Literature DB >> 21588023

2,6-Di(pyrrolidin-1-yl)pyridinium chloride monohydrate.

Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

In the organic cation of the title compound, C(13)H(20)N(3) (+)·Cl(-)·H(2)O, the two pyrrolidine rings adopt twisted conformations. The pyridine ring makes dihedral angles of 14.57 (6) and 23.96 (6)° with the mean planes of the pyrrolidine rings. In the crystal structure, pairs of bifurcated inter-molecular O-H⋯Cl hydrogen bonds link the water mol-ecules and chloride anions into an R(4) (4)(8) ring motif. Inter-molecular N-H⋯Cl, C-H⋯Cl and C-H⋯O hydrogen bonds further inter-connect these rings with the organic cations into a two-dimensional network parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21588023      PMCID: PMC3007020          DOI: 10.1107/S160053681002427X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of the title compound, see: Cornell et al. (2003 ▶); Fetzner (1998 ▶); Padoley et al. (2008 ▶); Xue & Warshawsky (2005 ▶); Zhu et al. (2003 ▶). For puckering analysis and ring conformations, see: Cremer & Pople (1975 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Al-Dajani et al. (2009 ▶); Rubin-Preminger & Englert (2007 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H20N3 +·Cl−·H2O M = 271.79 Monoclinic, a = 11.5728 (15) Å b = 12.2724 (16) Å c = 11.3622 (16) Å β = 119.214 (2)° V = 1408.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.36 × 0.25 × 0.21 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.911, T max = 0.947 20960 measured reflections 5073 independent reflections 4506 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.129 S = 1.26 5073 reflections 163 parameters H-atom parameters constrained Δρmax = 0.85 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002427X/is2565sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002427X/is2565Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H20N3+·Cl·H2OF(000) = 584
Mr = 271.79Dx = 1.282 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9025 reflections
a = 11.5728 (15) Åθ = 3.6–35.1°
b = 12.2724 (16) ŵ = 0.27 mm1
c = 11.3622 (16) ÅT = 100 K
β = 119.214 (2)°Block, brown
V = 1408.5 (3) Å30.36 × 0.25 × 0.21 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer5073 independent reflections
Radiation source: fine-focus sealed tube4506 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 32.5°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.911, Tmax = 0.947k = −18→18
20960 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.26w = 1/[σ2(Fo2) + (0.0709P)2 + 0.155P] where P = (Fo2 + 2Fc2)/3
5073 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −0.47 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.19322 (2)0.62909 (2)0.66837 (2)0.01949 (8)
N10.36262 (7)0.57142 (7)1.04747 (8)0.01531 (15)
N20.14198 (7)0.52984 (6)0.90169 (8)0.01275 (14)
H1N20.14090.57340.84460.015*
N3−0.08202 (7)0.50501 (7)0.75519 (8)0.01540 (15)
C10.34608 (9)0.68840 (8)1.01429 (10)0.01729 (17)
H1A0.26530.71631.00900.021*
H1B0.34460.70220.92950.021*
C20.46810 (9)0.73903 (9)1.13225 (11)0.0226 (2)
H2A0.45140.75681.20580.027*
H2B0.49540.80451.10450.027*
C30.57226 (10)0.64951 (9)1.17295 (12)0.0231 (2)
H3A0.60870.64681.11210.028*
H3B0.64370.66011.26440.028*
C40.49368 (9)0.54686 (9)1.16178 (10)0.02016 (19)
H4A0.53250.48351.14350.024*
H4B0.48880.53441.24360.024*
C50.26136 (9)0.50134 (7)1.01015 (9)0.01296 (16)
C60.27123 (9)0.40293 (8)1.07522 (10)0.01685 (17)
H6A0.35160.38021.14670.020*
C70.15781 (10)0.33922 (8)1.03070 (10)0.01769 (18)
H7A0.16370.27351.07400.021*
C80.03737 (10)0.36996 (7)0.92503 (10)0.01668 (18)
H8A−0.03720.32660.89840.020*
C90.02951 (8)0.46816 (7)0.85822 (9)0.01324 (16)
C10−0.20146 (9)0.43731 (9)0.69091 (11)0.02049 (19)
H10A−0.23890.42690.75010.025*
H10B−0.18270.36670.66570.025*
C11−0.29411 (10)0.50344 (10)0.56689 (11)0.0251 (2)
H11A−0.38570.49260.54400.030*
H11B−0.28360.48360.49000.030*
C12−0.25148 (10)0.62099 (9)0.60917 (11)0.0217 (2)
H12A−0.27770.66750.53120.026*
H12B−0.28930.64920.66270.026*
C13−0.10123 (9)0.61292 (8)0.69258 (10)0.01769 (18)
H13A−0.06030.61710.63590.021*
H13B−0.06540.67000.76010.021*
O1W0.07681 (10)0.38244 (7)0.62242 (9)0.02792 (19)
H1W10.09860.45420.62610.042*
H2W10.00480.38280.55360.042*
U11U22U33U12U13U23
Cl10.01614 (12)0.02374 (14)0.01981 (13)0.00041 (7)0.00973 (10)0.00133 (8)
N10.0105 (3)0.0137 (3)0.0163 (3)−0.0004 (2)0.0023 (3)0.0012 (3)
N20.0111 (3)0.0121 (3)0.0131 (3)−0.0003 (2)0.0044 (3)0.0008 (2)
N30.0101 (3)0.0150 (3)0.0172 (3)−0.0008 (2)0.0036 (3)−0.0021 (3)
C10.0140 (4)0.0132 (4)0.0203 (4)−0.0011 (3)0.0050 (3)−0.0005 (3)
C20.0140 (4)0.0192 (4)0.0281 (5)−0.0034 (3)0.0054 (4)−0.0073 (4)
C30.0116 (4)0.0236 (5)0.0275 (5)−0.0019 (3)0.0045 (4)−0.0028 (4)
C40.0111 (4)0.0231 (5)0.0189 (4)0.0012 (3)0.0016 (3)0.0022 (3)
C50.0115 (3)0.0134 (4)0.0129 (4)0.0006 (3)0.0051 (3)−0.0003 (3)
C60.0167 (4)0.0154 (4)0.0165 (4)0.0017 (3)0.0066 (3)0.0032 (3)
C70.0207 (4)0.0133 (4)0.0207 (4)0.0007 (3)0.0114 (3)0.0023 (3)
C80.0171 (4)0.0133 (4)0.0208 (4)−0.0020 (3)0.0101 (3)−0.0009 (3)
C90.0116 (3)0.0128 (4)0.0150 (4)−0.0011 (3)0.0063 (3)−0.0031 (3)
C100.0126 (4)0.0214 (4)0.0242 (5)−0.0043 (3)0.0063 (3)−0.0079 (4)
C110.0119 (4)0.0369 (6)0.0209 (5)−0.0010 (4)0.0037 (3)−0.0053 (4)
C120.0125 (4)0.0310 (5)0.0200 (5)0.0052 (3)0.0066 (3)0.0054 (4)
C130.0124 (4)0.0204 (4)0.0189 (4)0.0022 (3)0.0066 (3)0.0034 (3)
O1W0.0333 (4)0.0220 (4)0.0218 (4)0.0079 (3)0.0082 (3)−0.0016 (3)
N1—C51.3444 (11)C5—C61.3914 (13)
N1—C41.4681 (12)C6—C71.3935 (14)
N1—C11.4729 (13)C6—H6A0.9300
N2—C91.3724 (11)C7—C81.3759 (14)
N2—C51.3740 (11)C7—H7A0.9300
N2—H1N20.8360C8—C91.4034 (13)
N3—C91.3289 (11)C8—H8A0.9300
N3—C101.4659 (12)C10—C111.5229 (16)
N3—C131.4680 (13)C10—H10A0.9700
C1—C21.5261 (13)C10—H10B0.9700
C1—H1A0.9700C11—C121.5244 (17)
C1—H1B0.9700C11—H11A0.9700
C2—C31.5263 (15)C11—H11B0.9700
C2—H2A0.9700C12—C131.5241 (14)
C2—H2B0.9700C12—H12A0.9700
C3—C41.5223 (15)C12—H12B0.9700
C3—H3A0.9700C13—H13A0.9700
C3—H3B0.9700C13—H13B0.9700
C4—H4A0.9700O1W—H1W10.9117
C4—H4B0.9700O1W—H2W10.8189
C5—N1—C4120.85 (8)C5—C6—H6A120.8
C5—N1—C1123.94 (7)C7—C6—H6A120.8
C4—N1—C1112.06 (7)C8—C7—C6122.44 (9)
C9—N2—C5122.97 (8)C8—C7—H7A118.8
C9—N2—H1N2114.9C6—C7—H7A118.8
C5—N2—H1N2119.1C7—C8—C9118.56 (9)
C9—N3—C10121.35 (8)C7—C8—H8A120.7
C9—N3—C13125.88 (8)C9—C8—H8A120.7
C10—N3—C13112.77 (8)N3—C9—N2118.17 (8)
N1—C1—C2102.89 (8)N3—C9—C8123.19 (8)
N1—C1—H1A111.2N2—C9—C8118.64 (8)
C2—C1—H1A111.2N3—C10—C11103.05 (9)
N1—C1—H1B111.2N3—C10—H10A111.2
C2—C1—H1B111.2C11—C10—H10A111.2
H1A—C1—H1B109.1N3—C10—H10B111.2
C1—C2—C3103.21 (8)C11—C10—H10B111.2
C1—C2—H2A111.1H10A—C10—H10B109.1
C3—C2—H2A111.1C10—C11—C12103.85 (8)
C1—C2—H2B111.1C10—C11—H11A111.0
C3—C2—H2B111.1C12—C11—H11A111.0
H2A—C2—H2B109.1C10—C11—H11B111.0
C4—C3—C2102.66 (8)C12—C11—H11B111.0
C4—C3—H3A111.2H11A—C11—H11B109.0
C2—C3—H3A111.2C13—C12—C11103.30 (8)
C4—C3—H3B111.2C13—C12—H12A111.1
C2—C3—H3B111.2C11—C12—H12A111.1
H3A—C3—H3B109.1C13—C12—H12B111.1
N1—C4—C3102.77 (8)C11—C12—H12B111.1
N1—C4—H4A111.2H12A—C12—H12B109.1
C3—C4—H4A111.2N3—C13—C12102.53 (8)
N1—C4—H4B111.2N3—C13—H13A111.3
C3—C4—H4B111.2C12—C13—H13A111.3
H4A—C4—H4B109.1N3—C13—H13B111.3
N1—C5—N2117.40 (8)C12—C13—H13B111.3
N1—C5—C6123.70 (8)H13A—C13—H13B109.2
N2—C5—C6118.90 (8)H1W1—O1W—H2W199.6
C5—C6—C7118.41 (9)
C5—N1—C1—C2150.43 (9)C6—C7—C8—C91.27 (15)
C4—N1—C1—C2−9.59 (11)C10—N3—C9—N2171.36 (8)
N1—C1—C2—C330.83 (11)C13—N3—C9—N2−8.05 (14)
C1—C2—C3—C4−40.78 (11)C10—N3—C9—C8−9.15 (14)
C5—N1—C4—C3−176.31 (9)C13—N3—C9—C8171.44 (9)
C1—N1—C4—C3−15.59 (11)C5—N2—C9—N3177.66 (8)
C2—C3—C4—N134.27 (11)C5—N2—C9—C8−1.85 (13)
C4—N1—C5—N2−179.62 (8)C7—C8—C9—N3−179.98 (9)
C1—N1—C5—N222.02 (13)C7—C8—C9—N2−0.49 (14)
C4—N1—C5—C60.56 (14)C9—N3—C10—C11−170.91 (9)
C1—N1—C5—C6−157.79 (9)C13—N3—C10—C118.57 (11)
C9—N2—C5—N1−176.46 (8)N3—C10—C11—C12−28.80 (10)
C9—N2—C5—C63.37 (13)C10—C11—C12—C1338.50 (11)
N1—C5—C6—C7177.33 (9)C9—N3—C13—C12−165.45 (9)
N2—C5—C6—C7−2.48 (14)C10—N3—C13—C1215.10 (11)
C5—C6—C7—C80.23 (15)C11—C12—C13—N3−32.44 (10)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···Cl10.842.453.2246 (10)153
O1W—H1W1···Cl10.912.353.2502 (11)169
O1W—H2W1···Cl1i0.822.453.2594 (11)171
C1—H1B···Cl10.972.763.5100 (11)135
C7—H7A···O1Wii0.932.353.2122 (15)154
C13—H13A···Cl10.972.783.5555 (13)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯Cl10.842.453.2246 (10)153
O1W—H1W1⋯Cl10.912.353.2502 (11)169
O1W—H2W1⋯Cl1i0.822.453.2594 (11)171
C1—H1B⋯Cl10.972.763.5100 (11)135
C7—H7A⋯O1Wii0.932.353.2122 (15)154
C13—H13A⋯Cl10.972.783.5555 (13)138

Symmetry codes: (i) ; (ii) .

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