Literature DB >> 25309195

Crystal structure of (E)-2-[(4-hy-droxy-benzyl-idene)aza-nium-yl]benzoate.

M Nawaz Tahir1, Abdul Haleem Khan2, Hazoor Ahmad Shad3.   

Abstract

The title Schiff base, C14H11NO3, crystallizes as a zwitterion (i.e. proton transfer from the carb-oxy-lic acid group to the imine N atom). The dihedral angle between the aromatic rings is 19.59 (6)° and an intra-molecular N-H⋯O hydrogen bond closes an S(6) ring. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R 2 (4)(24) loops. The dimers are linked by C-H⋯O inter-actions, generating (211) sheets.

Entities:  

Keywords:  Schiff bases; aza­nium–carboxyl­ate zwitterion; crystal structure; hydrogen bonding

Year:  2014        PMID: 25309195      PMCID: PMC4186171          DOI: 10.1107/S1600536814018273

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hang et al. (2010 ▶); Ligtenbarg et al. (1999 ▶); Trzesowska-Kruszynska (2010 ▶).

Experimental

Crystal data

C14H11NO3 M = 241.24 Monoclinic, a = 3.8612 (5) Å b = 15.280 (3) Å c = 18.604 (3) Å β = 90.347 (8)° V = 1097.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.38 × 0.17 × 0.15 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.962, T max = 0.985 17364 measured reflections 2089 independent reflections 1363 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.124 S = 1.15 2089 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814018273/hb7268sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018273/hb7268Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018273/hb7268Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018273/hb7268fig1.tif View of the title compound with displacement ellipsoids drawn at the 50% probability level. The dotted line represents the intra­molecular H-bond. Click here for additional data file. . DOI: 10.1107/S1600536814018273/hb7268fig2.tif The partial packing, which shows that mol­ecules form dimers which are inter­linked. CCDC reference: 1018737 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H11NO3F(000) = 504
Mr = 241.24Dx = 1.460 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 3.8612 (5) ÅCell parameters from 1363 reflections
b = 15.280 (3) Åθ = 1.8–26.0°
c = 18.604 (3) ŵ = 0.10 mm1
β = 90.347 (8)°T = 296 K
V = 1097.6 (3) Å3Cut needle, yellow
Z = 40.38 × 0.17 × 0.15 mm
Bruker Kappa APEXII CCD diffractometer2089 independent reflections
Radiation source: fine-focus sealed tube1363 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.065
Detector resolution: 8.00 pixels mm-1θmax = 26.0°, θmin = 1.7°
ω scansh = −4→4
Absorption correction: multi-scan (SADABS; Bruker, 2007)k = −18→18
Tmin = 0.962, Tmax = 0.985l = −22→22
17364 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0187P)2 + 1.0858P] where P = (Fo2 + 2Fc2)/3
2089 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1341 (6)−0.08844 (13)0.32981 (10)0.0469 (6)
O20.0144 (7)−0.18735 (14)0.24574 (12)0.0580 (7)
O30.6380 (6)0.22716 (14)0.59807 (11)0.0489 (6)
H3A0.701 (9)0.177 (2)0.6251 (19)0.073*
N1−0.0068 (6)0.07058 (16)0.30803 (13)0.0360 (6)
H10.067 (7)0.016 (2)0.3337 (15)0.043*
C10.0114 (8)−0.1120 (2)0.26817 (16)0.0394 (7)
C2−0.1414 (7)−0.04003 (18)0.22116 (14)0.0328 (7)
C3−0.2813 (8)−0.0637 (2)0.15519 (15)0.0398 (7)
H3−0.2817−0.12230.14170.048*
C4−0.4196 (8)−0.0021 (2)0.10915 (16)0.0460 (8)
H4−0.5103−0.01920.06490.055*
C5−0.4233 (8)0.0847 (2)0.12868 (16)0.0461 (8)
H5−0.51710.12610.09750.055*
C6−0.2890 (8)0.1107 (2)0.19417 (16)0.0416 (8)
H6−0.29310.16940.20740.050*
C7−0.1485 (7)0.04873 (18)0.23973 (14)0.0332 (7)
C80.0590 (7)0.14802 (19)0.33225 (15)0.0370 (7)
H80.01250.19550.30250.044*
C90.1993 (7)0.16514 (18)0.40216 (15)0.0342 (7)
C100.2987 (7)0.25053 (19)0.41916 (16)0.0384 (7)
H100.26740.29470.38540.046*
C110.4416 (8)0.27050 (19)0.48472 (16)0.0397 (7)
H110.50630.32780.49500.048*
C120.4901 (8)0.20511 (19)0.53595 (15)0.0365 (7)
C130.3814 (7)0.12005 (18)0.52047 (15)0.0375 (7)
H130.40510.07640.55500.045*
C140.2400 (8)0.10038 (19)0.45483 (15)0.0376 (7)
H140.17000.04330.44510.045*
U11U22U33U12U13U23
O10.0702 (15)0.0380 (12)0.0324 (12)0.0036 (11)−0.0144 (11)0.0019 (9)
O20.0942 (19)0.0323 (12)0.0474 (14)0.0034 (13)−0.0117 (13)−0.0025 (11)
O30.0679 (16)0.0367 (13)0.0419 (13)−0.0001 (11)−0.0187 (11)−0.0015 (10)
N10.0437 (15)0.0313 (14)0.0329 (13)0.0036 (11)−0.0026 (11)−0.0010 (11)
C10.0498 (19)0.0336 (17)0.0347 (17)−0.0006 (14)0.0009 (15)0.0032 (14)
C20.0340 (16)0.0343 (16)0.0300 (15)0.0000 (13)0.0007 (13)0.0007 (12)
C30.0438 (18)0.0382 (18)0.0374 (17)−0.0019 (14)−0.0049 (14)−0.0030 (14)
C40.0479 (19)0.056 (2)0.0344 (18)0.0010 (16)−0.0085 (15)−0.0005 (15)
C50.050 (2)0.048 (2)0.0400 (18)0.0060 (16)−0.0051 (16)0.0115 (16)
C60.0443 (19)0.0354 (17)0.0452 (19)0.0038 (14)−0.0015 (15)0.0032 (14)
C70.0370 (17)0.0347 (17)0.0278 (15)−0.0001 (13)−0.0005 (13)0.0003 (12)
C80.0401 (17)0.0319 (16)0.0390 (17)0.0000 (13)−0.0009 (14)0.0033 (14)
C90.0350 (16)0.0313 (16)0.0362 (16)0.0019 (13)−0.0024 (13)−0.0017 (13)
C100.0439 (18)0.0305 (16)0.0407 (18)0.0027 (14)−0.0066 (14)0.0064 (13)
C110.0461 (18)0.0271 (16)0.0457 (19)−0.0011 (13)−0.0075 (15)−0.0018 (14)
C120.0389 (17)0.0359 (17)0.0345 (16)0.0020 (13)−0.0027 (14)−0.0028 (13)
C130.0472 (19)0.0289 (16)0.0365 (17)0.0018 (14)0.0006 (14)0.0047 (13)
C140.0442 (18)0.0280 (16)0.0404 (17)−0.0022 (13)0.0000 (14)−0.0035 (13)
O1—C11.289 (3)C5—H50.9300
O2—C11.225 (3)C6—C71.380 (4)
O3—C121.329 (3)C6—H60.9300
O3—H3A0.95 (4)C8—C91.430 (4)
N1—C81.291 (3)C8—H80.9300
N1—C71.420 (3)C9—C101.396 (4)
N1—H11.00 (3)C9—C141.401 (4)
C1—C21.522 (4)C10—C111.370 (4)
C2—C31.386 (4)C10—H100.9300
C2—C71.400 (4)C11—C121.393 (4)
C3—C41.378 (4)C11—H110.9300
C3—H30.9300C12—C131.395 (4)
C4—C51.375 (4)C13—C141.368 (4)
C4—H40.9300C13—H130.9300
C5—C61.380 (4)C14—H140.9300
C12—O3—H3A111 (2)C6—C7—N1122.4 (3)
C8—N1—C7127.0 (3)C2—C7—N1116.1 (2)
C8—N1—H1122.7 (16)N1—C8—C9123.9 (3)
C7—N1—H1109.9 (16)N1—C8—H8118.0
O2—C1—O1124.2 (3)C9—C8—H8118.0
O2—C1—C2119.2 (3)C10—C9—C14118.2 (3)
O1—C1—C2116.6 (3)C10—C9—C8118.6 (3)
C3—C2—C7117.6 (3)C14—C9—C8123.2 (3)
C3—C2—C1117.9 (3)C11—C10—C9121.2 (3)
C7—C2—C1124.5 (2)C11—C10—H10119.4
C4—C3—C2121.4 (3)C9—C10—H10119.4
C4—C3—H3119.3C10—C11—C12120.1 (3)
C2—C3—H3119.3C10—C11—H11120.0
C5—C4—C3119.9 (3)C12—C11—H11120.0
C5—C4—H4120.0O3—C12—C11117.9 (3)
C3—C4—H4120.0O3—C12—C13122.9 (3)
C4—C5—C6120.5 (3)C11—C12—C13119.2 (3)
C4—C5—H5119.8C14—C13—C12120.5 (3)
C6—C5—H5119.8C14—C13—H13119.8
C5—C6—C7119.2 (3)C12—C13—H13119.8
C5—C6—H6120.4C13—C14—C9120.8 (3)
C7—C6—H6120.4C13—C14—H14119.6
C6—C7—C2121.4 (3)C9—C14—H14119.6
O2—C1—C2—C31.9 (4)C8—N1—C7—C6−11.1 (5)
O1—C1—C2—C3−178.8 (3)C8—N1—C7—C2169.5 (3)
O2—C1—C2—C7−177.6 (3)C7—N1—C8—C9179.4 (3)
O1—C1—C2—C71.7 (4)N1—C8—C9—C10172.3 (3)
C7—C2—C3—C40.6 (4)N1—C8—C9—C14−8.1 (5)
C1—C2—C3—C4−179.0 (3)C14—C9—C10—C111.9 (4)
C2—C3—C4—C5−0.6 (5)C8—C9—C10—C11−178.6 (3)
C3—C4—C5—C60.1 (5)C9—C10—C11—C120.0 (5)
C4—C5—C6—C70.4 (5)C10—C11—C12—O3178.3 (3)
C5—C6—C7—C2−0.4 (4)C10—C11—C12—C13−2.1 (4)
C5—C6—C7—N1−179.7 (3)O3—C12—C13—C14−178.0 (3)
C3—C2—C7—C60.0 (4)C11—C12—C13—C142.3 (4)
C1—C2—C7—C6179.5 (3)C12—C13—C14—C9−0.5 (4)
C3—C2—C7—N1179.3 (3)C10—C9—C14—C13−1.6 (4)
C1—C2—C7—N1−1.2 (4)C8—C9—C14—C13178.8 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1i0.95 (4)1.71 (4)2.656 (3)173 (3)
N1—H1···O11.00 (3)1.62 (3)2.522 (3)148 (2)
C6—H6···O2ii0.932.513.397 (4)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O1i 0.95 (4)1.71 (4)2.656 (3)173 (3)
N1—H1⋯O11.00 (3)1.62 (3)2.522 (3)148 (2)
C6—H6⋯O2ii 0.932.513.397 (4)160

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(2-Hy-droxy-4-meth-oxy-benzyl-idene)aza-nium-yl]benzoate monohydrate.

Authors:  Zhi-Xi Hang; Bo Dong; Xing-Wen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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