| Literature DB >> 21584026 |
David Siegel1, Stefan Merkel, Matthias Koch, Franziska Emmerling, Irene Nehls.
Abstract
In the title compound, C(16)H(19)N(5)O(6), two intramolecular N-H⋯O hydrogen bonds help to establish the conformation. In the crystal, intermolecular N-H⋯O links result in chains propagating in [010].Entities:
Year: 2009 PMID: 21584026 PMCID: PMC2977683 DOI: 10.1107/S1600536809012458
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H19N5O6 | |
| Monoclinic, | Cu |
| Hall symbol: P 2yb | Cell parameters from 25 reflections |
| θ = 60–69° | |
| µ = 0.98 mm−1 | |
| β = 107.363 (4)° | Needles, yellow |
| 0.64 × 0.06 × 0.06 mm | |
| Enraf–Nonius CAD-4 diffractometer | 3103 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 73.6°, θmin = 2.8° |
| ω/2θ scans | |
| Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971) | |
| 3890 measured reflections | 3 standard reflections every 60 min |
| 3282 independent reflections | intensity decay: 2% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3282 reflections | Δρmax = 0.24 e Å−3 |
| 247 parameters | Δρmin = −0.21 e Å−3 |
| 1 restraint | Absolute structure: (Flack,1983) |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.1 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.28853 (17) | 1.4445 (4) | 0.18665 (10) | 0.0394 (4) | |
| O2 | 0.38017 (15) | 1.3663 (4) | 0.31656 (10) | 0.0373 (4) | |
| O3 | −0.1297 (2) | 0.5644 (5) | 0.06973 (11) | 0.0559 (5) | |
| O4 | −0.07342 (18) | 0.9300 (4) | 0.01932 (9) | 0.0444 (4) | |
| O5 | 0.43857 (13) | 0.4033 (3) | 0.54411 (8) | 0.0277 (3) | |
| O6 | 0.13063 (14) | 0.7678 (4) | 0.66874 (9) | 0.0348 (4) | |
| N1 | 0.29520 (16) | 1.3174 (4) | 0.24909 (10) | 0.0267 (4) | |
| N2 | −0.06562 (18) | 0.7738 (4) | 0.07614 (11) | 0.0339 (4) | |
| N3 | 0.27686 (16) | 1.0106 (4) | 0.39501 (10) | 0.0280 (4) | |
| H3N | 0.3538 | 1.1087 | 0.4007 | 0.034* | |
| N4 | 0.29331 (16) | 0.8153 (4) | 0.45682 (10) | 0.0266 (4) | |
| H4N | 0.3584 | 0.6959 | 0.4627 | 0.032* | |
| N5 | 0.39181 (16) | 0.3303 (4) | 0.66688 (9) | 0.0262 (4) | |
| H5N | 0.4542 | 0.2158 | 0.6856 | 0.031* | |
| C1 | 0.20134 (18) | 1.0983 (4) | 0.24520 (12) | 0.0230 (4) | |
| C2 | 0.11472 (18) | 1.0434 (4) | 0.16609 (11) | 0.0254 (4) | |
| H2 | 0.1175 | 1.1462 | 0.1190 | 0.030* | |
| C3 | 0.02556 (19) | 0.8361 (5) | 0.15868 (12) | 0.0265 (4) | |
| C4 | 0.01923 (18) | 0.6831 (4) | 0.22646 (12) | 0.0271 (4) | |
| H4 | −0.0428 | 0.5404 | 0.2195 | 0.032* | |
| C5 | 0.10350 (19) | 0.7399 (4) | 0.30371 (12) | 0.0266 (4) | |
| H5 | 0.0984 | 0.6356 | 0.3500 | 0.032* | |
| C6 | 0.19821 (17) | 0.9503 (4) | 0.31639 (11) | 0.0240 (4) | |
| C7 | 0.23382 (17) | 0.8356 (4) | 0.51605 (11) | 0.0231 (4) | |
| C8 | 0.27239 (16) | 0.6612 (4) | 0.58383 (11) | 0.0221 (4) | |
| C9 | 0.37640 (18) | 0.4572 (4) | 0.59406 (11) | 0.0212 (4) | |
| C10 | 0.30819 (18) | 0.4349 (4) | 0.71460 (11) | 0.0242 (4) | |
| H10 | 0.2515 | 0.2860 | 0.7250 | 0.029* | |
| C11 | 0.22234 (17) | 0.6447 (4) | 0.65454 (11) | 0.0246 (4) | |
| C12 | 0.38790 (18) | 0.5633 (4) | 0.79844 (11) | 0.0253 (4) | |
| H12 | 0.4282 | 0.7347 | 0.7860 | 0.030* | |
| C13 | 0.4990 (3) | 0.3758 (6) | 0.84642 (14) | 0.0444 (6) | |
| H13A | 0.4600 | 0.2030 | 0.8572 | 0.053* | |
| H13B | 0.5552 | 0.3350 | 0.8106 | 0.053* | |
| C14 | 0.5849 (3) | 0.4865 (7) | 0.92845 (14) | 0.0501 (7) | |
| H14A | 0.5337 | 0.4985 | 0.9680 | 0.075* | |
| H14B | 0.6165 | 0.6671 | 0.9197 | 0.075* | |
| H14C | 0.6599 | 0.3656 | 0.9508 | 0.075* | |
| C15 | 0.2971 (2) | 0.6350 (9) | 0.84970 (15) | 0.0578 (9) | |
| H15A | 0.3448 | 0.7459 | 0.8974 | 0.087* | |
| H15B | 0.2664 | 0.4686 | 0.8696 | 0.087* | |
| H15C | 0.2216 | 0.7368 | 0.8152 | 0.087* | |
| C16 | 0.12597 (18) | 1.0397 (4) | 0.50566 (12) | 0.0278 (4) | |
| H16A | 0.0503 | 0.9865 | 0.4589 | 0.042* | |
| H16B | 0.1572 | 1.2181 | 0.4945 | 0.042* | |
| H16C | 0.0999 | 1.0476 | 0.5567 | 0.042* |
| O1 | 0.0475 (9) | 0.0367 (10) | 0.0360 (8) | −0.0111 (7) | 0.0159 (7) | 0.0053 (7) |
| O2 | 0.0333 (7) | 0.0348 (9) | 0.0376 (7) | −0.0119 (7) | 0.0012 (6) | 0.0042 (7) |
| O3 | 0.0587 (11) | 0.0619 (14) | 0.0401 (9) | −0.0337 (11) | 0.0039 (8) | −0.0078 (9) |
| O4 | 0.0529 (9) | 0.0479 (11) | 0.0256 (7) | −0.0039 (9) | 0.0015 (6) | 0.0023 (8) |
| O5 | 0.0263 (6) | 0.0311 (8) | 0.0265 (6) | 0.0058 (6) | 0.0092 (5) | −0.0005 (6) |
| O6 | 0.0290 (7) | 0.0447 (10) | 0.0320 (7) | 0.0120 (7) | 0.0111 (5) | −0.0006 (7) |
| N1 | 0.0266 (8) | 0.0226 (9) | 0.0316 (8) | −0.0008 (7) | 0.0099 (6) | 0.0016 (7) |
| N2 | 0.0334 (9) | 0.0378 (12) | 0.0279 (8) | −0.0041 (8) | 0.0053 (7) | −0.0050 (8) |
| N3 | 0.0256 (7) | 0.0300 (10) | 0.0246 (8) | −0.0046 (7) | 0.0020 (6) | 0.0053 (7) |
| N4 | 0.0250 (7) | 0.0276 (9) | 0.0260 (8) | 0.0049 (7) | 0.0059 (6) | 0.0050 (7) |
| N5 | 0.0311 (8) | 0.0242 (9) | 0.0226 (7) | 0.0071 (7) | 0.0073 (6) | 0.0004 (6) |
| C1 | 0.0219 (8) | 0.0195 (10) | 0.0277 (9) | 0.0018 (7) | 0.0075 (7) | 0.0015 (7) |
| C2 | 0.0262 (9) | 0.0244 (10) | 0.0257 (9) | 0.0029 (8) | 0.0082 (7) | 0.0012 (8) |
| C3 | 0.0236 (8) | 0.0290 (11) | 0.0257 (9) | 0.0016 (8) | 0.0053 (7) | −0.0028 (8) |
| C4 | 0.0239 (9) | 0.0249 (11) | 0.0336 (9) | −0.0028 (8) | 0.0104 (7) | −0.0028 (8) |
| C5 | 0.0280 (9) | 0.0253 (11) | 0.0276 (9) | −0.0003 (8) | 0.0099 (7) | 0.0031 (8) |
| C6 | 0.0210 (8) | 0.0254 (11) | 0.0254 (8) | 0.0021 (7) | 0.0064 (7) | −0.0011 (8) |
| C7 | 0.0204 (8) | 0.0213 (9) | 0.0239 (8) | −0.0048 (7) | 0.0009 (6) | −0.0041 (7) |
| C8 | 0.0200 (8) | 0.0209 (10) | 0.0228 (8) | 0.0004 (7) | 0.0025 (6) | −0.0032 (7) |
| C9 | 0.0218 (8) | 0.0175 (10) | 0.0221 (8) | −0.0014 (7) | 0.0030 (6) | −0.0026 (7) |
| C10 | 0.0254 (8) | 0.0240 (10) | 0.0237 (8) | −0.0011 (8) | 0.0083 (7) | −0.0014 (8) |
| C11 | 0.0206 (8) | 0.0266 (11) | 0.0244 (8) | −0.0004 (8) | 0.0031 (6) | −0.0037 (8) |
| C12 | 0.0274 (9) | 0.0266 (11) | 0.0209 (8) | 0.0008 (8) | 0.0056 (7) | −0.0016 (7) |
| C13 | 0.0492 (13) | 0.0449 (16) | 0.0314 (10) | 0.0177 (12) | 0.0005 (9) | 0.0001 (10) |
| C14 | 0.0420 (13) | 0.071 (2) | 0.0305 (11) | 0.0011 (13) | −0.0001 (9) | 0.0054 (12) |
| C15 | 0.0391 (12) | 0.102 (3) | 0.0311 (11) | 0.0168 (15) | 0.0088 (9) | −0.0188 (14) |
| C16 | 0.0229 (8) | 0.0242 (11) | 0.0330 (10) | 0.0017 (8) | 0.0032 (7) | 0.0003 (8) |
| O1—N1 | 1.208 (2) | C5—H5 | 0.9500 |
| O2—N1 | 1.248 (2) | C7—C8 | 1.391 (3) |
| O3—N2 | 1.227 (3) | C7—C16 | 1.500 (3) |
| O4—N2 | 1.212 (3) | C8—C11 | 1.445 (3) |
| O5—C9 | 1.246 (2) | C8—C9 | 1.470 (3) |
| O6—C11 | 1.235 (2) | C10—C11 | 1.544 (3) |
| N1—C1 | 1.463 (3) | C10—C12 | 1.550 (2) |
| N2—C3 | 1.472 (2) | C10—H10 | 1.0000 |
| N3—C6 | 1.372 (2) | C12—C15 | 1.519 (3) |
| N3—N4 | 1.391 (2) | C12—C13 | 1.531 (3) |
| N3—H3N | 0.9328 | C12—H12 | 1.0000 |
| N4—C7 | 1.336 (2) | C13—C14 | 1.514 (3) |
| N4—H4N | 0.8942 | C13—H13A | 0.9900 |
| N5—C9 | 1.343 (2) | C13—H13B | 0.9900 |
| N5—C10 | 1.462 (2) | C14—H14A | 0.9800 |
| N5—H5N | 0.8585 | C14—H14B | 0.9800 |
| C1—C2 | 1.403 (3) | C14—H14C | 0.9800 |
| C1—C6 | 1.413 (3) | C15—H15A | 0.9800 |
| C2—C3 | 1.378 (3) | C15—H15B | 0.9800 |
| C2—H2 | 0.9500 | C15—H15C | 0.9800 |
| C3—C4 | 1.387 (3) | C16—H16A | 0.9800 |
| C4—C5 | 1.372 (3) | C16—H16B | 0.9800 |
| C4—H4 | 0.9500 | C16—H16C | 0.9800 |
| C5—C6 | 1.421 (3) | ||
| O1—N1—O2 | 121.99 (18) | N5—C9—C8 | 108.01 (16) |
| O1—N1—C1 | 118.93 (16) | N5—C10—C11 | 102.55 (14) |
| O2—N1—C1 | 119.08 (16) | N5—C10—C12 | 112.72 (16) |
| O4—N2—O3 | 124.19 (18) | C11—C10—C12 | 112.29 (17) |
| O4—N2—C3 | 118.86 (19) | N5—C10—H10 | 109.7 |
| O3—N2—C3 | 116.95 (19) | C11—C10—H10 | 109.7 |
| C6—N3—N4 | 118.40 (17) | C12—C10—H10 | 109.7 |
| C6—N3—H3N | 118.5 | O6—C11—C8 | 129.87 (19) |
| N4—N3—H3N | 111.9 | O6—C11—C10 | 123.60 (17) |
| C7—N4—N3 | 121.63 (17) | C8—C11—C10 | 106.53 (16) |
| C7—N4—H4N | 119.6 | C15—C12—C13 | 111.46 (19) |
| N3—N4—H4N | 117.4 | C15—C12—C10 | 110.08 (17) |
| C9—N5—C10 | 114.12 (17) | C13—C12—C10 | 111.18 (18) |
| C9—N5—H5N | 120.9 | C15—C12—H12 | 108.0 |
| C10—N5—H5N | 124.4 | C13—C12—H12 | 108.0 |
| C2—C1—C6 | 122.02 (18) | C10—C12—H12 | 108.0 |
| C2—C1—N1 | 115.71 (16) | C14—C13—C12 | 115.2 (2) |
| C6—C1—N1 | 122.27 (16) | C14—C13—H13A | 108.5 |
| C3—C2—C1 | 118.11 (18) | C12—C13—H13A | 108.5 |
| C3—C2—H2 | 120.9 | C14—C13—H13B | 108.5 |
| C1—C2—H2 | 120.9 | C12—C13—H13B | 108.5 |
| C2—C3—C4 | 122.15 (17) | H13A—C13—H13B | 107.5 |
| C2—C3—N2 | 119.00 (18) | C13—C14—H14A | 109.5 |
| C4—C3—N2 | 118.85 (19) | C13—C14—H14B | 109.5 |
| C5—C4—C3 | 119.32 (19) | H14A—C14—H14B | 109.5 |
| C5—C4—H4 | 120.3 | C13—C14—H14C | 109.5 |
| C3—C4—H4 | 120.3 | H14A—C14—H14C | 109.5 |
| C4—C5—C6 | 121.87 (18) | H14B—C14—H14C | 109.5 |
| C4—C5—H5 | 119.1 | C12—C15—H15A | 109.5 |
| C6—C5—H5 | 119.1 | C12—C15—H15B | 109.5 |
| N3—C6—C1 | 122.96 (18) | H15A—C15—H15B | 109.5 |
| N3—C6—C5 | 120.45 (17) | C12—C15—H15C | 109.5 |
| C1—C6—C5 | 116.52 (17) | H15A—C15—H15C | 109.5 |
| N4—C7—C8 | 118.42 (17) | H15B—C15—H15C | 109.5 |
| N4—C7—C16 | 118.82 (17) | C7—C16—H16A | 109.5 |
| C8—C7—C16 | 122.73 (17) | C7—C16—H16B | 109.5 |
| C7—C8—C11 | 128.27 (17) | H16A—C16—H16B | 109.5 |
| C7—C8—C9 | 123.28 (16) | C7—C16—H16C | 109.5 |
| C11—C8—C9 | 108.45 (16) | H16A—C16—H16C | 109.5 |
| O5—C9—N5 | 124.91 (18) | H16B—C16—H16C | 109.5 |
| O5—C9—C8 | 127.06 (17) | ||
| C6—N3—N4—C7 | −105.2 (2) | N4—C7—C8—C11 | −179.71 (18) |
| O1—N1—C1—C2 | 3.8 (3) | C16—C7—C8—C11 | −1.4 (3) |
| O2—N1—C1—C2 | −175.79 (18) | N4—C7—C8—C9 | 0.7 (3) |
| O1—N1—C1—C6 | −176.46 (19) | C16—C7—C8—C9 | 178.93 (17) |
| O2—N1—C1—C6 | 4.0 (3) | C10—N5—C9—O5 | 179.12 (18) |
| C6—C1—C2—C3 | −0.8 (3) | C10—N5—C9—C8 | −2.4 (2) |
| N1—C1—C2—C3 | 179.01 (17) | C7—C8—C9—O5 | −3.5 (3) |
| C1—C2—C3—C4 | 0.1 (3) | C11—C8—C9—O5 | 176.79 (19) |
| C1—C2—C3—N2 | −179.57 (18) | C7—C8—C9—N5 | 178.00 (18) |
| O4—N2—C3—C2 | −10.8 (3) | C11—C8—C9—N5 | −1.7 (2) |
| O3—N2—C3—C2 | 169.4 (2) | C9—N5—C10—C11 | 5.1 (2) |
| O4—N2—C3—C4 | 169.5 (2) | C9—N5—C10—C12 | −115.88 (19) |
| O3—N2—C3—C4 | −10.3 (3) | C7—C8—C11—O6 | 4.6 (4) |
| C2—C3—C4—C5 | 0.5 (3) | C9—C8—C11—O6 | −175.7 (2) |
| N2—C3—C4—C5 | −179.82 (18) | C7—C8—C11—C10 | −174.97 (18) |
| C3—C4—C5—C6 | −0.5 (3) | C9—C8—C11—C10 | 4.7 (2) |
| N4—N3—C6—C1 | −162.77 (18) | N5—C10—C11—O6 | 174.63 (19) |
| N4—N3—C6—C5 | 20.5 (3) | C12—C10—C11—O6 | −64.1 (2) |
| C2—C1—C6—N3 | −176.16 (18) | N5—C10—C11—C8 | −5.7 (2) |
| N1—C1—C6—N3 | 4.1 (3) | C12—C10—C11—C8 | 115.53 (17) |
| C2—C1—C6—C5 | 0.7 (3) | N5—C10—C12—C15 | −172.8 (2) |
| N1—C1—C6—C5 | −179.02 (17) | C11—C10—C12—C15 | 72.0 (3) |
| C4—C5—C6—N3 | 176.88 (19) | N5—C10—C12—C13 | −48.8 (2) |
| C4—C5—C6—C1 | −0.1 (3) | C11—C10—C12—C13 | −164.01 (19) |
| N3—N4—C7—C8 | −168.70 (16) | C15—C12—C13—C14 | −58.2 (3) |
| N3—N4—C7—C16 | 13.0 (3) | C10—C12—C13—C14 | 178.5 (2) |
| H··· | ||||
| N3—H3N···O2 | 0.93 | 1.99 | 2.630 (2) | 125 |
| N4—H4N···O5 | 0.89 | 2.00 | 2.710 (2) | 135 |
| N3—H3N···O5i | 0.93 | 2.36 | 2.949 (2) | 121 |
| N4—H4N···O5i | 0.89 | 2.43 | 2.898 (2) | 113 |
| N5—H5N···O2ii | 0.86 | 2.48 | 3.293 (2) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.93 | 1.99 | 2.630 (2) | 125 |
| N4—H4 | 0.89 | 2.00 | 2.710 (2) | 135 |
| N3—H3 | 0.93 | 2.36 | 2.949 (2) | 121 |
| N4—H4 | 0.89 | 2.43 | 2.898 (2) | 113 |
| N5—H5 | 0.86 | 2.48 | 3.293 (2) | 159 |
Symmetry codes: (i) ; (ii) .