Literature DB >> 21588071

3-(4-Fluoro-phenyl-sulfin-yl)-5-iodo-2-methyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(15)H(10)FIO(2)S, the O atom and the 4-fluoro-phenyl group of the 4-fluoro-phenyl-sulfinyl substituent are located on opposite sides of the plane through the benzofuran fragment; the 4-fluoro-phenyl ring is nearly perpendicular to this plane, making a dihedral angle of 83.37 (7)°. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen bonds and an I⋯O inter-action [I⋯O = 3.255 (2) Å]. The crystal structure also exhibits inter-molecular C-F⋯π inter-actions [3.068 (2) Å], and aromatic π-π inter-actions between the furan and benzene rings of neighbouring benzofuran fragments [centroid-centroid distance = 3.636 (2) Å].

Entities:  

Year:  2010        PMID: 21588071      PMCID: PMC3006988          DOI: 10.1107/S1600536810024931

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 3-(4-fluoro­phenyl­sulfin­yl)-2-methyl-1-benzofuran derivatives, see: Choi et al. (2010 ▶). For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C15H10FIO2S M = 400.19 Monoclinic, a = 13.1665 (4) Å b = 11.4338 (4) Å c = 9.9296 (3) Å β = 107.181 (1)° V = 1428.13 (8) Å3 Z = 4 Mo Kα radiation μ = 2.40 mm−1 T = 173 K 0.27 × 0.24 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.565, T max = 0.648 12825 measured reflections 3297 independent reflections 2990 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.11 3297 reflections 182 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −1.56 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024931/cs2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024931/cs2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10FIO2SF(000) = 776
Mr = 400.19Dx = 1.861 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8763 reflections
a = 13.1665 (4) Åθ = 2.4–27.6°
b = 11.4338 (4) ŵ = 2.40 mm1
c = 9.9296 (3) ÅT = 173 K
β = 107.181 (1)°Block, colourless
V = 1428.13 (8) Å30.27 × 0.24 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3297 independent reflections
Radiation source: rotating anode2990 reflections with I > 2σ(I)
graphite multilayerRint = 0.031
Detector resolution: 10.0 pixels mm-1θmax = 27.6°, θmin = 1.6°
φ and ω scansh = −15→17
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −14→14
Tmin = 0.565, Tmax = 0.648l = −12→12
12825 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: difference Fourier map
wR(F2) = 0.077H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0381P)2 + 1.2193P] where P = (Fo2 + 2Fc2)/3
3297 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −1.56 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.774810 (15)0.162106 (16)0.53507 (2)0.03259 (8)
S0.70499 (5)0.67499 (6)0.22747 (6)0.02368 (14)
F0.31812 (15)0.49689 (19)0.3339 (2)0.0480 (5)
O10.94047 (15)0.67042 (15)0.57609 (19)0.0249 (4)
O20.71831 (16)0.60325 (19)0.10757 (19)0.0318 (4)
C10.8028 (2)0.6377 (2)0.3837 (2)0.0213 (5)
C20.82677 (18)0.5281 (2)0.4598 (2)0.0195 (5)
C30.78672 (19)0.4142 (2)0.4425 (2)0.0219 (5)
H30.73090.39310.36430.026*
C40.8338 (2)0.3340 (2)0.5469 (3)0.0233 (5)
C50.9195 (2)0.3625 (2)0.6643 (3)0.0263 (5)
H50.94880.30580.73180.032*
C60.9608 (2)0.4746 (2)0.6804 (3)0.0259 (5)
H61.01840.49510.75670.031*
C70.91229 (19)0.5544 (2)0.5777 (2)0.0214 (5)
C80.8732 (2)0.7187 (2)0.4571 (3)0.0229 (5)
C90.8903 (2)0.8441 (2)0.4345 (3)0.0292 (6)
H9A0.84510.86750.34360.044*
H9B0.96320.85670.43870.044*
H9C0.87350.88960.50640.044*
C100.59180 (19)0.6152 (2)0.2691 (2)0.0226 (5)
C110.5564 (2)0.6657 (2)0.3746 (3)0.0298 (6)
H110.59450.72630.42930.036*
C120.4639 (2)0.6250 (3)0.3973 (3)0.0330 (6)
H120.43930.65700.46790.040*
C130.4092 (2)0.5362 (3)0.3133 (3)0.0310 (6)
C140.4427 (2)0.4850 (3)0.2094 (3)0.0315 (6)
H140.40390.42470.15490.038*
C150.5360 (2)0.5251 (2)0.1870 (3)0.0267 (5)
H150.56070.49160.11730.032*
U11U22U33U12U13U23
I0.03251 (12)0.02096 (12)0.04268 (13)0.00056 (6)0.00859 (9)0.00097 (7)
S0.0267 (3)0.0237 (3)0.0189 (3)0.0016 (2)0.0038 (2)0.0032 (2)
F0.0320 (9)0.0613 (13)0.0562 (11)−0.0066 (9)0.0216 (8)−0.0055 (10)
O10.0236 (9)0.0244 (10)0.0240 (8)−0.0017 (7)0.0031 (7)−0.0028 (7)
O20.0364 (10)0.0411 (12)0.0203 (8)−0.0014 (9)0.0122 (8)−0.0030 (8)
C10.0214 (11)0.0211 (12)0.0208 (11)0.0004 (9)0.0056 (9)0.0009 (9)
C20.0191 (11)0.0211 (12)0.0182 (10)0.0021 (9)0.0055 (8)0.0003 (9)
C30.0219 (11)0.0216 (12)0.0208 (11)0.0012 (9)0.0043 (9)−0.0012 (9)
C40.0250 (12)0.0193 (13)0.0258 (12)0.0005 (9)0.0079 (10)−0.0022 (9)
C50.0293 (13)0.0265 (13)0.0215 (11)0.0076 (11)0.0050 (10)0.0024 (10)
C60.0243 (12)0.0286 (14)0.0206 (11)0.0034 (10)0.0004 (9)−0.0028 (10)
C70.0206 (11)0.0230 (12)0.0207 (10)0.0009 (9)0.0064 (9)−0.0027 (9)
C80.0231 (12)0.0247 (13)0.0220 (11)0.0013 (10)0.0085 (9)−0.0013 (9)
C90.0294 (14)0.0238 (14)0.0353 (14)−0.0034 (10)0.0111 (11)−0.0010 (10)
C100.0234 (12)0.0233 (13)0.0183 (10)0.0050 (10)0.0017 (9)0.0027 (9)
C110.0339 (15)0.0285 (15)0.0256 (12)0.0020 (11)0.0067 (11)−0.0051 (10)
C120.0354 (15)0.0368 (16)0.0295 (13)0.0068 (13)0.0138 (11)−0.0024 (12)
C130.0221 (12)0.0380 (16)0.0324 (13)0.0038 (11)0.0074 (10)0.0035 (12)
C140.0272 (13)0.0327 (15)0.0319 (13)−0.0027 (11)0.0045 (11)−0.0071 (11)
C150.0260 (12)0.0295 (14)0.0225 (11)0.0034 (10)0.0039 (10)−0.0049 (10)
I—C42.104 (2)C6—C71.376 (4)
I—O2i3.255 (2)C6—H60.9300
S—O21.4981 (19)C8—C91.478 (4)
S—C11.751 (2)C9—H9A0.9600
S—C101.795 (3)C9—H9B0.9600
F—C131.351 (3)C9—H9C0.9600
O1—C81.366 (3)C10—C151.383 (4)
O1—C71.379 (3)C10—C111.391 (4)
C1—C81.360 (4)C11—C121.383 (4)
C1—C21.449 (3)C11—H110.9300
C2—C31.396 (3)C12—C131.375 (4)
C2—C71.396 (3)C12—H120.9300
C3—C41.386 (3)C13—C141.368 (4)
C3—H30.9300C14—C151.389 (4)
C4—C51.401 (4)C14—H140.9300
C5—C61.383 (4)C15—H150.9300
C5—H50.9300
C4—I—O2i164.42 (8)C1—C8—C9133.5 (2)
O2—S—C1110.03 (12)O1—C8—C9115.8 (2)
O2—S—C10105.95 (12)C8—C9—H9A109.5
C1—S—C1098.44 (11)C8—C9—H9B109.5
C8—O1—C7106.94 (19)H9A—C9—H9B109.5
C8—C1—C2107.5 (2)C8—C9—H9C109.5
C8—C1—S121.0 (2)H9A—C9—H9C109.5
C2—C1—S131.48 (19)H9B—C9—H9C109.5
C3—C2—C7119.1 (2)C15—C10—C11121.0 (3)
C3—C2—C1136.5 (2)C15—C10—S118.73 (19)
C7—C2—C1104.4 (2)C11—C10—S120.1 (2)
C4—C3—C2117.1 (2)C12—C11—C10119.3 (3)
C4—C3—H3121.4C12—C11—H11120.3
C2—C3—H3121.4C10—C11—H11120.3
C3—C4—C5122.8 (2)C13—C12—C11118.6 (3)
C3—C4—I120.02 (19)C13—C12—H12120.7
C5—C4—I117.21 (19)C11—C12—H12120.7
C6—C5—C4120.3 (2)F—C13—C14118.1 (3)
C6—C5—H5119.9F—C13—C12118.9 (3)
C4—C5—H5119.9C14—C13—C12123.0 (3)
C7—C6—C5116.6 (2)C13—C14—C15118.5 (3)
C7—C6—H6121.7C13—C14—H14120.8
C5—C6—H6121.7C15—C14—H14120.8
C6—C7—O1125.4 (2)C10—C15—C14119.5 (2)
C6—C7—C2124.1 (2)C10—C15—H15120.2
O1—C7—C2110.5 (2)C14—C15—H15120.2
C1—C8—O1110.7 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1ii0.932.553.472 (3)170
C9—H9C···O2iii0.962.533.277 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.932.553.472 (3)170
C9—H9C⋯O2ii0.962.533.277 (3)135

Symmetry codes: (i) ; (ii) .

  9 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

5.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

6.  3-(4-Fluoro-phenyl-sulfin-yl)-2,5,7-trimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

7.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

8.  3-(4-Fluoro-phenyl-sulfin-yl)-2,5-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

9.  3-(4-Fluoro-phenyl-sulfin-yl)-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-10
  9 in total
  3 in total

1.  3-(4-Fluoro-phenyl-sulfin-yl)-5-iodo-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  5-Bromo-3-(4-fluoro-phenyl-sulfin-yl)-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

3.  5-Iodo-2-methyl-3-(4-methyl-phenyl-sulfin-yl)-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  3 in total

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