C6178.81 (16)
C9—C1—C2—C30.1 (3)C5—C6—C7—C3−0.8 (3)
C4—O1—C3—C2−178.29 (15)C5—C6—C7—C8178.45 (16)
C4—O1—C3—C71.2 (2)C3—C7—C8—C90.2 (2)
C1—C2—C3—O1179.84 (14)C6—C7—C8—C9−179.06 (17)
C1—C2—C3—C70.3 (3)C10—O4—C9—C8−1.5 (3)
C3—O1—C4—O2179.90 (15)C10—O4—C9—C1177.71 (15)
C3—O1—C4—C5−0.3 (2)C7—C8—C9—O4179.38 (15)
O2—C4—C5—C6178.64 (18)C7—C8—C9—C10.2 (3)
O1—C4—C5—C6−1.1 (3)O3—C1—C9—O40.2 (3)
C4—C5—C6—C71.7 (3)C2—C1—C9—O4−179.60 (15)
O1—C3—C7—C8−179.93 (14)O3—C1—C9—C8179.42 (15)
C2—C3—C7—C8−0.5 (3)C2—C1—C9—C8−0.4 (3)
O1—C3—C7—C6−0.7 (2)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O2i0.92 (3)1.85 (3)2.6558 (17)146 (3)
C5—H5A···O2ii0.932.483.345 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O2i0.92 (3)1.85 (3)2.6558 (17)146 (3)
C5—H5A⋯O2ii0.932.483.345 (2)154

Symmetry codes: (i) ; (ii) .

  7 in total

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