| Literature DB >> 21588154 |
Mohammad T M Al-Dajani, Habibah A Wahab, Nornisah Mohamed, Jia Hao Goh, Hoong-Kun Fun.
Abstract
In the title compound, (C(5)H(8)N(3))(2)[Co(H(2)O)(6)](SO(4))(2)·2H(2)O, the complete complex cation is generated by crystallographic inversion symmetry, such that the Co(II) cation is octa-hedrally coordinated by six water mol-ecules. The organic cation is essentially planar, with a maximum deviation of 0.013 (1) Å. In the crystal structure, the ions and mol-ecules are linked into a pseudo-layered three-dimensional supra-molecular network via O-H⋯O and N-H⋯O hydrogen bonds. Weak inter-molecular π-π inter-actions further stabilize the crystal structure [centroid-centroid distance = 3.5231 (4) Å].Entities:
Year: 2010 PMID: 21588154 PMCID: PMC3007492 DOI: 10.1107/S1600536810026693
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C5H8N3)2[Co(H2O)6](SO4)2·2H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 9901 reflections |
| θ = 3.5–37.6° | |
| µ = 0.99 mm−1 | |
| Block, red | |
| 0.35 × 0.31 × 0.21 mm |
| Bruker SMART APEXII CCD diffractometer | 6333 independent reflections |
| Radiation source: fine-focus sealed tube | 5758 reflections with |
| graphite | |
| φ and ω scans | θmax = 37.7°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 86569 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 6333 reflections | (Δ/σ)max = 0.001 |
| 224 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.38 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Co1 | 0.5000 | 0.5000 | 0.5000 | 0.00813 (3) | |
| O1W | 0.60030 (8) | 0.62537 (4) | 0.46843 (2) | 0.01288 (8) | |
| O2W | 0.37213 (8) | 0.57254 (4) | 0.56500 (2) | 0.01253 (8) | |
| O3W | 0.23481 (8) | 0.51148 (4) | 0.45350 (2) | 0.01281 (9) | |
| O4W | 0.50958 (8) | 0.83091 (4) | 0.53640 (2) | 0.01281 (9) | |
| S1 | 0.86829 (2) | 0.696844 (10) | 0.616698 (6) | 0.00760 (3) | |
| O1 | 0.93408 (8) | 0.79469 (3) | 0.62001 (2) | 0.01200 (8) | |
| O2 | 0.64851 (8) | 0.69401 (4) | 0.60506 (2) | 0.01254 (8) | |
| O3 | 0.97898 (8) | 0.64929 (4) | 0.57237 (2) | 0.01158 (8) | |
| O4 | 0.90760 (9) | 0.65018 (4) | 0.66828 (2) | 0.01417 (9) | |
| N1 | 0.89603 (9) | 0.85415 (4) | 0.72893 (2) | 0.00943 (8) | |
| N2 | 0.97396 (10) | 0.72061 (4) | 0.77643 (3) | 0.01420 (10) | |
| N3 | 0.82794 (10) | 0.97979 (4) | 0.67371 (2) | 0.01328 (10) | |
| C1 | 0.91746 (10) | 0.81030 (4) | 0.77745 (2) | 0.00979 (9) | |
| C2 | 0.88017 (10) | 0.86024 (5) | 0.82461 (3) | 0.01229 (10) | |
| C3 | 0.82632 (11) | 0.95288 (5) | 0.82032 (3) | 0.01297 (10) | |
| C4 | 0.80547 (11) | 0.99626 (5) | 0.77070 (3) | 0.01179 (10) | |
| C5 | 0.84005 (9) | 0.94478 (4) | 0.72390 (2) | 0.00965 (9) | |
| H1W1 | 0.542 (2) | 0.6492 (10) | 0.4413 (6) | 0.030 (4)* | |
| H2W1 | 0.724 (2) | 0.6368 (10) | 0.4648 (6) | 0.028 (3)* | |
| H1W2 | 0.451 (2) | 0.6080 (10) | 0.5781 (6) | 0.025 (3)* | |
| H2W2 | 0.264 (2) | 0.5990 (10) | 0.5680 (6) | 0.030 (4)* | |
| H1W3 | 0.160 (2) | 0.5580 (11) | 0.4558 (6) | 0.029 (4)* | |
| H2W3 | 0.165 (2) | 0.4675 (11) | 0.4463 (6) | 0.028 (3)* | |
| H1W4 | 0.559 (3) | 0.7850 (12) | 0.5544 (6) | 0.036 (4)* | |
| H2W4 | 0.514 (2) | 0.8192 (13) | 0.5055 (6) | 0.032 (4)* | |
| H1N1 | 0.923 (2) | 0.8224 (9) | 0.6993 (5) | 0.021 (3)* | |
| H2N2 | 1.014 (2) | 0.6963 (10) | 0.8039 (6) | 0.023 (3)* | |
| H1N3 | 0.836 (2) | 0.9442 (9) | 0.6464 (5) | 0.021 (3)* | |
| H1N2 | 0.983 (2) | 0.6940 (10) | 0.7493 (6) | 0.023 (3)* | |
| H2N3 | 0.769 (2) | 1.0311 (10) | 0.6695 (5) | 0.022 (3)* | |
| H2 | 0.888 (2) | 0.8281 (9) | 0.8575 (5) | 0.024 (3)* | |
| H3 | 0.794 (2) | 0.9854 (9) | 0.8525 (5) | 0.017 (3)* | |
| H4 | 0.768 (2) | 1.0617 (9) | 0.7676 (5) | 0.021 (3)* |
| Co1 | 0.00772 (5) | 0.00786 (5) | 0.00880 (5) | −0.00035 (4) | −0.00063 (4) | 0.00026 (3) |
| O1W | 0.01163 (19) | 0.0125 (2) | 0.0145 (2) | −0.00216 (16) | −0.00227 (17) | 0.00427 (15) |
| O2W | 0.01003 (19) | 0.0139 (2) | 0.01366 (19) | −0.00017 (16) | −0.00004 (16) | −0.00345 (16) |
| O3W | 0.01056 (19) | 0.01071 (19) | 0.0172 (2) | 0.00053 (16) | −0.00386 (17) | −0.00187 (15) |
| O4W | 0.0138 (2) | 0.0137 (2) | 0.01087 (19) | 0.00064 (16) | −0.00068 (16) | −0.00023 (16) |
| S1 | 0.00845 (6) | 0.00744 (6) | 0.00691 (5) | −0.00042 (4) | 0.00023 (4) | −0.00030 (4) |
| O1 | 0.0154 (2) | 0.00811 (18) | 0.01252 (19) | −0.00296 (16) | 0.00154 (17) | −0.00110 (14) |
| O2 | 0.00834 (18) | 0.0135 (2) | 0.0158 (2) | −0.00022 (15) | −0.00093 (16) | −0.00211 (16) |
| O3 | 0.01201 (19) | 0.01219 (19) | 0.01052 (18) | 0.00079 (15) | 0.00229 (15) | −0.00298 (15) |
| O4 | 0.0201 (2) | 0.0137 (2) | 0.00873 (17) | −0.00068 (18) | −0.00182 (17) | 0.00294 (15) |
| N1 | 0.0103 (2) | 0.0097 (2) | 0.00826 (19) | 0.00011 (16) | −0.00031 (16) | −0.00037 (15) |
| N2 | 0.0180 (3) | 0.0110 (2) | 0.0136 (2) | 0.00237 (19) | −0.0038 (2) | 0.00052 (18) |
| N3 | 0.0147 (2) | 0.0138 (2) | 0.0113 (2) | 0.00146 (19) | −0.00063 (19) | 0.00307 (17) |
| C1 | 0.0089 (2) | 0.0109 (2) | 0.0096 (2) | −0.00068 (18) | −0.00122 (18) | 0.00055 (17) |
| C2 | 0.0127 (2) | 0.0153 (3) | 0.0089 (2) | 0.0001 (2) | −0.00031 (19) | −0.00021 (18) |
| C3 | 0.0119 (2) | 0.0157 (3) | 0.0113 (2) | 0.0000 (2) | 0.0004 (2) | −0.00380 (19) |
| C4 | 0.0112 (2) | 0.0108 (2) | 0.0134 (2) | 0.00028 (19) | 0.0003 (2) | −0.00217 (18) |
| C5 | 0.0080 (2) | 0.0101 (2) | 0.0109 (2) | −0.00041 (18) | −0.00031 (18) | 0.00074 (17) |
| Co1—O1Wi | 2.0801 (5) | S1—O3 | 1.4875 (5) |
| Co1—O1W | 2.0801 (5) | N1—C1 | 1.3652 (8) |
| Co1—O2Wi | 2.0985 (5) | N1—C5 | 1.3654 (8) |
| Co1—O2W | 2.0985 (5) | N1—H1N1 | 0.884 (13) |
| Co1—O3Wi | 2.1064 (5) | N2—C1 | 1.3478 (9) |
| Co1—O3W | 2.1064 (5) | N2—H2N2 | 0.810 (14) |
| O1W—H1W1 | 0.848 (16) | N2—H1N2 | 0.776 (15) |
| O1W—H2W1 | 0.841 (16) | N3—C5 | 1.3438 (8) |
| O2W—H1W2 | 0.799 (15) | N3—H1N3 | 0.851 (14) |
| O2W—H2W2 | 0.817 (16) | N3—H2N3 | 0.843 (15) |
| O3W—H1W3 | 0.836 (16) | C1—C2 | 1.3942 (9) |
| O3W—H2W3 | 0.806 (16) | C2—C3 | 1.3881 (10) |
| O4W—H1W4 | 0.863 (17) | C2—H2 | 0.938 (13) |
| O4W—H2W4 | 0.784 (16) | C3—C4 | 1.3859 (10) |
| S1—O4 | 1.4672 (5) | C3—H3 | 0.949 (13) |
| S1—O1 | 1.4803 (5) | C4—C5 | 1.3953 (9) |
| S1—O2 | 1.4842 (5) | C4—H4 | 0.980 (13) |
| O1Wi—Co1—O1W | 180.0 | O4—S1—O3 | 110.06 (3) |
| O1Wi—Co1—O2Wi | 89.02 (2) | O1—S1—O3 | 109.64 (3) |
| O1W—Co1—O2Wi | 90.98 (2) | O2—S1—O3 | 109.10 (3) |
| O1Wi—Co1—O2W | 90.98 (2) | C1—N1—C5 | 123.55 (5) |
| O1W—Co1—O2W | 89.02 (2) | C1—N1—H1N1 | 117.9 (9) |
| O2Wi—Co1—O2W | 180.0 | C5—N1—H1N1 | 118.5 (9) |
| O1Wi—Co1—O3Wi | 89.56 (2) | C1—N2—H2N2 | 119.5 (10) |
| O1W—Co1—O3Wi | 90.44 (2) | C1—N2—H1N2 | 120.9 (11) |
| O2Wi—Co1—O3Wi | 92.50 (2) | H2N2—N2—H1N2 | 119.0 (15) |
| O2W—Co1—O3Wi | 87.50 (2) | C5—N3—H1N3 | 120.2 (9) |
| O1Wi—Co1—O3W | 90.44 (2) | C5—N3—H2N3 | 118.2 (9) |
| O1W—Co1—O3W | 89.56 (2) | H1N3—N3—H2N3 | 117.5 (13) |
| O2Wi—Co1—O3W | 87.50 (2) | N2—C1—N1 | 117.24 (6) |
| O2W—Co1—O3W | 92.50 (2) | N2—C1—C2 | 124.16 (6) |
| O3Wi—Co1—O3W | 180.0 | N1—C1—C2 | 118.60 (6) |
| Co1—O1W—H1W1 | 120.3 (10) | C3—C2—C1 | 118.66 (6) |
| Co1—O1W—H2W1 | 121.4 (10) | C3—C2—H2 | 123.9 (8) |
| H1W1—O1W—H2W1 | 106.3 (14) | C1—C2—H2 | 117.4 (8) |
| Co1—O2W—H1W2 | 111.5 (11) | C4—C3—C2 | 121.91 (6) |
| Co1—O2W—H2W2 | 131.1 (10) | C4—C3—H3 | 120.0 (8) |
| H1W2—O2W—H2W2 | 103.8 (14) | C2—C3—H3 | 118.0 (8) |
| Co1—O3W—H1W3 | 121.3 (10) | C3—C4—C5 | 118.63 (6) |
| Co1—O3W—H2W3 | 122.5 (11) | C3—C4—H4 | 122.0 (8) |
| H1W3—O3W—H2W3 | 108.0 (16) | C5—C4—H4 | 119.4 (8) |
| H1W4—O4W—H2W4 | 109.0 (17) | N3—C5—N1 | 117.44 (6) |
| O4—S1—O1 | 109.73 (3) | N3—C5—C4 | 123.90 (6) |
| O4—S1—O2 | 109.29 (3) | N1—C5—C4 | 118.63 (6) |
| O1—S1—O2 | 109.01 (3) | ||
| C5—N1—C1—N2 | −179.89 (6) | C2—C3—C4—C5 | −0.05 (11) |
| C5—N1—C1—C2 | 0.09 (10) | C1—N1—C5—N3 | 178.90 (6) |
| N2—C1—C2—C3 | 178.85 (7) | C1—N1—C5—C4 | 0.99 (10) |
| N1—C1—C2—C3 | −1.13 (10) | C3—C4—C5—N3 | −178.76 (7) |
| C1—C2—C3—C4 | 1.12 (11) | C3—C4—C5—N1 | −0.99 (10) |
| H··· | ||||
| O1W—H1W1···O1ii | 0.848 (14) | 1.863 (15) | 2.7088 (7) | 175.4 (13) |
| O1W—H2W1···O4Wiii | 0.840 (13) | 1.948 (13) | 2.7853 (8) | 174.2 (13) |
| O2W—H1W2···O2 | 0.800 (14) | 1.923 (14) | 2.7217 (8) | 176.3 (14) |
| O2W—H2W2···O3iv | 0.815 (14) | 2.025 (13) | 2.8352 (8) | 172.7 (15) |
| O3W—H1W3···O4Wii | 0.836 (15) | 1.898 (15) | 2.7318 (8) | 175.1 (13) |
| O3W—H2W3···O3i | 0.805 (15) | 1.991 (15) | 2.7928 (8) | 173.6 (14) |
| O4W—H1W4···O2 | 0.863 (17) | 1.910 (17) | 2.7643 (8) | 169.9 (16) |
| O4W—H2W4···O3ii | 0.784 (15) | 1.994 (15) | 2.7157 (7) | 152.8 (18) |
| N1—H1N1···O1 | 0.883 (13) | 2.005 (12) | 2.8412 (7) | 157.6 (12) |
| N2—H2N2···O2v | 0.810 (15) | 2.424 (15) | 3.1769 (9) | 155.1 (13) |
| N3—H1N3···O1 | 0.851 (13) | 2.347 (13) | 3.0660 (7) | 142.6 (11) |
| N2—H1N2···O4 | 0.776 (15) | 2.162 (15) | 2.8977 (9) | 158.5 (14) |
| N3—H2N3···O4vi | 0.844 (14) | 2.079 (14) | 2.9155 (8) | 171.0 (12) |
Selected bond lengths (Å)
| Co1—O1 | 2.0801 (5) |
| Co1—O2 | 2.0985 (5) |
| Co1—O3 | 2.1064 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.848 (14) | 1.863 (15) | 2.7088 (7) | 175.4 (13) |
| O1 | 0.840 (13) | 1.948 (13) | 2.7853 (8) | 174.2 (13) |
| O2 | 0.800 (14) | 1.923 (14) | 2.7217 (8) | 176.3 (14) |
| O2 | 0.815 (14) | 2.025 (13) | 2.8352 (8) | 172.7 (15) |
| O3 | 0.836 (15) | 1.898 (15) | 2.7318 (8) | 175.1 (13) |
| O3 | 0.805 (15) | 1.991 (15) | 2.7928 (8) | 173.6 (14) |
| O4 | 0.863 (17) | 1.910 (17) | 2.7643 (8) | 169.9 (16) |
| O4 | 0.784 (15) | 1.994 (15) | 2.7157 (7) | 152.8 (18) |
| N1—H1 | 0.883 (13) | 2.005 (12) | 2.8412 (7) | 157.6 (12) |
| N2—H2 | 0.810 (15) | 2.424 (15) | 3.1769 (9) | 155.1 (13) |
| N3—H1 | 0.851 (13) | 2.347 (13) | 3.0660 (7) | 142.6 (11) |
| N2—H1 | 0.776 (15) | 2.162 (15) | 2.8977 (9) | 158.5 (14) |
| N3—H2 | 0.844 (14) | 2.079 (14) | 2.9155 (8) | 171.0 (12) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .