Literature DB >> 21587989

2-[(2-Hy-droxy-4-meth-oxy-benzyl-idene)aza-nium-yl]benzoate monohydrate.

Zhi-Xi Hang, Bo Dong, Xing-Wen Wang.   

Abstract

In the title compound, C(15)H(13)NO(4)·H(2)O, the Schiff base exists in a zwitterionic form and a bifurcated intra-molecular N-H⋯(O,O) hydrogen bond generates two S(6) rings. The dihedral angle between the two benzene rings is 25.8 (2)°. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587989      PMCID: PMC3006953          DOI: 10.1107/S1600536810023949

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related compound and background references to Schiff bases, see: Hang (2010 ▶). For related structures, see: Alpaslan et al. (2010a ▶,b ▶); Aritake et al. (2010 ▶); Bahron et al. (2010 ▶).

Experimental

Crystal data

C15H13NO4·H2O M = 289.28 Triclinic, a = 8.7240 (5) Å b = 8.9252 (4) Å c = 10.7967 (5) Å α = 111.312 (2)° β = 93.084 (3)° γ = 117.500 (2)° V = 669.24 (6) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.30 × 0.28 × 0.28 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.970 4045 measured reflections 2810 independent reflections 1992 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.122 S = 1.08 2810 reflections 203 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810023949/hb5506sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023949/hb5506Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13NO4·H2OZ = 2
Mr = 289.28F(000) = 304
Triclinic, P1Dx = 1.436 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7240 (5) ÅCell parameters from 1109 reflections
b = 8.9252 (4) Åθ = 2.6–26.2°
c = 10.7967 (5) ŵ = 0.11 mm1
α = 111.312 (2)°T = 298 K
β = 93.084 (3)°Block, colorless
γ = 117.500 (2)°0.30 × 0.28 × 0.28 mm
V = 669.24 (6) Å3
Bruker SMART CCD diffractometer2810 independent reflections
Radiation source: fine-focus sealed tube1992 reflections with I > 2σ(I)
graphiteRint = 0.013
ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→11
Tmin = 0.968, Tmax = 0.970k = −11→11
4045 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0595P)2 + 0.0161P] where P = (Fo2 + 2Fc2)/3
2810 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.15 e Å3
5 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.91763 (18)0.38037 (19)0.21508 (14)0.0364 (3)
O10.65275 (15)0.22394 (15)−0.01717 (12)0.0446 (3)
O20.65944 (15)0.04540 (16)0.17602 (12)0.0491 (3)
O30.65792 (17)−0.01967 (18)0.35525 (13)0.0611 (4)
O40.59187 (15)0.62901 (16)−0.17000 (12)0.0459 (3)
O50.68483 (19)0.0450 (2)0.63223 (16)0.0715 (5)
C10.8648 (2)0.5485 (2)0.10069 (16)0.0356 (4)
C20.7092 (2)0.3956 (2)−0.00735 (16)0.0341 (4)
C30.6248 (2)0.4303 (2)−0.09650 (16)0.0364 (4)
H30.52440.3306−0.16820.044*
C40.6884 (2)0.6120 (2)−0.07994 (16)0.0371 (4)
C50.8428 (2)0.7642 (2)0.02468 (18)0.0431 (4)
H50.88660.88590.03460.052*
C60.9272 (2)0.7302 (2)0.11142 (18)0.0430 (4)
H61.03010.83090.18050.052*
C70.9597 (2)0.5313 (2)0.19950 (17)0.0377 (4)
H71.06450.64040.26050.045*
C81.0163 (2)0.3714 (2)0.31829 (16)0.0371 (4)
C90.9308 (2)0.2225 (2)0.35416 (16)0.0381 (4)
C101.0311 (2)0.2180 (3)0.45585 (19)0.0486 (5)
H100.97640.12050.48130.058*
C111.2094 (3)0.3539 (3)0.5200 (2)0.0542 (5)
H111.27430.34650.58650.065*
C121.2902 (2)0.5003 (3)0.48467 (19)0.0520 (5)
H121.40980.59370.52890.062*
C131.1959 (2)0.5100 (2)0.38442 (18)0.0449 (4)
H131.25200.60920.36080.054*
C140.7341 (2)0.0706 (2)0.29112 (17)0.0408 (4)
C150.6600 (3)0.8098 (3)−0.1699 (2)0.0545 (5)
H15A0.68320.9017−0.07870.082*
H15B0.57300.8035−0.23300.082*
H15C0.76930.8447−0.19780.082*
H5B0.675 (3)0.022 (3)0.5468 (12)0.080*
H5A0.591 (2)0.046 (3)0.648 (2)0.080*
H10.8112 (18)0.2707 (19)0.166 (2)0.080*
H1A0.5504 (18)0.145 (3)−0.0780 (19)0.080*
U11U22U33U12U13U23
N10.0349 (8)0.0350 (8)0.0348 (7)0.0161 (6)0.0043 (6)0.0143 (6)
O10.0436 (7)0.0320 (6)0.0458 (7)0.0131 (5)−0.0044 (5)0.0157 (5)
O20.0443 (7)0.0412 (7)0.0466 (7)0.0112 (5)−0.0061 (6)0.0213 (6)
O30.0562 (8)0.0592 (8)0.0482 (8)0.0121 (7)0.0074 (6)0.0288 (7)
O40.0474 (7)0.0416 (7)0.0490 (7)0.0213 (6)0.0037 (6)0.0238 (6)
O50.0548 (9)0.0918 (11)0.0524 (9)0.0265 (9)0.0044 (7)0.0331 (9)
C10.0335 (8)0.0346 (9)0.0336 (8)0.0154 (7)0.0053 (7)0.0135 (7)
C20.0337 (8)0.0306 (8)0.0361 (9)0.0151 (7)0.0096 (7)0.0148 (7)
C30.0325 (8)0.0326 (8)0.0355 (9)0.0127 (7)0.0043 (7)0.0127 (7)
C40.0375 (9)0.0389 (9)0.0383 (9)0.0203 (8)0.0106 (7)0.0196 (8)
C50.0433 (10)0.0328 (9)0.0494 (10)0.0155 (8)0.0090 (8)0.0202 (8)
C60.0397 (9)0.0320 (9)0.0419 (10)0.0098 (7)0.0028 (7)0.0137 (7)
C70.0339 (9)0.0342 (9)0.0366 (9)0.0135 (7)0.0056 (7)0.0131 (7)
C80.0375 (9)0.0398 (9)0.0324 (8)0.0225 (8)0.0060 (7)0.0114 (7)
C90.0403 (9)0.0407 (9)0.0338 (9)0.0239 (8)0.0072 (7)0.0133 (7)
C100.0517 (11)0.0553 (11)0.0456 (10)0.0313 (10)0.0098 (8)0.0246 (9)
C110.0513 (11)0.0727 (13)0.0441 (11)0.0381 (11)0.0041 (9)0.0241 (10)
C120.0379 (10)0.0631 (12)0.0454 (11)0.0255 (9)0.0019 (8)0.0164 (10)
C130.0374 (9)0.0456 (10)0.0439 (10)0.0192 (8)0.0061 (8)0.0157 (8)
C140.0441 (10)0.0373 (9)0.0395 (9)0.0207 (8)0.0068 (8)0.0163 (8)
C150.0688 (13)0.0461 (11)0.0553 (12)0.0315 (10)0.0085 (10)0.0275 (9)
N1—C71.301 (2)C5—C61.360 (2)
N1—C81.420 (2)C5—H50.9300
N1—H10.912 (9)C6—H60.9300
O1—C21.3346 (18)C7—H70.9300
O1—H1A0.863 (10)C8—C131.393 (2)
O2—C141.2625 (19)C8—C91.400 (2)
O3—C141.237 (2)C9—C101.391 (2)
O4—C41.3474 (18)C9—C141.517 (2)
O4—C151.438 (2)C10—C111.379 (3)
O5—H5B0.858 (9)C10—H100.9300
O5—H5A0.851 (9)C11—C121.375 (3)
C1—C61.408 (2)C11—H110.9300
C1—C71.410 (2)C12—C131.377 (2)
C1—C21.424 (2)C12—H120.9300
C2—C31.384 (2)C13—H130.9300
C3—C41.384 (2)C15—H15A0.9600
C3—H30.9300C15—H15B0.9600
C4—C51.403 (2)C15—H15C0.9600
C7—N1—C8125.26 (14)C13—C8—C9120.22 (15)
C7—N1—H1121.8 (13)C13—C8—N1120.48 (15)
C8—N1—H1112.5 (13)C9—C8—N1119.29 (14)
C2—O1—H1A109.4 (15)C10—C9—C8117.87 (16)
C4—O4—C15118.67 (13)C10—C9—C14118.71 (16)
H5B—O5—H5A105.0 (17)C8—C9—C14123.39 (15)
C6—C1—C7117.43 (14)C11—C10—C9121.89 (18)
C6—C1—C2117.96 (14)C11—C10—H10119.1
C7—C1—C2124.60 (14)C9—C10—H10119.1
O1—C2—C3123.29 (14)C12—C11—C10119.34 (17)
O1—C2—C1117.29 (14)C12—C11—H11120.3
C3—C2—C1119.42 (14)C10—C11—H11120.3
C2—C3—C4120.63 (14)C11—C12—C13120.63 (17)
C2—C3—H3119.7C11—C12—H12119.7
C4—C3—H3119.7C13—C12—H12119.7
O4—C4—C3115.29 (14)C12—C13—C8120.03 (17)
O4—C4—C5123.87 (14)C12—C13—H13120.0
C3—C4—C5120.83 (14)C8—C13—H13120.0
C6—C5—C4118.62 (15)O3—C14—O2124.52 (16)
C6—C5—H5120.7O3—C14—C9118.27 (15)
C4—C5—H5120.7O2—C14—C9117.21 (15)
C5—C6—C1122.51 (15)O4—C15—H15A109.5
C5—C6—H6118.7O4—C15—H15B109.5
C1—C6—H6118.7H15A—C15—H15B109.5
N1—C7—C1127.47 (15)O4—C15—H15C109.5
N1—C7—H7116.3H15A—C15—H15C109.5
C1—C7—H7116.3H15B—C15—H15C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.91 (1)2.14 (2)2.7257 (17)121 (2)
N1—H1···O20.91 (1)1.88 (2)2.6366 (17)139 (2)
O1—H1A···O2i0.86 (1)1.72 (1)2.5675 (16)165 (2)
O5—H5A···O3ii0.85 (1)2.07 (1)2.907 (2)169 (2)
O5—H5B···O30.86 (1)1.95 (1)2.806 (2)178 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.91 (1)2.14 (2)2.7257 (17)121 (2)
N1—H1⋯O20.91 (1)1.88 (2)2.6366 (17)139 (2)
O1—H1A⋯O2i0.86 (1)1.72 (1)2.5675 (16)165 (2)
O5—H5A⋯O3ii0.85 (1)2.07 (1)2.907 (2)169 (2)
O5—H5B⋯O30.86 (1)1.95 (1)2.806 (2)178 (2)

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-2-[1-(3-Amino-4-chloro-phenyl-imino)eth-yl]-4-bromo-phenol.

Authors:  Hadariah Bahron; Siti Najihah Abu Bakar; Karimah Kassim; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20

3.  4-Phenyl-diazenyl-2-[(R)-(1-phenyl-ethyl)imino-meth-yl]phenol.

Authors:  Yoshikazu Aritake; Yoshimasa Watanabe; Takashiro Akitsu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

4.  (E)-1-[(2-Fluoro-phen-yl)imino-meth-yl]-2-naphthol-(Z)-1-[(2-fluoro-phen-yl)amino-methyl-idene]naphthalen-2(1H)-one (0.57/0.43).

Authors:  Gökhan Alpaslan; Mustafa Macit; Orhan Büyükgüngör; Ahmet Erdönmez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

5.  N'-(2-Hy-droxy-1-naphth-yl-methylidene)-3-meth-oxy-benzohydrazide.

Authors:  Zhi-Xi Hang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

6.  (E)-2-[(3-Fluoro-phen-yl)imino-meth-yl]-4-(trifluoro-meth-oxy)phenol.

Authors:  Yelda Bingöl Alpaslan; Gökhan Alpaslan; Ayşen Ağar; Samil Işık
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-03
  6 in total
  1 in total

1.  Crystal structure of (E)-2-[(4-hy-droxy-benzyl-idene)aza-nium-yl]benzoate.

Authors:  M Nawaz Tahir; Abdul Haleem Khan; Hazoor Ahmad Shad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-16
  1 in total

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