| Literature DB >> 21588023 |
Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Jia Hao Goh, Hoong-Kun Fun.
Abstract
In the organic cation of the title compound, C(13)H(20)N(3) (+)·Cl(-)·H(2)O, the two pyrrolidine rings adopt twisted conformations. The pyridine ring makes dihedral angles of 14.57 (6) and 23.96 (6)° with the mean planes of the pyrrolidine rings. In the crystal structure, pairs of bifurcated inter-molecular O-H⋯Cl hydrogen bonds link the water mol-ecules and chloride anions into an R(4) (4)(8) ring motif. Inter-molecular N-H⋯Cl, C-H⋯Cl and C-H⋯O hydrogen bonds further inter-connect these rings with the organic cations into a two-dimensional network parallel to the bc plane.Entities:
Year: 2010 PMID: 21588023 PMCID: PMC3007020 DOI: 10.1107/S160053681002427X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H20N3+·Cl−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9025 reflections |
| θ = 3.6–35.1° | |
| µ = 0.27 mm−1 | |
| β = 119.214 (2)° | Block, brown |
| 0.36 × 0.25 × 0.21 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 5073 independent reflections |
| Radiation source: fine-focus sealed tube | 4506 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 3.6° |
| Absorption correction: multi-scan ( | |
| 20960 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5073 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.85 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.19322 (2) | 0.62909 (2) | 0.66837 (2) | 0.01949 (8) | |
| N1 | 0.36262 (7) | 0.57142 (7) | 1.04747 (8) | 0.01531 (15) | |
| N2 | 0.14198 (7) | 0.52984 (6) | 0.90169 (8) | 0.01275 (14) | |
| H1N2 | 0.1409 | 0.5734 | 0.8446 | 0.015* | |
| N3 | −0.08202 (7) | 0.50501 (7) | 0.75519 (8) | 0.01540 (15) | |
| C1 | 0.34608 (9) | 0.68840 (8) | 1.01429 (10) | 0.01729 (17) | |
| H1A | 0.2653 | 0.7163 | 1.0090 | 0.021* | |
| H1B | 0.3446 | 0.7022 | 0.9295 | 0.021* | |
| C2 | 0.46810 (9) | 0.73903 (9) | 1.13225 (11) | 0.0226 (2) | |
| H2A | 0.4514 | 0.7568 | 1.2058 | 0.027* | |
| H2B | 0.4954 | 0.8045 | 1.1045 | 0.027* | |
| C3 | 0.57226 (10) | 0.64951 (9) | 1.17295 (12) | 0.0231 (2) | |
| H3A | 0.6087 | 0.6468 | 1.1121 | 0.028* | |
| H3B | 0.6437 | 0.6601 | 1.2644 | 0.028* | |
| C4 | 0.49368 (9) | 0.54686 (9) | 1.16178 (10) | 0.02016 (19) | |
| H4A | 0.5325 | 0.4835 | 1.1435 | 0.024* | |
| H4B | 0.4888 | 0.5344 | 1.2436 | 0.024* | |
| C5 | 0.26136 (9) | 0.50134 (7) | 1.01015 (9) | 0.01296 (16) | |
| C6 | 0.27123 (9) | 0.40293 (8) | 1.07522 (10) | 0.01685 (17) | |
| H6A | 0.3516 | 0.3802 | 1.1467 | 0.020* | |
| C7 | 0.15781 (10) | 0.33922 (8) | 1.03070 (10) | 0.01769 (18) | |
| H7A | 0.1637 | 0.2735 | 1.0740 | 0.021* | |
| C8 | 0.03737 (10) | 0.36996 (7) | 0.92503 (10) | 0.01668 (18) | |
| H8A | −0.0372 | 0.3266 | 0.8984 | 0.020* | |
| C9 | 0.02951 (8) | 0.46816 (7) | 0.85822 (9) | 0.01324 (16) | |
| C10 | −0.20146 (9) | 0.43731 (9) | 0.69091 (11) | 0.02049 (19) | |
| H10A | −0.2389 | 0.4269 | 0.7501 | 0.025* | |
| H10B | −0.1827 | 0.3667 | 0.6657 | 0.025* | |
| C11 | −0.29411 (10) | 0.50344 (10) | 0.56689 (11) | 0.0251 (2) | |
| H11A | −0.3857 | 0.4926 | 0.5440 | 0.030* | |
| H11B | −0.2836 | 0.4836 | 0.4900 | 0.030* | |
| C12 | −0.25148 (10) | 0.62099 (9) | 0.60917 (11) | 0.0217 (2) | |
| H12A | −0.2777 | 0.6675 | 0.5312 | 0.026* | |
| H12B | −0.2893 | 0.6492 | 0.6627 | 0.026* | |
| C13 | −0.10123 (9) | 0.61292 (8) | 0.69258 (10) | 0.01769 (18) | |
| H13A | −0.0603 | 0.6171 | 0.6359 | 0.021* | |
| H13B | −0.0654 | 0.6700 | 0.7601 | 0.021* | |
| O1W | 0.07681 (10) | 0.38244 (7) | 0.62242 (9) | 0.02792 (19) | |
| H1W1 | 0.0986 | 0.4542 | 0.6261 | 0.042* | |
| H2W1 | 0.0048 | 0.3828 | 0.5536 | 0.042* |
| Cl1 | 0.01614 (12) | 0.02374 (14) | 0.01981 (13) | 0.00041 (7) | 0.00973 (10) | 0.00133 (8) |
| N1 | 0.0105 (3) | 0.0137 (3) | 0.0163 (3) | −0.0004 (2) | 0.0023 (3) | 0.0012 (3) |
| N2 | 0.0111 (3) | 0.0121 (3) | 0.0131 (3) | −0.0003 (2) | 0.0044 (3) | 0.0008 (2) |
| N3 | 0.0101 (3) | 0.0150 (3) | 0.0172 (3) | −0.0008 (2) | 0.0036 (3) | −0.0021 (3) |
| C1 | 0.0140 (4) | 0.0132 (4) | 0.0203 (4) | −0.0011 (3) | 0.0050 (3) | −0.0005 (3) |
| C2 | 0.0140 (4) | 0.0192 (4) | 0.0281 (5) | −0.0034 (3) | 0.0054 (4) | −0.0073 (4) |
| C3 | 0.0116 (4) | 0.0236 (5) | 0.0275 (5) | −0.0019 (3) | 0.0045 (4) | −0.0028 (4) |
| C4 | 0.0111 (4) | 0.0231 (5) | 0.0189 (4) | 0.0012 (3) | 0.0016 (3) | 0.0022 (3) |
| C5 | 0.0115 (3) | 0.0134 (4) | 0.0129 (4) | 0.0006 (3) | 0.0051 (3) | −0.0003 (3) |
| C6 | 0.0167 (4) | 0.0154 (4) | 0.0165 (4) | 0.0017 (3) | 0.0066 (3) | 0.0032 (3) |
| C7 | 0.0207 (4) | 0.0133 (4) | 0.0207 (4) | 0.0007 (3) | 0.0114 (3) | 0.0023 (3) |
| C8 | 0.0171 (4) | 0.0133 (4) | 0.0208 (4) | −0.0020 (3) | 0.0101 (3) | −0.0009 (3) |
| C9 | 0.0116 (3) | 0.0128 (4) | 0.0150 (4) | −0.0011 (3) | 0.0063 (3) | −0.0031 (3) |
| C10 | 0.0126 (4) | 0.0214 (4) | 0.0242 (5) | −0.0043 (3) | 0.0063 (3) | −0.0079 (4) |
| C11 | 0.0119 (4) | 0.0369 (6) | 0.0209 (5) | −0.0010 (4) | 0.0037 (3) | −0.0053 (4) |
| C12 | 0.0125 (4) | 0.0310 (5) | 0.0200 (5) | 0.0052 (3) | 0.0066 (3) | 0.0054 (4) |
| C13 | 0.0124 (4) | 0.0204 (4) | 0.0189 (4) | 0.0022 (3) | 0.0066 (3) | 0.0034 (3) |
| O1W | 0.0333 (4) | 0.0220 (4) | 0.0218 (4) | 0.0079 (3) | 0.0082 (3) | −0.0016 (3) |
| N1—C5 | 1.3444 (11) | C5—C6 | 1.3914 (13) |
| N1—C4 | 1.4681 (12) | C6—C7 | 1.3935 (14) |
| N1—C1 | 1.4729 (13) | C6—H6A | 0.9300 |
| N2—C9 | 1.3724 (11) | C7—C8 | 1.3759 (14) |
| N2—C5 | 1.3740 (11) | C7—H7A | 0.9300 |
| N2—H1N2 | 0.8360 | C8—C9 | 1.4034 (13) |
| N3—C9 | 1.3289 (11) | C8—H8A | 0.9300 |
| N3—C10 | 1.4659 (12) | C10—C11 | 1.5229 (16) |
| N3—C13 | 1.4680 (13) | C10—H10A | 0.9700 |
| C1—C2 | 1.5261 (13) | C10—H10B | 0.9700 |
| C1—H1A | 0.9700 | C11—C12 | 1.5244 (17) |
| C1—H1B | 0.9700 | C11—H11A | 0.9700 |
| C2—C3 | 1.5263 (15) | C11—H11B | 0.9700 |
| C2—H2A | 0.9700 | C12—C13 | 1.5241 (14) |
| C2—H2B | 0.9700 | C12—H12A | 0.9700 |
| C3—C4 | 1.5223 (15) | C12—H12B | 0.9700 |
| C3—H3A | 0.9700 | C13—H13A | 0.9700 |
| C3—H3B | 0.9700 | C13—H13B | 0.9700 |
| C4—H4A | 0.9700 | O1W—H1W1 | 0.9117 |
| C4—H4B | 0.9700 | O1W—H2W1 | 0.8189 |
| C5—N1—C4 | 120.85 (8) | C5—C6—H6A | 120.8 |
| C5—N1—C1 | 123.94 (7) | C7—C6—H6A | 120.8 |
| C4—N1—C1 | 112.06 (7) | C8—C7—C6 | 122.44 (9) |
| C9—N2—C5 | 122.97 (8) | C8—C7—H7A | 118.8 |
| C9—N2—H1N2 | 114.9 | C6—C7—H7A | 118.8 |
| C5—N2—H1N2 | 119.1 | C7—C8—C9 | 118.56 (9) |
| C9—N3—C10 | 121.35 (8) | C7—C8—H8A | 120.7 |
| C9—N3—C13 | 125.88 (8) | C9—C8—H8A | 120.7 |
| C10—N3—C13 | 112.77 (8) | N3—C9—N2 | 118.17 (8) |
| N1—C1—C2 | 102.89 (8) | N3—C9—C8 | 123.19 (8) |
| N1—C1—H1A | 111.2 | N2—C9—C8 | 118.64 (8) |
| C2—C1—H1A | 111.2 | N3—C10—C11 | 103.05 (9) |
| N1—C1—H1B | 111.2 | N3—C10—H10A | 111.2 |
| C2—C1—H1B | 111.2 | C11—C10—H10A | 111.2 |
| H1A—C1—H1B | 109.1 | N3—C10—H10B | 111.2 |
| C1—C2—C3 | 103.21 (8) | C11—C10—H10B | 111.2 |
| C1—C2—H2A | 111.1 | H10A—C10—H10B | 109.1 |
| C3—C2—H2A | 111.1 | C10—C11—C12 | 103.85 (8) |
| C1—C2—H2B | 111.1 | C10—C11—H11A | 111.0 |
| C3—C2—H2B | 111.1 | C12—C11—H11A | 111.0 |
| H2A—C2—H2B | 109.1 | C10—C11—H11B | 111.0 |
| C4—C3—C2 | 102.66 (8) | C12—C11—H11B | 111.0 |
| C4—C3—H3A | 111.2 | H11A—C11—H11B | 109.0 |
| C2—C3—H3A | 111.2 | C13—C12—C11 | 103.30 (8) |
| C4—C3—H3B | 111.2 | C13—C12—H12A | 111.1 |
| C2—C3—H3B | 111.2 | C11—C12—H12A | 111.1 |
| H3A—C3—H3B | 109.1 | C13—C12—H12B | 111.1 |
| N1—C4—C3 | 102.77 (8) | C11—C12—H12B | 111.1 |
| N1—C4—H4A | 111.2 | H12A—C12—H12B | 109.1 |
| C3—C4—H4A | 111.2 | N3—C13—C12 | 102.53 (8) |
| N1—C4—H4B | 111.2 | N3—C13—H13A | 111.3 |
| C3—C4—H4B | 111.2 | C12—C13—H13A | 111.3 |
| H4A—C4—H4B | 109.1 | N3—C13—H13B | 111.3 |
| N1—C5—N2 | 117.40 (8) | C12—C13—H13B | 111.3 |
| N1—C5—C6 | 123.70 (8) | H13A—C13—H13B | 109.2 |
| N2—C5—C6 | 118.90 (8) | H1W1—O1W—H2W1 | 99.6 |
| C5—C6—C7 | 118.41 (9) | ||
| C5—N1—C1—C2 | 150.43 (9) | C6—C7—C8—C9 | 1.27 (15) |
| C4—N1—C1—C2 | −9.59 (11) | C10—N3—C9—N2 | 171.36 (8) |
| N1—C1—C2—C3 | 30.83 (11) | C13—N3—C9—N2 | −8.05 (14) |
| C1—C2—C3—C4 | −40.78 (11) | C10—N3—C9—C8 | −9.15 (14) |
| C5—N1—C4—C3 | −176.31 (9) | C13—N3—C9—C8 | 171.44 (9) |
| C1—N1—C4—C3 | −15.59 (11) | C5—N2—C9—N3 | 177.66 (8) |
| C2—C3—C4—N1 | 34.27 (11) | C5—N2—C9—C8 | −1.85 (13) |
| C4—N1—C5—N2 | −179.62 (8) | C7—C8—C9—N3 | −179.98 (9) |
| C1—N1—C5—N2 | 22.02 (13) | C7—C8—C9—N2 | −0.49 (14) |
| C4—N1—C5—C6 | 0.56 (14) | C9—N3—C10—C11 | −170.91 (9) |
| C1—N1—C5—C6 | −157.79 (9) | C13—N3—C10—C11 | 8.57 (11) |
| C9—N2—C5—N1 | −176.46 (8) | N3—C10—C11—C12 | −28.80 (10) |
| C9—N2—C5—C6 | 3.37 (13) | C10—C11—C12—C13 | 38.50 (11) |
| N1—C5—C6—C7 | 177.33 (9) | C9—N3—C13—C12 | −165.45 (9) |
| N2—C5—C6—C7 | −2.48 (14) | C10—N3—C13—C12 | 15.10 (11) |
| C5—C6—C7—C8 | 0.23 (15) | C11—C12—C13—N3 | −32.44 (10) |
| H··· | ||||
| N2—H1N2···Cl1 | 0.84 | 2.45 | 3.2246 (10) | 153 |
| O1W—H1W1···Cl1 | 0.91 | 2.35 | 3.2502 (11) | 169 |
| O1W—H2W1···Cl1i | 0.82 | 2.45 | 3.2594 (11) | 171 |
| C1—H1B···Cl1 | 0.97 | 2.76 | 3.5100 (11) | 135 |
| C7—H7A···O1Wii | 0.93 | 2.35 | 3.2122 (15) | 154 |
| C13—H13A···Cl1 | 0.97 | 2.78 | 3.5555 (13) | 138 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.84 | 2.45 | 3.2246 (10) | 153 |
| O1 | 0.91 | 2.35 | 3.2502 (11) | 169 |
| O1 | 0.82 | 2.45 | 3.2594 (11) | 171 |
| C1—H1 | 0.97 | 2.76 | 3.5100 (11) | 135 |
| C7—H7 | 0.93 | 2.35 | 3.2122 (15) | 154 |
| C13—H13 | 0.97 | 2.78 | 3.5555 (13) | 138 |
Symmetry codes: (i) ; (ii) .