Literature DB >> 24098262

2-Amino-5-methyl-3-(2-oxo-2-phenyl-eth-yl)-7-phenyl-4,5,6,7-tetra-hydro-3H-[1,2,4]triazolo[1,5-a]pyrimidin-8-ium bromide ethanol monosolvate.

Victor M Chernyshev1, Dmitriy A Pyatakov, Kyrill Yu Suponitsky.   

Abstract

In the title compound, C20H22N5O(+)·Br(-)·C2H6O, the tetra-hydro-pyrimidine ring of the bicyclic cation adopts a half-chair conformation with an equatorial orientation of the phenyl and methyl substituents. The amino group is nearly coplanar with the 1,2,4-triazole ring [interplanar angle = 4.08 (8)°] and has a slightly pyramidal configuration. The mean planes of the triazole ring and the benzene ring of the phenacyl group form a dihedral angle of 88.58 (7)°. In the crystal, N-H⋯Br, N-H⋯O and O-H⋯Br hydrogen bonds link the cations, anions and ethanol mol-ecules into layers parallel to the bc plane.

Entities:  

Year:  2013        PMID: 24098262      PMCID: PMC3790443          DOI: 10.1107/S1600536813025853

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and reactivity of partially hydrogenated [1,2,4]triazolo[1,5-a]pyrimidines, see: Desenko (1995 ▶); Desenko et al. (1994 ▶); Chebanov et al. (2008 ▶, 2010 ▶); Gorobets et al. (2012 ▶); Lipson et al. (2012 ▶), Chernyshev et al. (2008a ▶,b ▶). For applications of partially hydrogenated triazolo­pyrimidines in the synthesis of polycondensed heterocycles, see: Beck et al. (2011 ▶); Lipson et al. (2006 ▶); Sidorenko & Orlov (2011 ▶); Sokolov et al. (2011 ▶). For structures of protonated C-amino-1,2,4-triazoles and quaternized derivatives of tetra­hydro­triazolo­pyrimidines, see: Chernyshev et al. (2008a ▶, 2010 ▶); Matulkova et al. (2012 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For the correlation of bond lengths with bond orders between the sp 2 hybridized C and N atoms, see: Burke-Laing & Laing (1976 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H22N5O+·Br−·C2H6O M = 474.40 Monoclinic, a = 10.7471 (13) Å b = 13.3261 (16) Å c = 15.5792 (19) Å β = 95.735 (2)° V = 2220.0 (5) Å3 Z = 4 Mo Kα radiation μ = 1.88 mm−1 T = 120 K 0.22 × 0.19 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.520, T max = 0.713 31509 measured reflections 5356 independent reflections 4309 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.01 5356 reflections 273 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, publCIF (Westrip, 2010 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813025853/aa2095sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025853/aa2095Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025853/aa2095Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025853/aa2095Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22N5O+·Br·C2H6OF(000) = 984
Mr = 474.40Dx = 1.419 Mg m3
Monoclinic, P21/cMelting point: 190 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.7471 (13) ÅCell parameters from 8717 reflections
b = 13.3261 (16) Åθ = 2.4–28.0°
c = 15.5792 (19) ŵ = 1.88 mm1
β = 95.735 (2)°T = 120 K
V = 2220.0 (5) Å3Prizm, colourless
Z = 40.22 × 0.19 × 0.18 mm
Bruker SMART APEXII CCD area-detector diffractometer5356 independent reflections
Radiation source: fine-focus sealed tube4309 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
phi and ω scansθmax = 28.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −14→14
Tmin = 0.520, Tmax = 0.713k = −17→17
31509 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: mixed
wR(F2) = 0.082H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.037P)2 + 1.2826P] where P = (Fo2 + 2Fc2)/3
5356 reflections(Δ/σ)max = 0.001
273 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All s.u.'s (except the s.u.'s in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.543412 (18)0.702949 (15)0.181863 (12)0.02186 (7)
O10.83014 (13)0.48942 (12)0.72034 (9)0.0258 (3)
N10.62069 (14)0.47059 (12)0.61743 (10)0.0168 (3)
N20.67921 (15)0.46201 (12)0.48350 (10)0.0192 (3)
N30.68765 (14)0.36830 (12)0.52479 (10)0.0178 (3)
N40.64780 (15)0.29581 (12)0.65761 (10)0.0204 (3)
H3N0.59820.29910.70080.025*
N50.62162 (16)0.62146 (13)0.53199 (11)0.0229 (4)
H1N0.64640.64740.48310.028*
H2N0.60760.65340.58100.028*
C10.65153 (17)0.37328 (14)0.60340 (12)0.0174 (4)
C20.64195 (17)0.52227 (15)0.54245 (12)0.0175 (4)
C30.72309 (18)0.27569 (14)0.48255 (12)0.0190 (4)
H3A0.65020.25110.44320.023*
C40.75412 (19)0.19832 (15)0.55517 (13)0.0221 (4)
H4A0.76120.13100.52920.027*
H4B0.83630.21520.58640.027*
C50.65589 (19)0.19465 (14)0.61958 (13)0.0219 (4)
H5A0.57300.17650.58850.026*
C60.6897 (2)0.11877 (16)0.69099 (14)0.0282 (5)
H6A0.63060.12450.73480.042*
H6B0.77460.13200.71750.042*
H6C0.68560.05090.66670.042*
C70.83408 (17)0.28950 (14)0.43140 (12)0.0180 (4)
C80.92976 (18)0.35757 (16)0.45378 (13)0.0235 (4)
H8A0.92390.40230.50070.028*
C91.0336 (2)0.36042 (17)0.40785 (14)0.0281 (5)
H9A1.09790.40800.42290.034*
C101.0448 (2)0.29453 (17)0.34016 (14)0.0295 (5)
H10A1.11680.29630.30950.035*
C110.9504 (2)0.22620 (18)0.31757 (13)0.0298 (5)
H11A0.95740.18060.27150.036*
C120.8450 (2)0.22454 (16)0.36260 (13)0.0240 (4)
H12A0.77960.17840.34620.029*
C130.60915 (17)0.51128 (15)0.70338 (11)0.0181 (4)
H13A0.55050.46960.73320.022*
H13B0.57550.58040.69850.022*
C140.73822 (18)0.51207 (14)0.75576 (12)0.0188 (4)
C150.74642 (18)0.54203 (14)0.84815 (12)0.0194 (4)
C160.8639 (2)0.56537 (17)0.88979 (14)0.0275 (4)
H16A0.93600.56060.85940.033*
C170.8757 (2)0.59558 (18)0.97557 (14)0.0316 (5)
H17A0.95570.61231.00340.038*
C180.7711 (2)0.60135 (17)1.02054 (13)0.0285 (5)
H18A0.77940.62261.07900.034*
C190.6546 (2)0.57634 (16)0.98056 (13)0.0259 (4)
H19A0.58330.57931.01190.031*
C200.64158 (19)0.54670 (15)0.89427 (12)0.0222 (4)
H20A0.56140.52970.86690.027*
O1S0.69870 (16)0.69468 (12)0.37452 (10)0.0329 (4)
H1S0.66820.70570.32290.049*
C1S0.8245 (2)0.6690 (2)0.36528 (16)0.0407 (6)
H1SA0.86980.66010.42330.049*
H1SB0.86440.72520.33680.049*
C2S0.8375 (2)0.57495 (19)0.31379 (17)0.0395 (6)
H2SA0.92630.55790.31410.059*
H2SB0.80130.58580.25430.059*
H2SC0.79360.51980.33940.059*
U11U22U33U12U13U23
Br10.02512 (11)0.02392 (11)0.01705 (10)−0.00020 (8)0.00457 (7)0.00345 (8)
O10.0210 (7)0.0330 (8)0.0241 (7)0.0005 (6)0.0060 (6)−0.0020 (6)
N10.0212 (8)0.0161 (8)0.0135 (7)0.0028 (6)0.0038 (6)−0.0005 (6)
N20.0223 (8)0.0176 (8)0.0180 (8)0.0019 (6)0.0032 (6)0.0014 (6)
N30.0200 (8)0.0176 (8)0.0163 (7)0.0023 (6)0.0033 (6)−0.0010 (6)
N40.0258 (8)0.0176 (8)0.0190 (8)0.0014 (6)0.0078 (6)0.0015 (6)
N50.0322 (9)0.0194 (9)0.0185 (8)0.0042 (7)0.0095 (7)0.0023 (6)
C10.0155 (9)0.0189 (9)0.0178 (9)−0.0002 (7)0.0020 (7)−0.0007 (7)
C20.0161 (9)0.0217 (10)0.0148 (8)0.0001 (7)0.0022 (7)0.0015 (7)
C30.0201 (9)0.0192 (10)0.0179 (9)−0.0008 (7)0.0034 (7)−0.0055 (7)
C40.0256 (10)0.0162 (9)0.0255 (10)−0.0006 (8)0.0069 (8)−0.0025 (8)
C50.0241 (10)0.0177 (10)0.0246 (10)−0.0023 (8)0.0060 (8)−0.0015 (8)
C60.0381 (12)0.0191 (10)0.0285 (11)−0.0004 (9)0.0098 (9)0.0021 (8)
C70.0186 (9)0.0184 (9)0.0170 (8)0.0026 (7)0.0023 (7)−0.0001 (7)
C80.0233 (10)0.0229 (10)0.0244 (10)−0.0003 (8)0.0027 (8)−0.0037 (8)
C90.0235 (10)0.0262 (11)0.0348 (12)−0.0026 (8)0.0042 (9)0.0020 (9)
C100.0276 (11)0.0338 (12)0.0291 (11)0.0055 (9)0.0132 (9)0.0063 (9)
C110.0357 (12)0.0328 (12)0.0219 (10)0.0047 (9)0.0091 (9)−0.0056 (9)
C120.0265 (10)0.0232 (10)0.0223 (10)−0.0001 (8)0.0032 (8)−0.0036 (8)
C130.0220 (9)0.0193 (9)0.0140 (8)0.0027 (7)0.0064 (7)−0.0005 (7)
C140.0227 (10)0.0148 (9)0.0194 (9)−0.0014 (7)0.0044 (7)0.0015 (7)
C150.0249 (10)0.0157 (9)0.0171 (9)0.0010 (7)−0.0003 (7)0.0017 (7)
C160.0253 (11)0.0288 (11)0.0282 (11)−0.0008 (8)0.0023 (8)−0.0024 (9)
C170.0310 (12)0.0350 (13)0.0269 (11)−0.0038 (9)−0.0070 (9)−0.0023 (9)
C180.0414 (13)0.0245 (11)0.0185 (10)0.0009 (9)−0.0027 (8)−0.0022 (8)
C190.0335 (11)0.0231 (10)0.0214 (10)0.0020 (8)0.0052 (8)0.0009 (8)
C200.0258 (10)0.0212 (10)0.0195 (9)0.0013 (8)0.0013 (7)−0.0006 (8)
O1S0.0432 (9)0.0366 (9)0.0191 (7)0.0049 (7)0.0041 (6)0.0034 (6)
C1S0.0407 (14)0.0546 (16)0.0265 (12)−0.0076 (12)0.0015 (10)−0.0021 (11)
C2S0.0408 (14)0.0338 (13)0.0462 (14)0.0064 (10)0.0156 (11)0.0128 (11)
O1—C141.217 (2)C9—H9A0.9500
N1—C11.361 (2)C10—C111.382 (3)
N1—C21.394 (2)C10—H10A0.9500
N1—C131.461 (2)C11—C121.390 (3)
N2—C21.312 (2)C11—H11A0.9500
N2—N31.403 (2)C12—H12A0.9500
N3—C11.323 (2)C13—C141.537 (3)
N3—C31.467 (2)C13—H13A0.9900
N4—C11.337 (2)C13—H13B0.9900
N4—C51.479 (2)C14—C151.488 (3)
N4—H3N0.9001C15—C161.396 (3)
N5—C21.347 (2)C15—C201.397 (3)
N5—H1N0.9000C16—C171.389 (3)
N5—H2N0.9001C16—H16A0.9500
C3—C71.510 (3)C17—C181.385 (3)
C3—C41.542 (3)C17—H17A0.9500
C3—H3A1.0000C18—C191.382 (3)
C4—C51.528 (3)C18—H18A0.9500
C4—H4A0.9900C19—C201.395 (3)
C4—H4B0.9900C19—H19A0.9500
C5—C61.520 (3)C20—H20A0.9500
C5—H5A1.0000O1S—C1S1.416 (3)
C6—H6A0.9800O1S—H1S0.8502
C6—H6B0.9800C1S—C2S1.503 (4)
C6—H6C0.9800C1S—H1SA0.9900
C7—C81.389 (3)C1S—H1SB0.9900
C7—C121.392 (3)C2S—H2SA0.9800
C8—C91.385 (3)C2S—H2SB0.9800
C8—H8A0.9500C2S—H2SC0.9800
C9—C101.387 (3)
C1—N1—C2105.84 (14)C10—C9—H9A119.6
C1—N1—C13123.01 (15)C11—C10—C9119.59 (19)
C2—N1—C13128.34 (16)C11—C10—H10A120.2
C2—N2—N3103.54 (14)C9—C10—H10A120.2
C1—N3—N2111.60 (15)C10—C11—C12119.7 (2)
C1—N3—C3124.82 (16)C10—C11—H11A120.1
N2—N3—C3123.43 (15)C12—C11—H11A120.1
C1—N4—C5116.37 (16)C11—C12—C7121.0 (2)
C1—N4—H3N119.5C11—C12—H12A119.5
C5—N4—H3N114.0C7—C12—H12A119.5
C2—N5—H1N114.9N1—C13—C14109.53 (14)
C2—N5—H2N113.6N1—C13—H13A109.8
H1N—N5—H2N128.6C14—C13—H13A109.8
N3—C1—N4125.18 (17)N1—C13—H13B109.8
N3—C1—N1107.16 (16)C14—C13—H13B109.8
N4—C1—N1127.66 (17)H13A—C13—H13B108.2
N2—C2—N5124.96 (17)O1—C14—C15122.21 (18)
N2—C2—N1111.78 (16)O1—C14—C13119.20 (17)
N5—C2—N1123.22 (16)C15—C14—C13118.58 (16)
N3—C3—C7112.85 (16)C16—C15—C20119.32 (18)
N3—C3—C4106.27 (15)C16—C15—C14118.22 (17)
C7—C3—C4110.14 (16)C20—C15—C14122.45 (18)
N3—C3—H3A109.2C17—C16—C15120.2 (2)
C7—C3—H3A109.2C17—C16—H16A119.9
C4—C3—H3A109.2C15—C16—H16A119.9
C5—C4—C3112.97 (16)C18—C17—C16120.1 (2)
C5—C4—H4A109.0C18—C17—H17A119.9
C3—C4—H4A109.0C16—C17—H17A119.9
C5—C4—H4B109.0C19—C18—C17120.2 (2)
C3—C4—H4B109.0C19—C18—H18A119.9
H4A—C4—H4B107.8C17—C18—H18A119.9
N4—C5—C6109.42 (16)C18—C19—C20120.15 (19)
N4—C5—C4107.82 (15)C18—C19—H19A119.9
C6—C5—C4111.81 (17)C20—C19—H19A119.9
N4—C5—H5A109.3C19—C20—C15119.98 (19)
C6—C5—H5A109.2C19—C20—H20A120.0
C4—C5—H5A109.2C15—C20—H20A120.0
C5—C6—H6A109.5C1S—O1S—H1S103.1
C5—C6—H6B109.5O1S—C1S—C2S113.4 (2)
H6A—C6—H6B109.5O1S—C1S—H1SA108.9
C5—C6—H6C109.5C2S—C1S—H1SA108.9
H6A—C6—H6C109.5O1S—C1S—H1SB108.9
H6B—C6—H6C109.5C2S—C1S—H1SB108.9
C8—C7—C12118.81 (18)H1SA—C1S—H1SB107.7
C8—C7—C3123.43 (17)C1S—C2S—H2SA109.5
C12—C7—C3117.55 (17)C1S—C2S—H2SB109.5
C9—C8—C7120.17 (19)H2SA—C2S—H2SB109.5
C9—C8—H8A119.9C1S—C2S—H2SC109.5
C7—C8—H8A119.9H2SA—C2S—H2SC109.5
C8—C9—C10120.7 (2)H2SB—C2S—H2SC109.5
C8—C9—H9A119.6
C2—N2—N3—C12.6 (2)N3—C3—C7—C831.3 (3)
C2—N2—N3—C3178.23 (16)C4—C3—C7—C8−87.2 (2)
N2—N3—C1—N4179.06 (17)N3—C3—C7—C12−154.10 (17)
C3—N3—C1—N43.5 (3)C4—C3—C7—C1287.3 (2)
N2—N3—C1—N1−1.3 (2)C12—C7—C8—C90.2 (3)
C3—N3—C1—N1−176.87 (16)C3—C7—C8—C9174.75 (19)
C5—N4—C1—N3−15.1 (3)C7—C8—C9—C10−1.2 (3)
C5—N4—C1—N1165.38 (18)C8—C9—C10—C110.9 (3)
C2—N1—C1—N3−0.5 (2)C9—C10—C11—C120.3 (3)
C13—N1—C1—N3−162.89 (16)C10—C11—C12—C7−1.2 (3)
C2—N1—C1—N4179.17 (18)C8—C7—C12—C111.0 (3)
C13—N1—C1—N416.7 (3)C3—C7—C12—C11−173.87 (19)
N3—N2—C2—N5179.50 (18)C1—N1—C13—C1466.8 (2)
N3—N2—C2—N1−2.8 (2)C2—N1—C13—C14−91.5 (2)
C1—N1—C2—N22.2 (2)N1—C13—C14—O16.3 (2)
C13—N1—C2—N2163.37 (17)N1—C13—C14—C15−174.53 (15)
C1—N1—C2—N5179.90 (18)O1—C14—C15—C1613.9 (3)
C13—N1—C2—N5−18.9 (3)C13—C14—C15—C16−165.25 (18)
C1—N3—C3—C7−140.15 (18)O1—C14—C15—C20−165.57 (19)
N2—N3—C3—C744.8 (2)C13—C14—C15—C2015.3 (3)
C1—N3—C3—C4−19.3 (2)C20—C15—C16—C17−1.8 (3)
N2—N3—C3—C4165.59 (16)C14—C15—C16—C17178.8 (2)
N3—C3—C4—C546.9 (2)C15—C16—C17—C180.9 (3)
C7—C3—C4—C5169.40 (16)C16—C17—C18—C190.5 (3)
C1—N4—C5—C6163.01 (17)C17—C18—C19—C20−1.0 (3)
C1—N4—C5—C441.2 (2)C18—C19—C20—C150.2 (3)
C3—C4—C5—N4−59.0 (2)C16—C15—C20—C191.2 (3)
C3—C4—C5—C6−179.28 (17)C14—C15—C20—C19−179.30 (19)
D—H···AD—HH···AD···AD—H···A
N4—H3N···Br1i0.902.493.392 (2)176
N5—H1N···O1S0.901.942.839 (2)176
N5—H2N···Br1ii0.902.613.468 (2)159
O1S—H1S···Br10.852.463.287 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H3N⋯Br1i 0.902.493.392 (2)176
N5—H1N⋯O1S 0.901.942.839 (2)176
N5—H2N⋯Br1ii 0.902.613.468 (2)159
O1S—H1S⋯Br10.852.463.287 (2)165

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Improvement of the synthesis and pharmacokinetic properties of chromenotriazolopyrimidine MDM2-p53 protein-protein inhibitors.

Authors:  Hilary P Beck; Michael DeGraffenreid; Brian Fox; John G Allen; Yosup Rew; Stephen Schneider; Anne Y Saiki; Dongyin Yu; Jonathan D Oliner; Kevin Salyers; Qiuping Ye; Steven Olson
Journal:  Bioorg Med Chem Lett       Date:  2010-11-10       Impact factor: 2.823

3.  Synthesis of azoloquinazolinic systems using ultrasound.

Authors:  D Yu Sidorenko; V D Orlov
Journal:  Ultrason Sonochem       Date:  2010-06-30       Impact factor: 7.491

4.  3,5-Diamino-1-phenyl-1,2,4-triazolium bromide.

Authors:  V M Chernyshev; A V Astakhov; V V Ivanov; Z A Starikova
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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