Literature DB >> 21587490

4-[(E)-(4-Hy-droxy-2-oxo-2H-chromen-3-yl)methyl-idene-amino]-1,5-dimethyl-2-phenyl-1H-pyrazol-3(2H)-one monohydrate.

Mohammad Asad, Chuan-Wei Oo, Hasnah Osman, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(21)H(17)N(3)O(4)·H(2)O, the coumarin ring system is almost planar (r.m.s. deviation = 0.002 Å) and makes dihedral angles of 1.50 (7) and 57.75 (7)° with the pyrazole and phenyl rings, respectively. The dihedral angle between the pyrazole and phenyl rings is 56.60 (9)°. The pyrazole ring adopts a twisted comformation. The mol-ecular conformation is stabilized by intra-molecular N-H⋯O and C-H⋯O hydrogen bonds, both of which form S(6) ring motifs. In the crystal, each water mol-ecule is linked to its adjacent organic mol-ecule via pairs of O-H⋯O hydrogen bonds. The packing is further consolidated by pairs of inter-molecular C-H⋯O hydrogen bonds, which link the mol-ecules into dimers; the dimers are stacked along the b axis.

Entities:  

Year:  2010        PMID: 21587490      PMCID: PMC2983131          DOI: 10.1107/S160053681003480X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and biological activity of pyran­ocoumarin and substituted coumarin derivatives, see: Aries (1974 ▶); da Silva et al. (2009 ▶); Huang et al. (2010 ▶); Skulnick et al. (1997 ▶); Spino et al. (1998 ▶); Kokil et al. (2010 ▶); Abdelhafez et al. (2010 ▶); Honmantgad et al. (1985 ▶); Delporte et al. (1998 ▶); Ibrahim et al. (2006 ▶); Bissonnette et al. (2009 ▶). For a related structure, see: Arshad et al. (2010 ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H17N3O4·H2O M = 393.39 Monoclinic, a = 35.225 (4) Å b = 6.4269 (7) Å c = 17.6163 (18) Å β = 108.008 (3)° V = 3792.7 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.19 × 0.13 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.981, T max = 0.989 35398 measured reflections 5044 independent reflections 3412 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.172 S = 1.03 5044 reflections 268 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003480X/hb5618sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003480X/hb5618Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H17N3O4·H2OF(000) = 1648
Mr = 393.39Dx = 1.378 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6036 reflections
a = 35.225 (4) Åθ = 2.4–29.9°
b = 6.4269 (7) ŵ = 0.10 mm1
c = 17.6163 (18) ÅT = 100 K
β = 108.008 (3)°Block, yellow
V = 3792.7 (7) Å30.19 × 0.13 × 0.12 mm
Z = 8
Bruker SMART APEXII CCD area-detector diffractometer5044 independent reflections
Radiation source: fine-focus sealed tube3412 reflections with I > 2σ(I)
graphiteRint = 0.052
φ and ω scansθmax = 29.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −47→48
Tmin = 0.981, Tmax = 0.989k = −8→8
35398 measured reflectionsl = −23→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.172H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0911P)2 + 2.8654P] where P = (Fo2 + 2Fc2)/3
5044 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.66 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.00970 (3)0.25568 (17)0.35782 (6)0.0201 (3)
O20.07480 (4)0.2578 (2)0.41212 (7)0.0269 (3)
O3−0.00816 (3)0.24563 (17)0.57775 (6)0.0212 (3)
O40.15875 (3)0.2277 (2)0.65776 (7)0.0275 (3)
N10.06937 (4)0.24627 (19)0.64206 (7)0.0160 (3)
N20.13874 (4)0.2275 (2)0.83849 (8)0.0246 (3)
N30.16474 (4)0.2441 (2)0.79281 (8)0.0258 (3)
C10.04266 (5)0.2552 (2)0.42474 (9)0.0183 (3)
C2−0.02838 (5)0.2533 (2)0.36347 (9)0.0173 (3)
C3−0.05929 (5)0.2540 (2)0.29108 (9)0.0210 (3)
H3A−0.05370.25600.24280.025*
C4−0.09821 (5)0.2515 (2)0.29271 (10)0.0239 (3)
H4A−0.11910.25170.24500.029*
C5−0.10675 (5)0.2486 (3)0.36506 (10)0.0245 (3)
H5A−0.13310.24710.36540.029*
C6−0.07578 (5)0.2482 (2)0.43627 (10)0.0207 (3)
H6A−0.08150.24620.48440.025*
C7−0.03600 (4)0.2507 (2)0.43656 (9)0.0170 (3)
C8−0.00234 (5)0.2493 (2)0.51080 (9)0.0160 (3)
C90.03653 (4)0.2519 (2)0.50194 (8)0.0155 (3)
C100.07103 (5)0.2515 (2)0.56840 (9)0.0170 (3)
H10A0.09590.25510.56020.020*
C110.10243 (4)0.2456 (2)0.71053 (8)0.0169 (3)
C120.10082 (5)0.2418 (2)0.78734 (9)0.0188 (3)
C130.14344 (5)0.2403 (3)0.71201 (9)0.0202 (3)
C140.20606 (5)0.1917 (3)0.82639 (10)0.0273 (4)
C150.21734 (6)0.0144 (4)0.87239 (12)0.0404 (5)
H15A0.1982−0.07130.88260.048*
C160.25772 (6)−0.0340 (4)0.90322 (13)0.0462 (5)
H16A0.2657−0.15260.93430.055*
C170.28592 (5)0.0944 (4)0.88758 (11)0.0376 (5)
H17A0.31290.06060.90740.045*
C180.27429 (6)0.2720 (4)0.84276 (12)0.0389 (5)
H18A0.29350.35890.83340.047*
C190.23402 (5)0.3225 (3)0.81140 (11)0.0348 (4)
H19A0.22610.44220.78090.042*
C200.06538 (5)0.2483 (3)0.81601 (10)0.0260 (4)
H20A0.06600.13150.85040.039*
H20B0.04150.24270.77120.039*
H20C0.06570.37510.84500.039*
C210.15162 (6)0.3240 (4)0.91767 (10)0.0374 (5)
H21A0.13230.29620.94460.056*
H21B0.15410.47160.91220.056*
H21C0.17700.26740.94820.056*
O1W0.15736 (5)0.1509 (3)0.49339 (10)0.0663 (6)
H1OW0.15800.16240.54290.099*
H2OW0.13170.17660.47410.099*
H1N10.0428 (7)0.242 (3)0.6406 (15)0.042 (7)*
U11U22U33U12U13U23
O10.0195 (5)0.0275 (6)0.0130 (5)−0.0004 (4)0.0046 (4)0.0006 (4)
O20.0213 (6)0.0427 (8)0.0191 (5)−0.0003 (5)0.0096 (4)0.0011 (5)
O30.0200 (5)0.0289 (6)0.0164 (5)0.0001 (5)0.0080 (4)−0.0006 (4)
O40.0190 (6)0.0454 (8)0.0194 (5)−0.0011 (5)0.0078 (4)0.0002 (5)
N10.0158 (6)0.0177 (6)0.0136 (6)−0.0001 (5)0.0033 (5)0.0000 (4)
N20.0210 (7)0.0384 (9)0.0141 (6)0.0003 (6)0.0051 (5)−0.0001 (5)
N30.0172 (6)0.0425 (9)0.0164 (6)0.0005 (6)0.0033 (5)0.0015 (6)
C10.0197 (7)0.0196 (7)0.0153 (6)−0.0004 (6)0.0049 (5)−0.0002 (5)
C20.0186 (7)0.0155 (7)0.0171 (7)0.0002 (6)0.0043 (5)0.0008 (5)
C30.0241 (8)0.0187 (7)0.0170 (7)−0.0006 (6)0.0018 (6)0.0003 (6)
C40.0227 (8)0.0184 (7)0.0239 (8)0.0011 (6)−0.0023 (6)0.0000 (6)
C50.0173 (7)0.0221 (8)0.0308 (8)−0.0003 (6)0.0025 (6)−0.0011 (6)
C60.0197 (7)0.0200 (8)0.0224 (7)0.0002 (6)0.0065 (6)−0.0007 (6)
C70.0188 (7)0.0150 (7)0.0163 (6)0.0005 (6)0.0039 (5)0.0000 (5)
C80.0188 (7)0.0147 (7)0.0154 (6)−0.0001 (5)0.0065 (5)−0.0003 (5)
C90.0170 (7)0.0163 (7)0.0133 (6)−0.0004 (5)0.0048 (5)−0.0002 (5)
C100.0180 (7)0.0166 (7)0.0166 (6)−0.0007 (6)0.0056 (5)0.0005 (5)
C110.0167 (7)0.0183 (7)0.0145 (6)−0.0005 (6)0.0030 (5)−0.0001 (5)
C120.0190 (7)0.0210 (7)0.0158 (6)0.0002 (6)0.0046 (5)0.0002 (5)
C130.0178 (7)0.0259 (8)0.0158 (7)−0.0009 (6)0.0037 (5)0.0009 (6)
C140.0185 (8)0.0411 (10)0.0191 (7)−0.0001 (7)0.0010 (6)−0.0022 (7)
C150.0260 (9)0.0465 (12)0.0448 (11)−0.0014 (8)0.0052 (8)0.0132 (9)
C160.0326 (11)0.0538 (14)0.0462 (12)0.0088 (10)0.0034 (9)0.0155 (10)
C170.0217 (8)0.0586 (13)0.0287 (9)0.0060 (9)0.0022 (7)−0.0027 (9)
C180.0220 (9)0.0563 (14)0.0369 (10)−0.0061 (8)0.0071 (8)−0.0008 (9)
C190.0251 (9)0.0437 (11)0.0333 (9)−0.0014 (8)0.0056 (7)0.0051 (8)
C200.0256 (8)0.0354 (9)0.0197 (7)0.0016 (7)0.0112 (6)−0.0004 (7)
C210.0329 (10)0.0572 (13)0.0189 (8)−0.0017 (9)0.0032 (7)−0.0078 (8)
O1W0.0463 (10)0.1070 (17)0.0457 (9)0.0156 (10)0.0145 (8)−0.0139 (10)
O1—C11.3753 (18)C8—C91.425 (2)
O1—C21.3755 (19)C9—C101.403 (2)
O2—C11.219 (2)C10—H10A0.9300
O3—C81.2583 (17)C11—C121.3718 (19)
O4—C131.2367 (19)C11—C131.437 (2)
N1—C101.3175 (19)C12—C201.485 (2)
N1—C111.3937 (18)C14—C191.381 (3)
N1—H1N10.93 (2)C14—C151.383 (3)
N2—C121.364 (2)C15—C161.392 (3)
N2—N31.3977 (19)C15—H15A0.9300
N2—C211.465 (2)C16—C171.383 (3)
N3—C131.3890 (19)C16—H16A0.9300
N3—C141.432 (2)C17—C181.376 (3)
C1—C91.4416 (19)C17—H17A0.9300
C2—C71.394 (2)C18—C191.392 (3)
C2—C31.398 (2)C18—H18A0.9300
C3—C41.380 (2)C19—H19A0.9300
C3—H3A0.9300C20—H20A0.9600
C4—C51.397 (2)C20—H20B0.9600
C4—H4A0.9300C20—H20C0.9600
C5—C61.385 (2)C21—H21A0.9600
C5—H5A0.9300C21—H21B0.9600
C6—C71.400 (2)C21—H21C0.9600
C6—H6A0.9300O1W—H1OW0.8673
C7—C81.469 (2)O1W—H2OW0.8763
C1—O1—C2121.45 (12)C12—C11—N1125.13 (14)
C10—N1—C11124.94 (14)C12—C11—C13109.24 (13)
C10—N1—H1N1109.0 (16)N1—C11—C13125.59 (13)
C11—N1—H1N1126.1 (16)N2—C12—C11108.80 (14)
C12—N2—N3107.25 (12)N2—C12—C20122.12 (14)
C12—N2—C21123.53 (15)C11—C12—C20129.07 (14)
N3—N2—C21116.80 (14)O4—C13—N3124.51 (15)
C13—N3—N2110.25 (13)O4—C13—C11131.58 (14)
C13—N3—C14125.28 (14)N3—C13—C11103.87 (13)
N2—N3—C14120.50 (13)C19—C14—C15121.39 (17)
O2—C1—O1115.41 (13)C19—C14—N3118.14 (17)
O2—C1—C9126.19 (14)C15—C14—N3120.47 (17)
O1—C1—C9118.40 (13)C14—C15—C16119.12 (19)
O1—C2—C7122.50 (13)C14—C15—H15A120.4
O1—C2—C3115.85 (14)C16—C15—H15A120.4
C7—C2—C3121.64 (15)C17—C16—C15119.9 (2)
C4—C3—C2118.66 (15)C17—C16—H16A120.0
C4—C3—H3A120.7C15—C16—H16A120.0
C2—C3—H3A120.7C18—C17—C16120.30 (18)
C3—C4—C5120.96 (14)C18—C17—H17A119.9
C3—C4—H4A119.5C16—C17—H17A119.9
C5—C4—H4A119.5C17—C18—C19120.48 (19)
C6—C5—C4119.67 (15)C17—C18—H18A119.8
C6—C5—H5A120.2C19—C18—H18A119.8
C4—C5—H5A120.2C14—C19—C18118.77 (19)
C5—C6—C7120.71 (15)C14—C19—H19A120.6
C5—C6—H6A119.6C18—C19—H19A120.6
C7—C6—H6A119.6C12—C20—H20A109.5
C2—C7—C6118.36 (14)C12—C20—H20B109.5
C2—C7—C8119.30 (14)H20A—C20—H20B109.5
C6—C7—C8122.34 (14)C12—C20—H20C109.5
O3—C8—C9122.90 (14)H20A—C20—H20C109.5
O3—C8—C7120.93 (14)H20B—C20—H20C109.5
C9—C8—C7116.16 (13)N2—C21—H21A109.5
C10—C9—C8121.49 (13)N2—C21—H21B109.5
C10—C9—C1116.33 (13)H21A—C21—H21B109.5
C8—C9—C1122.18 (13)N2—C21—H21C109.5
N1—C10—C9122.09 (14)H21A—C21—H21C109.5
N1—C10—H10A119.0H21B—C21—H21C109.5
C9—C10—H10A119.0H1OW—O1W—H2OW94.6
C12—N2—N3—C13−8.12 (18)C8—C9—C10—N10.8 (2)
C21—N2—N3—C13−151.71 (16)C1—C9—C10—N1−179.23 (14)
C12—N2—N3—C14−166.83 (15)C10—N1—C11—C12179.45 (15)
C21—N2—N3—C1449.6 (2)C10—N1—C11—C13−3.2 (2)
C2—O1—C1—O2−179.86 (13)N3—N2—C12—C116.06 (18)
C2—O1—C1—C90.1 (2)C21—N2—C12—C11146.60 (17)
C1—O1—C2—C70.1 (2)N3—N2—C12—C20−174.70 (15)
C1—O1—C2—C3−179.95 (13)C21—N2—C12—C20−34.2 (3)
O1—C2—C3—C4179.93 (13)N1—C11—C12—N2175.77 (14)
C7—C2—C3—C4−0.1 (2)C13—C11—C12—N2−1.98 (18)
C2—C3—C4—C50.1 (2)N1—C11—C12—C20−3.4 (3)
C3—C4—C5—C60.0 (2)C13—C11—C12—C20178.85 (16)
C4—C5—C6—C70.1 (2)N2—N3—C13—O4−171.06 (16)
O1—C2—C7—C6−179.92 (13)C14—N3—C13—O4−13.6 (3)
C3—C2—C7—C60.1 (2)N2—N3—C13—C116.66 (17)
O1—C2—C7—C8−0.3 (2)C14—N3—C13—C11164.13 (16)
C3—C2—C7—C8179.73 (14)C12—C11—C13—O4174.61 (18)
C5—C6—C7—C2−0.1 (2)N1—C11—C13—O4−3.1 (3)
C5—C6—C7—C8−179.68 (15)C12—C11—C13—N3−2.89 (17)
C2—C7—C8—O3−179.56 (14)N1—C11—C13—N3179.38 (14)
C6—C7—C8—O30.0 (2)C13—N3—C14—C1968.3 (2)
C2—C7—C8—C90.3 (2)N2—N3—C14—C19−136.40 (18)
C6—C7—C8—C9179.91 (14)C13—N3—C14—C15−111.6 (2)
O3—C8—C9—C10−0.3 (2)N2—N3—C14—C1543.7 (2)
C7—C8—C9—C10179.79 (13)C19—C14—C15—C16−0.9 (3)
O3—C8—C9—C1179.74 (14)N3—C14—C15—C16179.04 (19)
C7—C8—C9—C1−0.2 (2)C14—C15—C16—C17−0.1 (3)
O2—C1—C9—C10−0.1 (2)C15—C16—C17—C181.1 (3)
O1—C1—C9—C10180.00 (13)C16—C17—C18—C19−1.2 (3)
O2—C1—C9—C8179.89 (15)C15—C14—C19—C180.8 (3)
O1—C1—C9—C80.0 (2)N3—C14—C19—C18−179.13 (17)
C11—N1—C10—C9180.00 (14)C17—C18—C19—C140.3 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1OW···O40.872.062.923 (2)173
O1W—H2OW···O20.882.032.899 (2)170
N1—H1N1···O30.93 (3)1.79 (3)2.6132 (18)146 (2)
C3—H3A···O2i0.932.603.450 (2)153
C10—H10A···O40.932.353.007 (2)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1OW⋯O40.872.062.923 (2)173
O1W—H2OW⋯O20.882.032.899 (2)170
N1—H1N1⋯O30.93 (3)1.79 (3)2.6132 (18)146 (2)
C3—H3A⋯O2i0.932.603.450 (2)153
C10—H10A⋯O40.932.353.007 (2)127

Symmetry code: (i) .

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Authors:  H I Skulnick; P D Johnson; P A Aristoff; J K Morris; K D Lovasz; W J Howe; K D Watenpaugh; M N Janakiraman; D J Anderson; R J Reischer; T M Schwartz; L S Banitt; P K Tomich; J C Lynn; M M Horng; K T Chong; R R Hinshaw; L A Dolak; E P Seest; F J Schwende; B D Rush; G M Howard; L N Toth; K R Wilkinson; K R Romines
Journal:  J Med Chem       Date:  1997-03-28       Impact factor: 7.446

6.  Coumarinic derivatives show anti-inflammatory effects on alveolar macrophages, but their anti-elastase activity is essential to reduce lung inflammation in vivo.

Authors:  Elyse Y Bissonnette; Guy M Tremblay; Véronique Turmel; Bernard Pirotte; Michèle Reboud-Ravaux
Journal:  Int Immunopharmacol       Date:  2008-10-07       Impact factor: 4.932

7.  Psoralen and bergapten: in silico metabolism and toxicophoric analysis of drugs used to treat vitiligo.

Authors:  Vinicius Barreto da Silva; Daniel Fábio Kawano; Ivone Carvalho; Edemilson Cardoso da Conceição; Osvaldo de Freitas; Carlos Henrique Tomich de Paula da Silva
Journal:  J Pharm Pharm Sci       Date:  2009       Impact factor: 2.327

8.  3-{2-[2-(2-Fluoro-benzyl-idene)hydrazin-yl]-1,3-thia-zol-4-yl}-2H-chromen-2-one.

Authors:  Afsheen Arshad; Hasnah Osman; Chan Kit Lam; Ching Kheng Quah; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-26

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  1 in total

1.  3-[(E)-3-(2,4-Dichloro-phen-yl)prop-2-en-oyl]-4-hy-droxy-2H-chromen-2-one.

Authors:  Mohammad Asad; Chuan-Wei Oo; Hasnah Osman; Ching Kheng Quah; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31
  1 in total

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