| Literature DB >> 21587896 |
Abstract
In the title compound, C(13)H(9)N(3)O(2)·H(2)O, the dihedral angle between the aromatic rings is 10.7 (4)° and an intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, the components are linked by N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21587896 PMCID: PMC3006838 DOI: 10.1107/S1600536810022221
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H9N3O2·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1568 reflections |
| θ = 2.7–25.5° | |
| µ = 0.10 mm−1 | |
| β = 103.38 (3)° | Block, colorless |
| 0.22 × 0.20 × 0.18 mm | |
| Bruker SMART CCD diffractometer | 1568 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.5°, θmin = 3.3° |
| φ and ω scans | |
| 11389 measured reflections | |
| 2834 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2834 reflections | (Δ/σ)max < 0.001 |
| 180 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N2 | 0.2572 (2) | 0.42473 (10) | 0.51829 (12) | 0.0431 (4) | |
| N1 | 0.2142 (2) | 0.34390 (9) | 0.45997 (12) | 0.0440 (4) | |
| H1A | 0.1704 | 0.3458 | 0.3906 | 0.053* | |
| O1 | 0.10154 (18) | 0.19128 (9) | 0.33670 (10) | 0.0526 (4) | |
| C6 | 0.2239 (3) | 0.50009 (12) | 0.46228 (15) | 0.0461 (5) | |
| H6A | 0.1747 | 0.4964 | 0.3875 | 0.055* | |
| C4 | 0.1844 (3) | 0.17816 (13) | 0.44486 (15) | 0.0442 (5) | |
| O3 | 0.0883 (2) | 0.37589 (11) | 0.22607 (12) | 0.0654 (5) | |
| C13 | 0.3865 (3) | 0.85907 (14) | 0.65549 (17) | 0.0548 (5) | |
| O2 | 0.3075 (2) | 0.25365 (9) | 0.61179 (11) | 0.0595 (4) | |
| C12 | 0.3138 (3) | 0.60216 (13) | 0.62661 (16) | 0.0525 (5) | |
| H12A | 0.3218 | 0.5497 | 0.6709 | 0.063* | |
| C7 | 0.2620 (3) | 0.59186 (12) | 0.51417 (15) | 0.0420 (4) | |
| C5 | 0.2414 (3) | 0.26093 (12) | 0.51272 (15) | 0.0436 (4) | |
| C8 | 0.2453 (3) | 0.67132 (13) | 0.44979 (16) | 0.0518 (5) | |
| H8A | 0.2069 | 0.6655 | 0.3746 | 0.062* | |
| C11 | 0.3534 (3) | 0.68908 (13) | 0.67294 (16) | 0.0551 (5) | |
| H11A | 0.3887 | 0.6952 | 0.7482 | 0.066* | |
| C10 | 0.3405 (3) | 0.76786 (12) | 0.60708 (16) | 0.0453 (5) | |
| C2 | 0.0589 (3) | 0.10477 (13) | 0.29261 (18) | 0.0566 (6) | |
| H2B | 0.0003 | 0.0931 | 0.2200 | 0.068* | |
| N3 | 0.4234 (3) | 0.93164 (12) | 0.69148 (17) | 0.0721 (6) | |
| C1 | 0.1133 (3) | 0.03943 (15) | 0.36854 (18) | 0.0654 (6) | |
| H1B | 0.1006 | −0.0249 | 0.3588 | 0.078* | |
| C9 | 0.2850 (3) | 0.75903 (13) | 0.49571 (16) | 0.0521 (5) | |
| H9A | 0.2741 | 0.8118 | 0.4516 | 0.062* | |
| C3 | 0.1943 (3) | 0.08674 (13) | 0.46686 (18) | 0.0617 (6) | |
| H3A | 0.2449 | 0.0593 | 0.5342 | 0.074* | |
| H3B | 0.025 (5) | 0.438 (3) | 0.208 (3) | 0.156 (14)* | |
| H3C | −0.005 (4) | 0.337 (2) | 0.197 (3) | 0.120 (12)* |
| N2 | 0.0504 (9) | 0.0360 (8) | 0.0404 (9) | 0.0034 (7) | 0.0056 (7) | −0.0056 (7) |
| N1 | 0.0572 (9) | 0.0360 (8) | 0.0346 (9) | 0.0018 (7) | 0.0023 (7) | −0.0016 (6) |
| O1 | 0.0708 (9) | 0.0435 (7) | 0.0389 (8) | −0.0040 (7) | 0.0030 (6) | 0.0018 (6) |
| C6 | 0.0560 (11) | 0.0405 (10) | 0.0384 (11) | 0.0028 (9) | 0.0037 (8) | −0.0023 (8) |
| C4 | 0.0466 (10) | 0.0473 (11) | 0.0366 (11) | 0.0005 (9) | 0.0052 (8) | 0.0017 (8) |
| O3 | 0.0897 (11) | 0.0468 (9) | 0.0497 (9) | −0.0047 (9) | −0.0044 (8) | 0.0021 (7) |
| C13 | 0.0600 (12) | 0.0438 (11) | 0.0576 (13) | 0.0031 (10) | 0.0073 (10) | −0.0013 (10) |
| O2 | 0.0829 (10) | 0.0532 (8) | 0.0369 (8) | 0.0059 (7) | 0.0026 (7) | 0.0064 (6) |
| C12 | 0.0739 (14) | 0.0408 (10) | 0.0418 (11) | 0.0062 (10) | 0.0114 (10) | 0.0024 (8) |
| C7 | 0.0435 (10) | 0.0381 (10) | 0.0428 (11) | 0.0050 (8) | 0.0072 (8) | −0.0002 (8) |
| C5 | 0.0451 (10) | 0.0468 (11) | 0.0377 (11) | 0.0064 (9) | 0.0074 (8) | 0.0064 (8) |
| C8 | 0.0653 (12) | 0.0467 (11) | 0.0392 (12) | 0.0028 (9) | 0.0038 (9) | −0.0003 (8) |
| C11 | 0.0768 (14) | 0.0483 (11) | 0.0369 (11) | 0.0042 (10) | 0.0064 (10) | −0.0036 (9) |
| C10 | 0.0469 (10) | 0.0383 (10) | 0.0490 (12) | 0.0020 (8) | 0.0077 (8) | −0.0048 (8) |
| C2 | 0.0708 (14) | 0.0460 (11) | 0.0488 (12) | −0.0087 (10) | 0.0052 (10) | −0.0062 (9) |
| N3 | 0.0868 (14) | 0.0448 (11) | 0.0786 (14) | −0.0037 (10) | 0.0064 (11) | −0.0129 (9) |
| C1 | 0.0812 (15) | 0.0401 (11) | 0.0656 (15) | −0.0037 (11) | −0.0021 (12) | −0.0018 (10) |
| C9 | 0.0625 (12) | 0.0396 (10) | 0.0513 (13) | 0.0008 (9) | 0.0075 (10) | 0.0067 (9) |
| C3 | 0.0757 (14) | 0.0430 (11) | 0.0575 (14) | 0.0020 (10) | −0.0030 (11) | 0.0125 (9) |
| N2—C6 | 1.281 (2) | C12—C11 | 1.374 (3) |
| N2—N1 | 1.3664 (18) | C12—C7 | 1.391 (3) |
| N1—C5 | 1.352 (2) | C12—H12A | 0.9300 |
| N1—H1A | 0.8600 | C7—C8 | 1.386 (2) |
| O1—C2 | 1.361 (2) | C8—C9 | 1.383 (2) |
| O1—C4 | 1.370 (2) | C8—H8A | 0.9300 |
| C6—C7 | 1.464 (2) | C11—C10 | 1.391 (3) |
| C6—H6A | 0.9300 | C11—H11A | 0.9300 |
| C4—C3 | 1.335 (2) | C10—C9 | 1.377 (3) |
| C4—C5 | 1.462 (2) | C2—C1 | 1.331 (3) |
| O3—H3B | 1.00 (4) | C2—H2B | 0.9300 |
| O3—H3C | 0.87 (3) | C1—C3 | 1.414 (3) |
| C13—N3 | 1.139 (2) | C1—H1B | 0.9300 |
| C13—C10 | 1.445 (3) | C9—H9A | 0.9300 |
| O2—C5 | 1.235 (2) | C3—H3A | 0.9300 |
| C6—N2—N1 | 115.07 (15) | C9—C8—C7 | 121.00 (18) |
| C5—N1—N2 | 119.16 (15) | C9—C8—H8A | 119.5 |
| C5—N1—H1A | 120.4 | C7—C8—H8A | 119.5 |
| N2—N1—H1A | 120.4 | C12—C11—C10 | 119.89 (18) |
| C2—O1—C4 | 106.68 (15) | C12—C11—H11A | 120.1 |
| N2—C6—C7 | 121.01 (17) | C10—C11—H11A | 120.1 |
| N2—C6—H6A | 119.5 | C9—C10—C11 | 120.09 (17) |
| C7—C6—H6A | 119.5 | C9—C10—C13 | 119.90 (17) |
| C3—C4—O1 | 109.38 (16) | C11—C10—C13 | 120.01 (18) |
| C3—C4—C5 | 132.55 (18) | C1—C2—O1 | 110.06 (19) |
| O1—C4—C5 | 118.07 (15) | C1—C2—H2B | 125.0 |
| H3B—O3—H3C | 102 (3) | O1—C2—H2B | 125.0 |
| N3—C13—C10 | 178.5 (2) | C2—C1—C3 | 106.77 (19) |
| C11—C12—C7 | 120.69 (17) | C2—C1—H1B | 126.6 |
| C11—C12—H12A | 119.7 | C3—C1—H1B | 126.6 |
| C7—C12—H12A | 119.7 | C10—C9—C8 | 119.63 (17) |
| C8—C7—C12 | 118.66 (16) | C10—C9—H9A | 120.2 |
| C8—C7—C6 | 119.31 (17) | C8—C9—H9A | 120.2 |
| C12—C7—C6 | 122.03 (16) | C4—C3—C1 | 107.11 (19) |
| O2—C5—N1 | 123.42 (16) | C4—C3—H3A | 126.4 |
| O2—C5—C4 | 120.96 (16) | C1—C3—H3A | 126.4 |
| N1—C5—C4 | 115.60 (16) |
| H··· | ||||
| N1—H1A···O1 | 0.86 | 2.33 | 2.692 (2) | 106 |
| N1—H1A···O3 | 0.86 | 2.07 | 2.920 (2) | 169 |
| O3—H3B···N3i | 1.00 (4) | 1.99 (4) | 2.980 (2) | 172 (3) |
| O3—H3C···O2ii | 0.88 (3) | 1.98 (3) | 2.848 (2) | 171 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.33 | 2.692 (2) | 106 |
| N1—H1 | 0.86 | 2.07 | 2.920 (2) | 169 |
| O3—H3 | 1.00 (4) | 1.99 (4) | 2.980 (2) | 172 (3) |
| O3—H3 | 0.88 (3) | 1.98 (3) | 2.848 (2) | 171 (3) |
Symmetry codes: (i) ; (ii) .