Literature DB >> 21588154

Bis(2,6-diamino-pyridin-1-ium) hexa-aqua-cobalt(II) disulfate dihydrate.

Mohammad T M Al-Dajani, Habibah A Wahab, Nornisah Mohamed, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

In the title compound, (C(5)H(8)N(3))(2)[Co(H(2)O)(6)](SO(4))(2)·2H(2)O, the complete complex cation is generated by crystallographic inversion symmetry, such that the Co(II) cation is octa-hedrally coordinated by six water mol-ecules. The organic cation is essentially planar, with a maximum deviation of 0.013 (1) Å. In the crystal structure, the ions and mol-ecules are linked into a pseudo-layered three-dimensional supra-molecular network via O-H⋯O and N-H⋯O hydrogen bonds. Weak inter-molecular π-π inter-actions further stabilize the crystal structure [centroid-centroid distance = 3.5231 (4) Å].

Entities:  

Year:  2010        PMID: 21588154      PMCID: PMC3007492          DOI: 10.1107/S1600536810026693

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of 1,6-diamino­pyridinium ions, see: Abu Zuhri & Cox (1989 ▶); Inuzuka & Fujimoto (1990 ▶); Ma & Huang (2003 ▶); Patani & LaVoie (1996 ▶). For closely related hexa­aqua­cobalt(II) structures, see: Li et al. (2004 ▶); Pan et al. (2003 ▶). For closely related pyridinium structures, see: Al-Dajani, Abdallah et al. (2009 ▶, 2010 ▶); Al-Dajani, Salhin et al. (2009 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

(C5H8N3)2[Co(H2O)6](SO4)2·2H2O M = 615.47 Orthorhombic, a = 6.6219 (1) Å b = 14.4347 (2) Å c = 24.7590 (3) Å V = 2366.59 (6) Å3 Z = 4 Mo Kα radiation μ = 0.99 mm−1 T = 100 K 0.35 × 0.31 × 0.21 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.725, T max = 0.821 86569 measured reflections 6333 independent reflections 5758 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.064 S = 1.08 6333 reflections 224 parameters All H-atom parameters refined Δρmax = 0.60 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810026693/hb5536sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810026693/hb5536Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H8N3)2[Co(H2O)6](SO4)2·2H2OF(000) = 1284
Mr = 615.47Dx = 1.727 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9901 reflections
a = 6.6219 (1) Åθ = 3.5–37.6°
b = 14.4347 (2) ŵ = 0.99 mm1
c = 24.7590 (3) ÅT = 100 K
V = 2366.59 (6) Å3Block, red
Z = 40.35 × 0.31 × 0.21 mm
Bruker SMART APEXII CCD diffractometer6333 independent reflections
Radiation source: fine-focus sealed tube5758 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 37.7°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.725, Tmax = 0.821k = −24→24
86569 measured reflectionsl = −42→42
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064All H-atom parameters refined
S = 1.08w = 1/[σ2(Fo2) + (0.0322P)2 + 0.6554P] where P = (Fo2 + 2Fc2)/3
6333 reflections(Δ/σ)max = 0.001
224 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.00813 (3)
O1W0.60030 (8)0.62537 (4)0.46843 (2)0.01288 (8)
O2W0.37213 (8)0.57254 (4)0.56500 (2)0.01253 (8)
O3W0.23481 (8)0.51148 (4)0.45350 (2)0.01281 (9)
O4W0.50958 (8)0.83091 (4)0.53640 (2)0.01281 (9)
S10.86829 (2)0.696844 (10)0.616698 (6)0.00760 (3)
O10.93408 (8)0.79469 (3)0.62001 (2)0.01200 (8)
O20.64851 (8)0.69401 (4)0.60506 (2)0.01254 (8)
O30.97898 (8)0.64929 (4)0.57237 (2)0.01158 (8)
O40.90760 (9)0.65018 (4)0.66828 (2)0.01417 (9)
N10.89603 (9)0.85415 (4)0.72893 (2)0.00943 (8)
N20.97396 (10)0.72061 (4)0.77643 (3)0.01420 (10)
N30.82794 (10)0.97979 (4)0.67371 (2)0.01328 (10)
C10.91746 (10)0.81030 (4)0.77745 (2)0.00979 (9)
C20.88017 (10)0.86024 (5)0.82461 (3)0.01229 (10)
C30.82632 (11)0.95288 (5)0.82032 (3)0.01297 (10)
C40.80547 (11)0.99626 (5)0.77070 (3)0.01179 (10)
C50.84005 (9)0.94478 (4)0.72390 (2)0.00965 (9)
H1W10.542 (2)0.6492 (10)0.4413 (6)0.030 (4)*
H2W10.724 (2)0.6368 (10)0.4648 (6)0.028 (3)*
H1W20.451 (2)0.6080 (10)0.5781 (6)0.025 (3)*
H2W20.264 (2)0.5990 (10)0.5680 (6)0.030 (4)*
H1W30.160 (2)0.5580 (11)0.4558 (6)0.029 (4)*
H2W30.165 (2)0.4675 (11)0.4463 (6)0.028 (3)*
H1W40.559 (3)0.7850 (12)0.5544 (6)0.036 (4)*
H2W40.514 (2)0.8192 (13)0.5055 (6)0.032 (4)*
H1N10.923 (2)0.8224 (9)0.6993 (5)0.021 (3)*
H2N21.014 (2)0.6963 (10)0.8039 (6)0.023 (3)*
H1N30.836 (2)0.9442 (9)0.6464 (5)0.021 (3)*
H1N20.983 (2)0.6940 (10)0.7493 (6)0.023 (3)*
H2N30.769 (2)1.0311 (10)0.6695 (5)0.022 (3)*
H20.888 (2)0.8281 (9)0.8575 (5)0.024 (3)*
H30.794 (2)0.9854 (9)0.8525 (5)0.017 (3)*
H40.768 (2)1.0617 (9)0.7676 (5)0.021 (3)*
U11U22U33U12U13U23
Co10.00772 (5)0.00786 (5)0.00880 (5)−0.00035 (4)−0.00063 (4)0.00026 (3)
O1W0.01163 (19)0.0125 (2)0.0145 (2)−0.00216 (16)−0.00227 (17)0.00427 (15)
O2W0.01003 (19)0.0139 (2)0.01366 (19)−0.00017 (16)−0.00004 (16)−0.00345 (16)
O3W0.01056 (19)0.01071 (19)0.0172 (2)0.00053 (16)−0.00386 (17)−0.00187 (15)
O4W0.0138 (2)0.0137 (2)0.01087 (19)0.00064 (16)−0.00068 (16)−0.00023 (16)
S10.00845 (6)0.00744 (6)0.00691 (5)−0.00042 (4)0.00023 (4)−0.00030 (4)
O10.0154 (2)0.00811 (18)0.01252 (19)−0.00296 (16)0.00154 (17)−0.00110 (14)
O20.00834 (18)0.0135 (2)0.0158 (2)−0.00022 (15)−0.00093 (16)−0.00211 (16)
O30.01201 (19)0.01219 (19)0.01052 (18)0.00079 (15)0.00229 (15)−0.00298 (15)
O40.0201 (2)0.0137 (2)0.00873 (17)−0.00068 (18)−0.00182 (17)0.00294 (15)
N10.0103 (2)0.0097 (2)0.00826 (19)0.00011 (16)−0.00031 (16)−0.00037 (15)
N20.0180 (3)0.0110 (2)0.0136 (2)0.00237 (19)−0.0038 (2)0.00052 (18)
N30.0147 (2)0.0138 (2)0.0113 (2)0.00146 (19)−0.00063 (19)0.00307 (17)
C10.0089 (2)0.0109 (2)0.0096 (2)−0.00068 (18)−0.00122 (18)0.00055 (17)
C20.0127 (2)0.0153 (3)0.0089 (2)0.0001 (2)−0.00031 (19)−0.00021 (18)
C30.0119 (2)0.0157 (3)0.0113 (2)0.0000 (2)0.0004 (2)−0.00380 (19)
C40.0112 (2)0.0108 (2)0.0134 (2)0.00028 (19)0.0003 (2)−0.00217 (18)
C50.0080 (2)0.0101 (2)0.0109 (2)−0.00041 (18)−0.00031 (18)0.00074 (17)
Co1—O1Wi2.0801 (5)S1—O31.4875 (5)
Co1—O1W2.0801 (5)N1—C11.3652 (8)
Co1—O2Wi2.0985 (5)N1—C51.3654 (8)
Co1—O2W2.0985 (5)N1—H1N10.884 (13)
Co1—O3Wi2.1064 (5)N2—C11.3478 (9)
Co1—O3W2.1064 (5)N2—H2N20.810 (14)
O1W—H1W10.848 (16)N2—H1N20.776 (15)
O1W—H2W10.841 (16)N3—C51.3438 (8)
O2W—H1W20.799 (15)N3—H1N30.851 (14)
O2W—H2W20.817 (16)N3—H2N30.843 (15)
O3W—H1W30.836 (16)C1—C21.3942 (9)
O3W—H2W30.806 (16)C2—C31.3881 (10)
O4W—H1W40.863 (17)C2—H20.938 (13)
O4W—H2W40.784 (16)C3—C41.3859 (10)
S1—O41.4672 (5)C3—H30.949 (13)
S1—O11.4803 (5)C4—C51.3953 (9)
S1—O21.4842 (5)C4—H40.980 (13)
O1Wi—Co1—O1W180.0O4—S1—O3110.06 (3)
O1Wi—Co1—O2Wi89.02 (2)O1—S1—O3109.64 (3)
O1W—Co1—O2Wi90.98 (2)O2—S1—O3109.10 (3)
O1Wi—Co1—O2W90.98 (2)C1—N1—C5123.55 (5)
O1W—Co1—O2W89.02 (2)C1—N1—H1N1117.9 (9)
O2Wi—Co1—O2W180.0C5—N1—H1N1118.5 (9)
O1Wi—Co1—O3Wi89.56 (2)C1—N2—H2N2119.5 (10)
O1W—Co1—O3Wi90.44 (2)C1—N2—H1N2120.9 (11)
O2Wi—Co1—O3Wi92.50 (2)H2N2—N2—H1N2119.0 (15)
O2W—Co1—O3Wi87.50 (2)C5—N3—H1N3120.2 (9)
O1Wi—Co1—O3W90.44 (2)C5—N3—H2N3118.2 (9)
O1W—Co1—O3W89.56 (2)H1N3—N3—H2N3117.5 (13)
O2Wi—Co1—O3W87.50 (2)N2—C1—N1117.24 (6)
O2W—Co1—O3W92.50 (2)N2—C1—C2124.16 (6)
O3Wi—Co1—O3W180.0N1—C1—C2118.60 (6)
Co1—O1W—H1W1120.3 (10)C3—C2—C1118.66 (6)
Co1—O1W—H2W1121.4 (10)C3—C2—H2123.9 (8)
H1W1—O1W—H2W1106.3 (14)C1—C2—H2117.4 (8)
Co1—O2W—H1W2111.5 (11)C4—C3—C2121.91 (6)
Co1—O2W—H2W2131.1 (10)C4—C3—H3120.0 (8)
H1W2—O2W—H2W2103.8 (14)C2—C3—H3118.0 (8)
Co1—O3W—H1W3121.3 (10)C3—C4—C5118.63 (6)
Co1—O3W—H2W3122.5 (11)C3—C4—H4122.0 (8)
H1W3—O3W—H2W3108.0 (16)C5—C4—H4119.4 (8)
H1W4—O4W—H2W4109.0 (17)N3—C5—N1117.44 (6)
O4—S1—O1109.73 (3)N3—C5—C4123.90 (6)
O4—S1—O2109.29 (3)N1—C5—C4118.63 (6)
O1—S1—O2109.01 (3)
C5—N1—C1—N2−179.89 (6)C2—C3—C4—C5−0.05 (11)
C5—N1—C1—C20.09 (10)C1—N1—C5—N3178.90 (6)
N2—C1—C2—C3178.85 (7)C1—N1—C5—C40.99 (10)
N1—C1—C2—C3−1.13 (10)C3—C4—C5—N3−178.76 (7)
C1—C2—C3—C41.12 (11)C3—C4—C5—N1−0.99 (10)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O1ii0.848 (14)1.863 (15)2.7088 (7)175.4 (13)
O1W—H2W1···O4Wiii0.840 (13)1.948 (13)2.7853 (8)174.2 (13)
O2W—H1W2···O20.800 (14)1.923 (14)2.7217 (8)176.3 (14)
O2W—H2W2···O3iv0.815 (14)2.025 (13)2.8352 (8)172.7 (15)
O3W—H1W3···O4Wii0.836 (15)1.898 (15)2.7318 (8)175.1 (13)
O3W—H2W3···O3i0.805 (15)1.991 (15)2.7928 (8)173.6 (14)
O4W—H1W4···O20.863 (17)1.910 (17)2.7643 (8)169.9 (16)
O4W—H2W4···O3ii0.784 (15)1.994 (15)2.7157 (7)152.8 (18)
N1—H1N1···O10.883 (13)2.005 (12)2.8412 (7)157.6 (12)
N2—H2N2···O2v0.810 (15)2.424 (15)3.1769 (9)155.1 (13)
N3—H1N3···O10.851 (13)2.347 (13)3.0660 (7)142.6 (11)
N2—H1N2···O40.776 (15)2.162 (15)2.8977 (9)158.5 (14)
N3—H2N3···O4vi0.844 (14)2.079 (14)2.9155 (8)171.0 (12)
Table 1

Selected bond lengths (Å)

Co1—O1W2.0801 (5)
Co1—O2W2.0985 (5)
Co1—O3W2.1064 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O1i0.848 (14)1.863 (15)2.7088 (7)175.4 (13)
O1W—H2W1⋯O4Wii0.840 (13)1.948 (13)2.7853 (8)174.2 (13)
O2W—H1W2⋯O20.800 (14)1.923 (14)2.7217 (8)176.3 (14)
O2W—H2W2⋯O3iii0.815 (14)2.025 (13)2.8352 (8)172.7 (15)
O3W—H1W3⋯O4Wi0.836 (15)1.898 (15)2.7318 (8)175.1 (13)
O3W—H2W3⋯O3iv0.805 (15)1.991 (15)2.7928 (8)173.6 (14)
O4W—H1W4⋯O20.863 (17)1.910 (17)2.7643 (8)169.9 (16)
O4W—H2W4⋯O3i0.784 (15)1.994 (15)2.7157 (7)152.8 (18)
N1—H1N1⋯O10.883 (13)2.005 (12)2.8412 (7)157.6 (12)
N2—H2N2⋯O2v0.810 (15)2.424 (15)3.1769 (9)155.1 (13)
N3—H1N3⋯O10.851 (13)2.347 (13)3.0660 (7)142.6 (11)
N2—H1N2⋯O40.776 (15)2.162 (15)2.8977 (9)158.5 (14)
N3—H2N3⋯O4vi0.844 (14)2.079 (14)2.9155 (8)171.0 (12)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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