Literature DB >> 21583038

Bis(di-2-pyridylmethane-diol-κN,O,N')nickel(II) dinitrate.

Seung Man Yu, Young Joo Song, Kang Chul Kim, Cheal Kim, Youngmee Kim.   

Abstract

The title compound, [Ni(C(11)H(10)N(2)O(2))(2)](NO(3))(2), consists of an Ni(II) atom coordinated by two tridentate chelating di-2-pyridylmethane-diol [(2-py)(2)C(OH)(2)] ligands. The Ni(II) atom is located on an inversion center. The geometry around the Ni(II) atom is distorted octa-hedral. The gem-diol (2-py)(2)C(OH)(2) ligand adopts the coordination mode η(1):η(1):η(1). The Ni-N and Ni-O bond lengths are typical for high-spin Ni(II) in an octa-hedral environment [Ni-N = 2.094 (2) and 2.124 (3) Å, and Ni-O = 2.108 (3) Å]. One of the hydr-oxy H atoms is split over two positions which both inter-act with the nitrate anion. The occurence of different O-H⋯O hydrogen bonds leads to the formation of a layer parallel to the (101) plane.

Entities:  

Year:  2009        PMID: 21583038      PMCID: PMC2969811          DOI: 10.1107/S1600536809018728

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Efthymiou et al. (2006 ▶); Moragues-Cánovas et al. (2004 ▶); Papaefstathiou & Perlepes (2002 ▶); Papatriantafyllopoulou et al. (2007 ▶); Stoumpos et al. (2008 ▶, 2009 ▶). For related structures, see: Li et al. (2005 ▶); Wang et al. (1986 ▶).

Experimental

Crystal data

[Ni(C11H10N2O2)2](NO3)2 M = 587.15 Monoclinic, a = 8.4077 (9) Å b = 15.5098 (16) Å c = 9.5556 (10) Å β = 94.644 (2)° V = 1242.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.85 mm−1 T = 293 K 0.20 × 0.10 × 0.03 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 7646 measured reflections 2442 independent reflections 1826 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.135 S = 1.06 2442 reflections 179 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.59 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018728/dn2454sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018728/dn2454Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C11H10N2O2)2](NO3)2F(000) = 604
Mr = 587.15Dx = 1.570 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2352 reflections
a = 8.4077 (9) Åθ = 2.5–25.6°
b = 15.5098 (16) ŵ = 0.85 mm1
c = 9.5556 (10) ÅT = 293 K
β = 94.644 (2)°Plate, pale brown
V = 1242.0 (2) Å30.20 × 0.10 × 0.03 mm
Z = 2
Bruker SMART CCD diffractometer1826 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.057
graphiteθmax = 26.0°, θmin = 2.5°
φ and ω scansh = −11→11
7646 measured reflectionsk = −20→12
2442 independent reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0755P)2 + 0.0426P] where P = (Fo2 + 2Fc2)/3
2442 reflections(Δ/σ)max < 0.001
179 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.59 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Ni10.50000.50000.50000.0334 (2)
N10.3937 (3)0.52480 (18)0.2948 (3)0.0389 (6)
N20.2830 (3)0.54084 (17)0.5703 (3)0.0347 (6)
O10.5183 (3)0.63487 (17)0.4873 (2)0.0574 (7)
H1A0.59050.65530.43700.086*0.50
H1B0.53050.65900.56880.086*0.50
O20.3337 (3)0.74355 (14)0.3938 (3)0.0539 (6)
H20.38660.77200.45300.081*
C10.3774 (4)0.4731 (2)0.1816 (4)0.0478 (9)
H10.41550.41690.18840.057*
C20.3053 (5)0.5019 (3)0.0558 (4)0.0639 (11)
H2A0.29270.4653−0.02140.077*
C30.2515 (5)0.5865 (3)0.0458 (4)0.0685 (12)
H30.20480.6076−0.03890.082*
C40.2677 (4)0.6386 (3)0.1615 (4)0.0562 (10)
H40.23100.69510.15730.067*
C50.3394 (4)0.6055 (2)0.2841 (3)0.0394 (7)
C60.3583 (4)0.6549 (2)0.4213 (3)0.0386 (7)
C70.2392 (3)0.61766 (19)0.5177 (3)0.0353 (7)
C80.0989 (4)0.6581 (2)0.5451 (4)0.0459 (8)
H80.07000.71120.50540.055*
C90.0030 (4)0.6160 (3)0.6345 (4)0.0594 (10)
H9−0.09190.64140.65690.071*
C100.0462 (4)0.5378 (3)0.6898 (4)0.0521 (9)
H10−0.01820.50970.75000.063*
C110.1873 (4)0.5008 (2)0.6552 (3)0.0434 (8)
H110.21640.44700.69160.052*
N30.3476 (4)0.7718 (2)0.7595 (4)0.0585 (8)
O30.4512 (4)0.71600 (19)0.7535 (3)0.0755 (9)
O40.3188 (5)0.8218 (2)0.6577 (3)0.1014 (12)
O50.2759 (4)0.7785 (2)0.8634 (4)0.0834 (9)
U11U22U33U12U13U23
Ni10.0362 (3)0.0326 (3)0.0319 (3)0.0023 (2)0.0050 (2)−0.0004 (2)
N10.0396 (15)0.0451 (16)0.0326 (15)0.0016 (11)0.0079 (11)−0.0016 (11)
N20.0340 (13)0.0360 (15)0.0343 (14)0.0020 (11)0.0047 (11)−0.0012 (11)
O10.0609 (16)0.0526 (16)0.0587 (16)−0.0010 (12)0.0049 (13)−0.0001 (12)
O20.0675 (17)0.0363 (13)0.0578 (16)0.0069 (12)0.0054 (12)0.0050 (11)
C10.054 (2)0.050 (2)0.040 (2)0.0031 (16)0.0081 (16)−0.0051 (16)
C20.084 (3)0.072 (3)0.036 (2)−0.001 (2)0.0032 (19)−0.0137 (19)
C30.087 (3)0.079 (3)0.038 (2)0.011 (2)−0.004 (2)0.006 (2)
C40.072 (3)0.054 (2)0.043 (2)0.0102 (19)0.0005 (18)0.0078 (17)
C50.0418 (18)0.0411 (19)0.0363 (17)0.0017 (14)0.0095 (14)0.0007 (14)
C60.0390 (18)0.0349 (18)0.0422 (18)0.0031 (14)0.0059 (14)0.0046 (14)
C70.0365 (16)0.0357 (17)0.0336 (16)0.0002 (13)0.0026 (13)−0.0053 (13)
C80.0391 (18)0.048 (2)0.050 (2)0.0069 (15)−0.0001 (15)−0.0015 (15)
C90.040 (2)0.075 (3)0.065 (2)0.0062 (19)0.0128 (18)−0.010 (2)
C100.047 (2)0.064 (2)0.047 (2)−0.0077 (18)0.0155 (16)−0.0005 (18)
C110.0485 (18)0.0451 (19)0.0370 (17)−0.0049 (16)0.0053 (14)0.0002 (15)
N30.067 (2)0.047 (2)0.061 (2)−0.0010 (16)0.0000 (17)−0.0192 (17)
O30.077 (2)0.077 (2)0.0714 (19)0.0337 (16)0.0032 (15)−0.0251 (15)
O40.173 (4)0.056 (2)0.071 (2)0.016 (2)−0.014 (2)−0.0052 (16)
O50.071 (2)0.092 (2)0.092 (2)0.0066 (16)0.0358 (18)−0.0195 (18)
Ni1—N22.093 (2)C2—H2A0.9300
Ni1—N2i2.093 (2)C3—C41.367 (5)
Ni1—O12.102 (3)C3—H30.9300
Ni1—O1i2.102 (3)C4—C51.372 (4)
Ni1—N12.123 (3)C4—H40.9300
Ni1—N1i2.123 (3)C5—C61.515 (4)
N1—C51.334 (4)C6—C71.528 (4)
N1—C11.345 (4)C7—C81.380 (4)
N2—C71.333 (4)C8—C91.385 (5)
N2—C111.340 (4)C8—H80.9300
O1—C61.472 (4)C9—C101.360 (5)
O1—H1A0.8650C9—H90.9300
O1—H1B0.8625C10—C111.382 (5)
O2—C61.412 (4)C10—H100.9300
O2—H20.8200C11—H110.9300
C1—C21.377 (5)N3—O51.206 (4)
C1—H10.9300N3—O31.233 (4)
C2—C31.388 (5)N3—O41.253 (4)
N2—Ni1—N2i180.0C4—C3—C2119.5 (4)
N2—Ni1—O177.70 (10)C4—C3—H3120.3
N2i—Ni1—O1102.30 (10)C2—C3—H3120.3
N2—Ni1—O1i102.30 (10)C3—C4—C5118.5 (4)
N2i—Ni1—O1i77.70 (10)C3—C4—H4120.7
O1—Ni1—O1i180.0C5—C4—H4120.7
N2—Ni1—N185.93 (9)N1—C5—C4122.7 (3)
N2i—Ni1—N194.07 (9)N1—C5—C6113.4 (3)
O1—Ni1—N178.10 (10)C4—C5—C6123.9 (3)
O1i—Ni1—N1101.90 (10)O2—C6—O1113.6 (2)
N2—Ni1—N1i94.07 (9)O2—C6—C5109.1 (3)
N2i—Ni1—N1i85.93 (9)O1—C6—C5107.0 (2)
O1—Ni1—N1i101.90 (10)O2—C6—C7112.8 (2)
O1i—Ni1—N1i78.10 (10)O1—C6—C7106.4 (2)
N1—Ni1—N1i180.000 (1)C5—C6—C7107.6 (2)
C5—N1—C1119.1 (3)N2—C7—C8123.3 (3)
C5—N1—Ni1110.9 (2)N2—C7—C6113.0 (2)
C1—N1—Ni1130.0 (2)C8—C7—C6123.7 (3)
C7—N2—C11118.7 (3)C7—C8—C9116.8 (3)
C7—N2—Ni1111.76 (19)C7—C8—H8121.6
C11—N2—Ni1129.5 (2)C9—C8—H8121.6
C6—O1—Ni199.56 (17)C10—C9—C8120.7 (3)
C6—O1—H1A110.0C10—C9—H9119.7
Ni1—O1—H1A117.0C8—C9—H9119.7
C6—O1—H1B109.5C9—C10—C11119.0 (3)
Ni1—O1—H1B112.6C9—C10—H10120.5
H1A—O1—H1B107.8C11—C10—H10120.5
C6—O2—H2109.5N2—C11—C10121.5 (3)
N1—C1—C2121.2 (4)N2—C11—H11119.3
N1—C1—H1119.4C10—C11—H11119.3
C2—C1—H1119.4O5—N3—O3120.1 (4)
C1—C2—C3119.0 (4)O5—N3—O4120.5 (4)
C1—C2—H2A120.5O3—N3—O4119.4 (4)
C3—C2—H2A120.5
D—H···AD—HH···AD···AD—H···A
O2—H2···O40.822.222.810 (4)129
O1—H1B···O30.862.132.933 (4)155
O1—H1A···O5ii0.872.042.884 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O40.822.222.810 (4)129
O1—H1B⋯O30.862.132.933 (4)155
O1—H1A⋯O5i0.872.042.884 (4)165

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Bis(di-2-pyridyl-methane-diol-κN,O,N')nickel(II) dibenzoate.

Authors:  Jin Hoon Kim; Du-Hyun Kim; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-18
  1 in total

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