| Literature DB >> 21588426 |
Hooi-Kheng Beh, Zhari Ismail, Mohd Zaini Asmawi, Wan-Sin Loh, Hoong-Kun Fun.
Abstract
The title compound, C(10)H(8)O(4), is one of the coumarins existing in Morinda citrifolia L (Noni). The chromenone ring system is approximately planar with a maximum deviation of 0.0208 (14) Å. The meth-oxy group does not deviate from this plane [C-O-C-C torsion angle = -1.5 (3)°], indicating that the whole mol-ecule is almost planar. In the crystal packing, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into chains. These are further connected by C-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21588426 PMCID: PMC3007346 DOI: 10.1107/S1600536810029296
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H8O4 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 3125 reflections |
| θ = 2.4–29.9° | |
| µ = 0.12 mm−1 | |
| Needle, yellow | |
| 0.39 × 0.11 × 0.08 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 1364 independent reflections |
| Radiation source: fine-focus sealed tube | 1213 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.3°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 9630 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1364 reflections | (Δ/σ)max = 0.001 |
| 132 parameters | Δρmax = 0.33 e Å−3 |
| 1 restraint | Δρmin = −0.26 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.82231 (19) | 0.37644 (6) | 0.5023 (2) | 0.0161 (3) | |
| O2 | 0.8589 (2) | 0.49194 (7) | 0.3781 (2) | 0.0221 (3) | |
| O3 | 0.7202 (2) | 0.13880 (7) | 0.8064 (2) | 0.0223 (3) | |
| O4 | 0.81670 (19) | 0.05917 (7) | 0.4922 (2) | 0.0199 (3) | |
| C1 | 0.7724 (3) | 0.17732 (9) | 0.6463 (3) | 0.0153 (3) | |
| C2 | 0.7725 (3) | 0.25710 (9) | 0.6524 (3) | 0.0147 (3) | |
| H2A | 0.7382 | 0.2832 | 0.7636 | 0.018* | |
| C3 | 0.8251 (2) | 0.29720 (9) | 0.4884 (3) | 0.0144 (3) | |
| C4 | 0.8665 (2) | 0.42295 (9) | 0.3488 (3) | 0.0171 (4) | |
| C5 | 0.9176 (3) | 0.38545 (10) | 0.1709 (3) | 0.0182 (4) | |
| H5A | 0.9461 | 0.4152 | 0.0637 | 0.022* | |
| C6 | 0.9243 (2) | 0.30757 (10) | 0.1584 (3) | 0.0171 (3) | |
| H6A | 0.9606 | 0.2846 | 0.0437 | 0.021* | |
| C7 | 0.8762 (3) | 0.26016 (9) | 0.3195 (3) | 0.0145 (3) | |
| C8 | 0.8758 (2) | 0.17879 (9) | 0.3153 (3) | 0.0151 (3) | |
| H8A | 0.9099 | 0.1529 | 0.2037 | 0.018* | |
| C9 | 0.8248 (3) | 0.13773 (9) | 0.4770 (3) | 0.0148 (3) | |
| C10 | 0.8609 (3) | 0.01496 (9) | 0.3244 (3) | 0.0218 (4) | |
| H10A | 0.8482 | −0.0389 | 0.3527 | 0.033* | |
| H10B | 0.9884 | 0.0256 | 0.2854 | 0.033* | |
| H10C | 0.7758 | 0.0286 | 0.2226 | 0.033* | |
| H1O3 | 0.712 (4) | 0.0869 (16) | 0.782 (5) | 0.048 (8)* |
| O1 | 0.0216 (6) | 0.0117 (5) | 0.0150 (6) | −0.0002 (4) | −0.0009 (6) | 0.0010 (5) |
| O2 | 0.0300 (7) | 0.0133 (5) | 0.0230 (8) | −0.0011 (5) | −0.0046 (6) | 0.0033 (5) |
| O3 | 0.0378 (8) | 0.0135 (5) | 0.0157 (7) | −0.0024 (5) | 0.0077 (7) | 0.0012 (6) |
| O4 | 0.0300 (7) | 0.0116 (5) | 0.0182 (7) | −0.0008 (5) | 0.0038 (6) | −0.0021 (6) |
| C1 | 0.0174 (8) | 0.0150 (7) | 0.0135 (9) | −0.0022 (6) | −0.0016 (8) | 0.0022 (7) |
| C2 | 0.0175 (8) | 0.0149 (7) | 0.0117 (8) | −0.0005 (6) | 0.0008 (8) | −0.0013 (7) |
| C3 | 0.0153 (7) | 0.0117 (6) | 0.0162 (9) | −0.0009 (6) | −0.0027 (7) | 0.0029 (8) |
| C4 | 0.0170 (8) | 0.0158 (7) | 0.0185 (10) | −0.0023 (6) | −0.0039 (7) | 0.0064 (7) |
| C5 | 0.0196 (8) | 0.0193 (7) | 0.0156 (9) | −0.0019 (6) | −0.0017 (8) | 0.0056 (7) |
| C6 | 0.0166 (8) | 0.0199 (7) | 0.0149 (8) | −0.0002 (6) | −0.0007 (8) | 0.0022 (7) |
| C7 | 0.0147 (8) | 0.0150 (7) | 0.0138 (9) | 0.0003 (6) | −0.0015 (8) | 0.0006 (7) |
| C8 | 0.0170 (8) | 0.0150 (7) | 0.0134 (8) | −0.0005 (6) | 0.0006 (8) | −0.0010 (7) |
| C9 | 0.0158 (8) | 0.0112 (6) | 0.0173 (9) | −0.0001 (6) | −0.0010 (7) | −0.0008 (7) |
| C10 | 0.0284 (9) | 0.0148 (7) | 0.0223 (10) | 0.0015 (6) | 0.0034 (9) | −0.0064 (8) |
| O1—C4 | 1.376 (2) | C4—C5 | 1.446 (3) |
| O1—C3 | 1.3781 (18) | C5—C6 | 1.355 (2) |
| O2—C4 | 1.215 (2) | C5—H5A | 0.9300 |
| O3—C1 | 1.352 (2) | C6—C7 | 1.432 (2) |
| O3—H1O3 | 0.92 (3) | C6—H6A | 0.9300 |
| O4—C9 | 1.3682 (18) | C7—C8 | 1.412 (2) |
| O4—C10 | 1.433 (2) | C8—C9 | 1.381 (3) |
| C1—C2 | 1.385 (2) | C8—H8A | 0.9300 |
| C1—C9 | 1.415 (3) | C10—H10A | 0.9600 |
| C2—C3 | 1.388 (3) | C10—H10B | 0.9600 |
| C2—H2A | 0.9300 | C10—H10C | 0.9600 |
| C3—C7 | 1.389 (3) | ||
| C4—O1—C3 | 121.82 (16) | C5—C6—C7 | 120.94 (18) |
| C1—O3—H1O3 | 111 (2) | C5—C6—H6A | 119.5 |
| C9—O4—C10 | 117.42 (16) | C7—C6—H6A | 119.5 |
| O3—C1—C2 | 117.99 (16) | C3—C7—C8 | 118.68 (16) |
| O3—C1—C9 | 121.33 (15) | C3—C7—C6 | 117.39 (14) |
| C2—C1—C9 | 120.68 (16) | C8—C7—C6 | 123.93 (17) |
| C1—C2—C3 | 118.44 (16) | C9—C8—C7 | 119.95 (16) |
| C1—C2—H2A | 120.8 | C9—C8—H8A | 120.0 |
| C3—C2—H2A | 120.8 | C7—C8—H8A | 120.0 |
| O1—C3—C2 | 116.00 (17) | O4—C9—C8 | 126.04 (17) |
| O1—C3—C7 | 121.65 (16) | O4—C9—C1 | 114.05 (17) |
| C2—C3—C7 | 122.35 (14) | C8—C9—C1 | 119.90 (14) |
| O2—C4—O1 | 115.91 (18) | O4—C10—H10A | 109.5 |
| O2—C4—C5 | 126.75 (17) | O4—C10—H10B | 109.5 |
| O1—C4—C5 | 117.34 (14) | H10A—C10—H10B | 109.5 |
| C6—C5—C4 | 120.84 (17) | O4—C10—H10C | 109.5 |
| C6—C5—H5A | 119.6 | H10A—C10—H10C | 109.5 |
| C4—C5—H5A | 119.6 | H10B—C10—H10C | 109.5 |
| O3—C1—C2—C3 | −179.72 (16) | C2—C3—C7—C6 | 178.81 (16) |
| C9—C1—C2—C3 | 0.1 (3) | C5—C6—C7—C3 | −0.8 (3) |
| C4—O1—C3—C2 | −178.29 (15) | C5—C6—C7—C8 | 178.45 (16) |
| C4—O1—C3—C7 | 1.2 (2) | C3—C7—C8—C9 | 0.2 (2) |
| C1—C2—C3—O1 | 179.84 (14) | C6—C7—C8—C9 | −179.06 (17) |
| C1—C2—C3—C7 | 0.3 (3) | C10—O4—C9—C8 | −1.5 (3) |
| C3—O1—C4—O2 | 179.90 (15) | C10—O4—C9—C1 | 177.71 (15) |
| C3—O1—C4—C5 | −0.3 (2) | C7—C8—C9—O4 | 179.38 (15) |
| O2—C4—C5—C6 | 178.64 (18) | C7—C8—C9—C1 | 0.2 (3) |
| O1—C4—C5—C6 | −1.1 (3) | O3—C1—C9—O4 | 0.2 (3) |
| C4—C5—C6—C7 | 1.7 (3) | C2—C1—C9—O4 | −179.60 (15) |
| O1—C3—C7—C8 | −179.93 (14) | O3—C1—C9—C8 | 179.42 (15) |
| C2—C3—C7—C8 | −0.5 (3) | C2—C1—C9—C8 | −0.4 (3) |
| O1—C3—C7—C6 | −0.7 (2) |
| H··· | ||||
| O3—H1O3···O2i | 0.92 (3) | 1.85 (3) | 2.6558 (17) | 146 (3) |
| C5—H5A···O2ii | 0.93 | 2.48 | 3.345 (2) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H1 | 0.92 (3) | 1.85 (3) | 2.6558 (17) | 146 (3) |
| C5—H5 | 0.93 | 2.48 | 3.345 (2) | 154 |
Symmetry codes: (i) ; (ii) .