Literature DB >> 21587549

4-{[5-(4-Chloro-phen-yl)-1-(4-fluoro-phen-yl)-1H-pyrazol-3-yl]carbon-yl}-N-(4-cyano-phen-yl)piperazine-1-carboxamide.

Wan-Sin Loh, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, M Venkatesh.   

Abstract

In the title compound, C(28)H(22)ClFN(6)O(2), the piperazine ring adopts a chair conformation and the least-squares plane through the four coplanar atoms forms dihedral angles of 69.37 (13) and 56.56 (12)°, respectively, with the pyrazole and cyano-phenyl rings. The dihedral angles formed between the pyrazole and the attached fluoro- and chloro-phenyl rings are 34.16 (10) and 73.27 (12)°, respectively. In the crystal, inter-molecular N-H⋯O, C-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into sheets parallel to the ac plane.

Entities:  

Year:  2010        PMID: 21587549      PMCID: PMC2983346          DOI: 10.1107/S1600536810036159

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrazole derivatives and their microbial activity, see: Ragavan et al. (2009 ▶, 2010 ▶). For the synthetic procedure, see: Ragavan et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Fun et al. (2010 ▶); Shahani et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C28H22ClFN6O2 M = 528.97 Monoclinic, a = 9.9221 (3) Å b = 21.3339 (7) Å c = 12.7201 (4) Å β = 111.629 (1)° V = 2502.97 (14) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.36 × 0.26 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.931, T max = 0.985 19192 measured reflections 5660 independent reflections 4272 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.116 S = 1.07 5660 reflections 347 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036159/wn2409sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036159/wn2409Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H22ClFN6O2F(000) = 1096
Mr = 528.97Dx = 1.404 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5338 reflections
a = 9.9221 (3) Åθ = 2.4–27.3°
b = 21.3339 (7) ŵ = 0.20 mm1
c = 12.7201 (4) ÅT = 100 K
β = 111.629 (1)°Plate, colourless
V = 2502.97 (14) Å30.36 × 0.26 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5660 independent reflections
Radiation source: fine-focus sealed tube4272 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 27.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→11
Tmin = 0.931, Tmax = 0.985k = −27→24
19192 measured reflectionsl = −14→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0294P)2 + 2.8225P] where P = (Fo2 + 2Fc2)/3
5660 reflections(Δ/σ)max < 0.001
347 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.47534 (7)0.60803 (3)0.78980 (5)0.03029 (16)
F10.48142 (15)0.22562 (7)0.89619 (12)0.0304 (3)
N10.81146 (19)0.34593 (9)0.69103 (14)0.0161 (4)
N20.89747 (19)0.31063 (9)0.65254 (14)0.0164 (4)
N31.04762 (19)0.34908 (9)0.44459 (14)0.0174 (4)
N41.0136 (2)0.35012 (9)0.21385 (15)0.0203 (4)
N51.1177 (2)0.35113 (10)0.07780 (16)0.0194 (4)
N61.2635 (2)0.45747 (11)−0.37105 (17)0.0335 (5)
O11.14153 (16)0.28689 (7)0.59902 (12)0.0193 (3)
O20.91589 (17)0.41027 (8)0.05706 (13)0.0236 (4)
C10.7918 (2)0.29390 (11)0.85563 (18)0.0197 (5)
H1A0.89050.29990.89480.024*
C20.7083 (2)0.26399 (11)0.90742 (19)0.0220 (5)
H2A0.74930.25030.98190.026*
C30.5637 (2)0.25525 (11)0.84547 (19)0.0216 (5)
C40.4962 (2)0.27504 (11)0.73509 (19)0.0228 (5)
H4A0.39780.26810.69590.027*
C50.5800 (2)0.30562 (11)0.68465 (18)0.0203 (5)
H5A0.53800.32000.61060.024*
C60.7266 (2)0.31466 (10)0.74509 (18)0.0163 (5)
C70.7134 (2)0.45597 (11)0.79798 (18)0.0209 (5)
H7A0.75930.42460.84940.025*
C80.6372 (2)0.50256 (11)0.82822 (19)0.0227 (5)
H8A0.63030.50210.89920.027*
C90.5715 (2)0.54962 (11)0.75187 (19)0.0213 (5)
C100.5806 (2)0.55132 (11)0.64628 (19)0.0218 (5)
H10A0.53650.58350.59610.026*
C110.6562 (2)0.50443 (11)0.61567 (18)0.0194 (5)
H11A0.66290.50540.54470.023*
C120.7220 (2)0.45589 (11)0.69021 (18)0.0177 (5)
C130.8020 (2)0.40700 (11)0.65574 (17)0.0166 (5)
C140.8854 (2)0.41079 (11)0.58986 (17)0.0176 (5)
H14A0.90070.44600.55260.021*
C150.9423 (2)0.35043 (11)0.59080 (17)0.0163 (5)
C161.0502 (2)0.32613 (10)0.54447 (17)0.0157 (4)
C171.1727 (2)0.33981 (11)0.41143 (18)0.0192 (5)
H17A1.24160.31200.46520.023*
H17B1.22040.37970.41340.023*
C181.1283 (2)0.31192 (11)0.29329 (17)0.0205 (5)
H18A1.21120.31070.27030.025*
H18B1.09390.26940.29340.025*
C190.8884 (2)0.35880 (11)0.24632 (18)0.0202 (5)
H19A0.84190.31870.24490.024*
H19B0.81890.38610.19210.024*
C200.9325 (2)0.38715 (11)0.36402 (17)0.0195 (5)
H20A0.96680.42970.36340.023*
H20B0.84930.38860.38670.023*
C211.0089 (2)0.37302 (11)0.11281 (18)0.0179 (5)
C221.1497 (2)0.37577 (11)−0.01271 (17)0.0185 (5)
C231.2352 (3)0.33979 (11)−0.05514 (19)0.0235 (5)
H23A1.26880.3009−0.02300.028*
C241.2707 (3)0.36094 (12)−0.1441 (2)0.0261 (5)
H24A1.32680.3361−0.17220.031*
C251.2229 (2)0.41924 (11)−0.19194 (18)0.0204 (5)
C261.1417 (3)0.45604 (12)−0.1474 (2)0.0255 (5)
H26A1.11150.4956−0.17750.031*
C271.1050 (3)0.43481 (11)−0.0591 (2)0.0247 (5)
H27A1.05020.4600−0.03040.030*
C281.2494 (3)0.44038 (12)−0.29033 (19)0.0242 (5)
H1N51.148 (3)0.3133 (14)0.098 (2)0.033 (8)*
U11U22U33U12U13U23
Cl10.0278 (3)0.0295 (4)0.0347 (3)0.0067 (3)0.0129 (3)−0.0071 (3)
F10.0281 (8)0.0372 (9)0.0311 (8)−0.0038 (7)0.0170 (6)0.0075 (7)
N10.0167 (9)0.0172 (10)0.0156 (9)0.0006 (8)0.0074 (7)0.0003 (8)
N20.0161 (9)0.0184 (10)0.0156 (9)−0.0001 (8)0.0069 (7)−0.0017 (8)
N30.0154 (9)0.0217 (10)0.0151 (9)0.0004 (8)0.0056 (7)0.0006 (8)
N40.0192 (10)0.0268 (11)0.0163 (9)0.0060 (8)0.0081 (7)0.0040 (8)
N50.0244 (11)0.0174 (11)0.0190 (9)0.0042 (9)0.0110 (8)0.0024 (8)
N60.0404 (13)0.0391 (14)0.0255 (11)−0.0110 (11)0.0175 (10)−0.0008 (10)
O10.0193 (8)0.0207 (9)0.0175 (8)0.0024 (7)0.0063 (6)0.0022 (7)
O20.0264 (9)0.0278 (10)0.0190 (8)0.0088 (7)0.0111 (7)0.0068 (7)
C10.0176 (11)0.0217 (13)0.0187 (11)0.0025 (9)0.0055 (9)0.0024 (9)
C20.0236 (12)0.0258 (14)0.0167 (11)0.0039 (10)0.0076 (9)0.0062 (10)
C30.0255 (13)0.0209 (13)0.0237 (11)−0.0025 (10)0.0153 (10)0.0007 (10)
C40.0152 (11)0.0278 (14)0.0241 (12)−0.0018 (10)0.0058 (9)−0.0017 (10)
C50.0214 (12)0.0241 (13)0.0148 (10)0.0016 (10)0.0060 (9)0.0011 (10)
C60.0191 (11)0.0147 (11)0.0176 (10)0.0008 (9)0.0096 (9)−0.0004 (9)
C70.0233 (12)0.0220 (13)0.0165 (10)0.0017 (10)0.0062 (9)−0.0002 (10)
C80.0253 (12)0.0255 (13)0.0190 (11)−0.0005 (10)0.0102 (9)−0.0040 (10)
C90.0162 (11)0.0194 (12)0.0279 (12)−0.0015 (9)0.0076 (9)−0.0064 (10)
C100.0188 (12)0.0188 (13)0.0262 (12)0.0011 (10)0.0063 (9)0.0028 (10)
C110.0179 (11)0.0211 (13)0.0189 (10)−0.0033 (9)0.0064 (8)−0.0005 (9)
C120.0167 (11)0.0170 (12)0.0198 (10)−0.0033 (9)0.0073 (8)−0.0043 (9)
C130.0172 (11)0.0173 (12)0.0131 (10)−0.0010 (9)0.0030 (8)−0.0008 (9)
C140.0192 (11)0.0181 (12)0.0163 (10)−0.0030 (9)0.0076 (9)−0.0009 (9)
C150.0167 (11)0.0185 (12)0.0124 (10)−0.0027 (9)0.0038 (8)−0.0016 (9)
C160.0160 (11)0.0164 (12)0.0139 (10)−0.0046 (9)0.0045 (8)−0.0041 (9)
C170.0164 (11)0.0245 (13)0.0170 (10)−0.0016 (9)0.0066 (9)0.0003 (10)
C180.0201 (12)0.0274 (13)0.0154 (10)0.0049 (10)0.0083 (9)0.0025 (10)
C190.0177 (11)0.0265 (13)0.0165 (10)0.0026 (10)0.0064 (9)0.0027 (10)
C200.0192 (11)0.0226 (13)0.0176 (10)0.0035 (10)0.0080 (9)0.0020 (9)
C210.0185 (11)0.0184 (12)0.0164 (10)−0.0021 (9)0.0060 (9)−0.0023 (9)
C220.0207 (12)0.0224 (13)0.0119 (10)−0.0030 (10)0.0056 (8)−0.0028 (9)
C230.0296 (13)0.0205 (13)0.0227 (11)0.0054 (10)0.0124 (10)0.0034 (10)
C240.0289 (13)0.0304 (15)0.0233 (12)0.0052 (11)0.0146 (10)−0.0003 (11)
C250.0220 (12)0.0234 (13)0.0161 (10)−0.0040 (10)0.0076 (9)−0.0015 (9)
C260.0349 (14)0.0199 (13)0.0250 (12)0.0020 (11)0.0150 (10)0.0028 (10)
C270.0339 (14)0.0200 (13)0.0259 (12)0.0034 (11)0.0179 (11)0.0004 (10)
C280.0252 (13)0.0265 (14)0.0203 (12)−0.0063 (10)0.0077 (10)−0.0034 (10)
Cl1—C91.742 (2)C8—H8A0.9300
F1—C31.367 (2)C9—C101.379 (3)
N1—N21.358 (2)C10—C111.389 (3)
N1—C131.370 (3)C10—H10A0.9300
N1—C61.433 (3)C11—C121.393 (3)
N2—C151.339 (3)C11—H11A0.9300
N3—C161.353 (3)C12—C131.472 (3)
N3—C171.464 (3)C13—C141.380 (3)
N3—C201.467 (3)C14—C151.405 (3)
N4—C211.360 (3)C14—H14A0.9300
N4—C191.458 (3)C15—C161.492 (3)
N4—C181.460 (3)C17—C181.523 (3)
N5—C211.392 (3)C17—H17A0.9700
N5—C221.404 (3)C17—H17B0.9700
N5—H1N50.87 (3)C18—H18A0.9700
N6—C281.146 (3)C18—H18B0.9700
O1—C161.241 (3)C19—C201.522 (3)
O2—C211.226 (3)C19—H19A0.9700
C1—C61.386 (3)C19—H19B0.9700
C1—C21.389 (3)C20—H20A0.9700
C1—H1A0.9300C20—H20B0.9700
C2—C31.372 (3)C22—C231.392 (3)
C2—H2A0.9300C22—C271.392 (3)
C3—C41.380 (3)C23—C241.380 (3)
C4—C51.386 (3)C23—H23A0.9300
C4—H4A0.9300C24—C251.389 (3)
C5—C61.386 (3)C24—H24A0.9300
C5—H5A0.9300C25—C261.387 (3)
C7—C81.387 (3)C25—C281.443 (3)
C7—C121.404 (3)C26—C271.378 (3)
C7—H7A0.9300C26—H26A0.9300
C8—C91.382 (3)C27—H27A0.9300
N2—N1—C13112.69 (17)C15—C14—H14A127.2
N2—N1—C6118.25 (17)N2—C15—C14111.51 (18)
C13—N1—C6128.21 (18)N2—C15—C16116.95 (19)
C15—N2—N1104.40 (17)C14—C15—C16131.30 (19)
C16—N3—C17119.79 (18)O1—C16—N3121.78 (19)
C16—N3—C20126.63 (18)O1—C16—C15119.71 (18)
C17—N3—C20113.48 (17)N3—C16—C15118.49 (19)
C21—N4—C19119.10 (18)N3—C17—C18111.66 (17)
C21—N4—C18126.94 (18)N3—C17—H17A109.3
C19—N4—C18113.76 (17)C18—C17—H17A109.3
C21—N5—C22125.0 (2)N3—C17—H17B109.3
C21—N5—H1N5116.6 (18)C18—C17—H17B109.3
C22—N5—H1N5115.4 (18)H17A—C17—H17B108.0
C6—C1—C2119.4 (2)N4—C18—C17109.47 (18)
C6—C1—H1A120.3N4—C18—H18A109.8
C2—C1—H1A120.3C17—C18—H18A109.8
C3—C2—C1118.1 (2)N4—C18—H18B109.8
C3—C2—H2A121.0C17—C18—H18B109.8
C1—C2—H2A121.0H18A—C18—H18B108.2
F1—C3—C2118.2 (2)N4—C19—C20111.31 (18)
F1—C3—C4118.1 (2)N4—C19—H19A109.4
C2—C3—C4123.7 (2)C20—C19—H19A109.4
C3—C4—C5117.8 (2)N4—C19—H19B109.4
C3—C4—H4A121.1C20—C19—H19B109.4
C5—C4—H4A121.1H19A—C19—H19B108.0
C6—C5—C4119.7 (2)N3—C20—C19109.55 (18)
C6—C5—H5A120.2N3—C20—H20A109.8
C4—C5—H5A120.2C19—C20—H20A109.8
C5—C6—C1121.3 (2)N3—C20—H20B109.8
C5—C6—N1118.75 (19)C19—C20—H20B109.8
C1—C6—N1119.91 (19)H20A—C20—H20B108.2
C8—C7—C12120.5 (2)O2—C21—N4122.4 (2)
C8—C7—H7A119.8O2—C21—N5122.7 (2)
C12—C7—H7A119.8N4—C21—N5114.94 (19)
C9—C8—C7119.3 (2)C23—C22—C27118.6 (2)
C9—C8—H8A120.3C23—C22—N5117.7 (2)
C7—C8—H8A120.3C27—C22—N5123.6 (2)
C10—C9—C8121.4 (2)C24—C23—C22121.0 (2)
C10—C9—Cl1119.32 (18)C24—C23—H23A119.5
C8—C9—Cl1119.31 (18)C22—C23—H23A119.5
C9—C10—C11119.3 (2)C23—C24—C25120.2 (2)
C9—C10—H10A120.3C23—C24—H24A119.9
C11—C10—H10A120.3C25—C24—H24A119.9
C10—C11—C12120.7 (2)C26—C25—C24119.0 (2)
C10—C11—H11A119.7C26—C25—C28119.8 (2)
C12—C11—H11A119.7C24—C25—C28121.2 (2)
C11—C12—C7118.8 (2)C27—C26—C25121.0 (2)
C11—C12—C13119.52 (19)C27—C26—H26A119.5
C7—C12—C13121.7 (2)C25—C26—H26A119.5
N1—C13—C14105.71 (19)C26—C27—C22120.3 (2)
N1—C13—C12123.74 (19)C26—C27—H27A119.9
C14—C13—C12130.5 (2)C22—C27—H27A119.9
C13—C14—C15105.69 (19)N6—C28—C25176.8 (3)
C13—C14—H14A127.2
C13—N1—N2—C15−0.5 (2)C13—C14—C15—N20.4 (2)
C6—N1—N2—C15169.86 (18)C13—C14—C15—C16−173.7 (2)
C6—C1—C2—C31.1 (3)C17—N3—C16—O1−14.7 (3)
C1—C2—C3—F1179.8 (2)C20—N3—C16—O1169.2 (2)
C1—C2—C3—C4−0.7 (4)C17—N3—C16—C15163.51 (19)
F1—C3—C4—C5179.3 (2)C20—N3—C16—C15−12.6 (3)
C2—C3—C4—C5−0.2 (4)N2—C15—C16—O1−33.1 (3)
C3—C4—C5—C60.7 (3)C14—C15—C16—O1140.7 (2)
C4—C5—C6—C1−0.2 (3)N2—C15—C16—N3148.6 (2)
C4—C5—C6—N1179.5 (2)C14—C15—C16—N3−37.6 (3)
C2—C1—C6—C5−0.7 (3)C16—N3—C17—C18128.3 (2)
C2—C1—C6—N1179.6 (2)C20—N3—C17—C18−55.1 (3)
N2—N1—C6—C5−102.4 (2)C21—N4—C18—C17130.4 (2)
C13—N1—C6—C566.2 (3)C19—N4—C18—C17−54.9 (2)
N2—N1—C6—C177.3 (3)N3—C17—C18—N453.1 (2)
C13—N1—C6—C1−114.1 (2)C21—N4—C19—C20−128.6 (2)
C12—C7—C8—C9−1.1 (3)C18—N4—C19—C2056.3 (3)
C7—C8—C9—C10−0.2 (4)C16—N3—C20—C19−129.4 (2)
C7—C8—C9—Cl1179.84 (18)C17—N3—C20—C1954.4 (2)
C8—C9—C10—C110.6 (3)N4—C19—C20—N3−53.7 (2)
Cl1—C9—C10—C11−179.42 (17)C19—N4—C21—O213.6 (3)
C9—C10—C11—C120.3 (3)C18—N4—C21—O2−172.0 (2)
C10—C11—C12—C7−1.5 (3)C19—N4—C21—N5−166.6 (2)
C10—C11—C12—C13−179.7 (2)C18—N4—C21—N57.9 (3)
C8—C7—C12—C111.9 (3)C22—N5—C21—O211.2 (3)
C8—C7—C12—C13−179.9 (2)C22—N5—C21—N4−168.7 (2)
N2—N1—C13—C140.7 (2)C21—N5—C22—C23−164.2 (2)
C6—N1—C13—C14−168.42 (19)C21—N5—C22—C2718.1 (3)
N2—N1—C13—C12−176.73 (18)C27—C22—C23—C24−2.4 (4)
C6—N1—C13—C1214.1 (3)N5—C22—C23—C24179.8 (2)
C11—C12—C13—N1−148.1 (2)C22—C23—C24—C250.9 (4)
C7—C12—C13—N133.7 (3)C23—C24—C25—C261.2 (4)
C11—C12—C13—C1435.1 (3)C23—C24—C25—C28−175.3 (2)
C7—C12—C13—C14−143.0 (2)C24—C25—C26—C27−1.8 (4)
N1—C13—C14—C15−0.6 (2)C28—C25—C26—C27174.8 (2)
C12—C13—C14—C15176.6 (2)C25—C26—C27—C220.2 (4)
N1—N2—C15—C140.0 (2)C23—C22—C27—C261.8 (3)
N1—N2—C15—C16175.01 (17)N5—C22—C27—C26179.4 (2)
D—H···AD—HH···AD···AD—H···A
N5—H1N5···O1i0.87 (3)2.14 (3)2.958 (3)157 (2)
C2—H2A···N2ii0.932.493.386 (3)161
C4—H4A···O1iii0.932.423.310 (3)161
C7—H7A···O2iv0.932.543.312 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H1N5⋯O1i0.87 (3)2.14 (3)2.958 (3)157 (2)
C2—H2A⋯N2ii0.932.493.386 (3)161
C4—H4A⋯O1iii0.932.423.310 (3)161
C7—H7A⋯O2iv0.932.543.312 (3)140

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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