Literature DB >> 21584026

3-{1-[(2,4-Dinitrophenyl)hydrazino]-ethyl-idene}-5-(1-methylpropyl)pyrrolidine-2,4-dione.

David Siegel1, Stefan Merkel, Matthias Koch, Franziska Emmerling, Irene Nehls.   

Abstract

In the title compound, C(16)H(19)N(5)O(6), two intramolecular N-H⋯O hydrogen bonds help to establish the conformation. In the crystal, intermolecular N-H⋯O links result in chains propagating in [010].

Entities:  

Year:  2009        PMID: 21584026      PMCID: PMC2977683          DOI: 10.1107/S1600536809012458

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of the title compound in instrumental analytical chemistry, see: Siegel et al. (2009 ▶). For the crystal structure of the tenuazonic copper(II) salt, see: Dippenaar et al. (1977 ▶). For the structures of other 2,4-dinitro­phenyl­hydrazones, see: Tameem et al. (2006 ▶); Monfared et al. (2007 ▶); Valente et al. (2008 ▶); Yin et al. (2008 ▶). Solubilized tetra­mic acids and their hydrazones display a variety of tautomeric forms, see: Gelin et al. (1982 ▶); Nolte et al. (1980 ▶); Royles (1995 ▶); Yamaguchi et al. (1976a ▶, 1976b ▶). For the synthesis, see: Lebrun et al. (1988 ▶).

Experimental

Crystal data

C16H19N5O6 M = 377.36 Monoclinic, a = 10.6710 (10) Å b = 4.9387 (5) Å c = 16.839 (2) Å β = 107.363 (4)° V = 846.98 (15) Å3 Z = 2 Cu Kα radiation μ = 0.98 mm−1 T = 193 K 0.64 × 0.06 × 0.06 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.78, T max = 0.94 3890 measured reflections 3282 independent reflections 3103 reflections with I > 2σ(I) R int = 0.025 3 standard reflections frequency: 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 0.99 3282 reflections 247 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: (Flack,1983 ▶) Flack parameter: 0.1 (2) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809012458/kj2118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012458/kj2118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19N5O6F(000) = 396
Mr = 377.36Dx = 1.480 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 10.671 (1) Åθ = 60–69°
b = 4.9387 (5) ŵ = 0.98 mm1
c = 16.839 (2) ÅT = 193 K
β = 107.363 (4)°Needles, yellow
V = 846.98 (15) Å30.64 × 0.06 × 0.06 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer3103 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 73.6°, θmin = 2.8°
ω/2θ scansh = −13→13
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −5→6
Tmin = 0.78, Tmax = 0.94l = −20→20
3890 measured reflections3 standard reflections every 60 min
3282 independent reflections intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0778P)2 + 0.1634P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
3282 reflectionsΔρmax = 0.24 e Å3
247 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: (Flack,1983)
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.1 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.28853 (17)1.4445 (4)0.18665 (10)0.0394 (4)
O20.38017 (15)1.3663 (4)0.31656 (10)0.0373 (4)
O3−0.1297 (2)0.5644 (5)0.06973 (11)0.0559 (5)
O4−0.07342 (18)0.9300 (4)0.01932 (9)0.0444 (4)
O50.43857 (13)0.4033 (3)0.54411 (8)0.0277 (3)
O60.13063 (14)0.7678 (4)0.66874 (9)0.0348 (4)
N10.29520 (16)1.3174 (4)0.24909 (10)0.0267 (4)
N2−0.06562 (18)0.7738 (4)0.07614 (11)0.0339 (4)
N30.27686 (16)1.0106 (4)0.39501 (10)0.0280 (4)
H3N0.35381.10870.40070.034*
N40.29331 (16)0.8153 (4)0.45682 (10)0.0266 (4)
H4N0.35840.69590.46270.032*
N50.39181 (16)0.3303 (4)0.66688 (9)0.0262 (4)
H5N0.45420.21580.68560.031*
C10.20134 (18)1.0983 (4)0.24520 (12)0.0230 (4)
C20.11472 (18)1.0434 (4)0.16609 (11)0.0254 (4)
H20.11751.14620.11900.030*
C30.02556 (19)0.8361 (5)0.15868 (12)0.0265 (4)
C40.01923 (18)0.6831 (4)0.22646 (12)0.0271 (4)
H4−0.04280.54040.21950.032*
C50.10350 (19)0.7399 (4)0.30371 (12)0.0266 (4)
H50.09840.63560.35000.032*
C60.19821 (17)0.9503 (4)0.31639 (11)0.0240 (4)
C70.23382 (17)0.8356 (4)0.51605 (11)0.0231 (4)
C80.27239 (16)0.6612 (4)0.58383 (11)0.0221 (4)
C90.37640 (18)0.4572 (4)0.59406 (11)0.0212 (4)
C100.30819 (18)0.4349 (4)0.71460 (11)0.0242 (4)
H100.25150.28600.72500.029*
C110.22234 (17)0.6447 (4)0.65454 (11)0.0246 (4)
C120.38790 (18)0.5633 (4)0.79844 (11)0.0253 (4)
H120.42820.73470.78600.030*
C130.4990 (3)0.3758 (6)0.84642 (14)0.0444 (6)
H13A0.46000.20300.85720.053*
H13B0.55520.33500.81060.053*
C140.5849 (3)0.4865 (7)0.92845 (14)0.0501 (7)
H14A0.53370.49850.96800.075*
H14B0.61650.66710.91970.075*
H14C0.65990.36560.95080.075*
C150.2971 (2)0.6350 (9)0.84970 (15)0.0578 (9)
H15A0.34480.74590.89740.087*
H15B0.26640.46860.86960.087*
H15C0.22160.73680.81520.087*
C160.12597 (18)1.0397 (4)0.50566 (12)0.0278 (4)
H16A0.05030.98650.45890.042*
H16B0.15721.21810.49450.042*
H16C0.09991.04760.55670.042*
U11U22U33U12U13U23
O10.0475 (9)0.0367 (10)0.0360 (8)−0.0111 (7)0.0159 (7)0.0053 (7)
O20.0333 (7)0.0348 (9)0.0376 (7)−0.0119 (7)0.0012 (6)0.0042 (7)
O30.0587 (11)0.0619 (14)0.0401 (9)−0.0337 (11)0.0039 (8)−0.0078 (9)
O40.0529 (9)0.0479 (11)0.0256 (7)−0.0039 (9)0.0015 (6)0.0023 (8)
O50.0263 (6)0.0311 (8)0.0265 (6)0.0058 (6)0.0092 (5)−0.0005 (6)
O60.0290 (7)0.0447 (10)0.0320 (7)0.0120 (7)0.0111 (5)−0.0006 (7)
N10.0266 (8)0.0226 (9)0.0316 (8)−0.0008 (7)0.0099 (6)0.0016 (7)
N20.0334 (9)0.0378 (12)0.0279 (8)−0.0041 (8)0.0053 (7)−0.0050 (8)
N30.0256 (7)0.0300 (10)0.0246 (8)−0.0046 (7)0.0020 (6)0.0053 (7)
N40.0250 (7)0.0276 (9)0.0260 (8)0.0049 (7)0.0059 (6)0.0050 (7)
N50.0311 (8)0.0242 (9)0.0226 (7)0.0071 (7)0.0073 (6)0.0004 (6)
C10.0219 (8)0.0195 (10)0.0277 (9)0.0018 (7)0.0075 (7)0.0015 (7)
C20.0262 (9)0.0244 (10)0.0257 (9)0.0029 (8)0.0082 (7)0.0012 (8)
C30.0236 (8)0.0290 (11)0.0257 (9)0.0016 (8)0.0053 (7)−0.0028 (8)
C40.0239 (9)0.0249 (11)0.0336 (9)−0.0028 (8)0.0104 (7)−0.0028 (8)
C50.0280 (9)0.0253 (11)0.0276 (9)−0.0003 (8)0.0099 (7)0.0031 (8)
C60.0210 (8)0.0254 (11)0.0254 (8)0.0021 (7)0.0064 (7)−0.0011 (8)
C70.0204 (8)0.0213 (9)0.0239 (8)−0.0048 (7)0.0009 (6)−0.0041 (7)
C80.0200 (8)0.0209 (10)0.0228 (8)0.0004 (7)0.0025 (6)−0.0032 (7)
C90.0218 (8)0.0175 (10)0.0221 (8)−0.0014 (7)0.0030 (6)−0.0026 (7)
C100.0254 (8)0.0240 (10)0.0237 (8)−0.0011 (8)0.0083 (7)−0.0014 (8)
C110.0206 (8)0.0266 (11)0.0244 (8)−0.0004 (8)0.0031 (6)−0.0037 (8)
C120.0274 (9)0.0266 (11)0.0209 (8)0.0008 (8)0.0056 (7)−0.0016 (7)
C130.0492 (13)0.0449 (16)0.0314 (10)0.0177 (12)0.0005 (9)0.0001 (10)
C140.0420 (13)0.071 (2)0.0305 (11)0.0011 (13)−0.0001 (9)0.0054 (12)
C150.0391 (12)0.102 (3)0.0311 (11)0.0168 (15)0.0088 (9)−0.0188 (14)
C160.0229 (8)0.0242 (11)0.0330 (10)0.0017 (8)0.0032 (7)0.0003 (8)
O1—N11.208 (2)C5—H50.9500
O2—N11.248 (2)C7—C81.391 (3)
O3—N21.227 (3)C7—C161.500 (3)
O4—N21.212 (3)C8—C111.445 (3)
O5—C91.246 (2)C8—C91.470 (3)
O6—C111.235 (2)C10—C111.544 (3)
N1—C11.463 (3)C10—C121.550 (2)
N2—C31.472 (2)C10—H101.0000
N3—C61.372 (2)C12—C151.519 (3)
N3—N41.391 (2)C12—C131.531 (3)
N3—H3N0.9328C12—H121.0000
N4—C71.336 (2)C13—C141.514 (3)
N4—H4N0.8942C13—H13A0.9900
N5—C91.343 (2)C13—H13B0.9900
N5—C101.462 (2)C14—H14A0.9800
N5—H5N0.8585C14—H14B0.9800
C1—C21.403 (3)C14—H14C0.9800
C1—C61.413 (3)C15—H15A0.9800
C2—C31.378 (3)C15—H15B0.9800
C2—H20.9500C15—H15C0.9800
C3—C41.387 (3)C16—H16A0.9800
C4—C51.372 (3)C16—H16B0.9800
C4—H40.9500C16—H16C0.9800
C5—C61.421 (3)
O1—N1—O2121.99 (18)N5—C9—C8108.01 (16)
O1—N1—C1118.93 (16)N5—C10—C11102.55 (14)
O2—N1—C1119.08 (16)N5—C10—C12112.72 (16)
O4—N2—O3124.19 (18)C11—C10—C12112.29 (17)
O4—N2—C3118.86 (19)N5—C10—H10109.7
O3—N2—C3116.95 (19)C11—C10—H10109.7
C6—N3—N4118.40 (17)C12—C10—H10109.7
C6—N3—H3N118.5O6—C11—C8129.87 (19)
N4—N3—H3N111.9O6—C11—C10123.60 (17)
C7—N4—N3121.63 (17)C8—C11—C10106.53 (16)
C7—N4—H4N119.6C15—C12—C13111.46 (19)
N3—N4—H4N117.4C15—C12—C10110.08 (17)
C9—N5—C10114.12 (17)C13—C12—C10111.18 (18)
C9—N5—H5N120.9C15—C12—H12108.0
C10—N5—H5N124.4C13—C12—H12108.0
C2—C1—C6122.02 (18)C10—C12—H12108.0
C2—C1—N1115.71 (16)C14—C13—C12115.2 (2)
C6—C1—N1122.27 (16)C14—C13—H13A108.5
C3—C2—C1118.11 (18)C12—C13—H13A108.5
C3—C2—H2120.9C14—C13—H13B108.5
C1—C2—H2120.9C12—C13—H13B108.5
C2—C3—C4122.15 (17)H13A—C13—H13B107.5
C2—C3—N2119.00 (18)C13—C14—H14A109.5
C4—C3—N2118.85 (19)C13—C14—H14B109.5
C5—C4—C3119.32 (19)H14A—C14—H14B109.5
C5—C4—H4120.3C13—C14—H14C109.5
C3—C4—H4120.3H14A—C14—H14C109.5
C4—C5—C6121.87 (18)H14B—C14—H14C109.5
C4—C5—H5119.1C12—C15—H15A109.5
C6—C5—H5119.1C12—C15—H15B109.5
N3—C6—C1122.96 (18)H15A—C15—H15B109.5
N3—C6—C5120.45 (17)C12—C15—H15C109.5
C1—C6—C5116.52 (17)H15A—C15—H15C109.5
N4—C7—C8118.42 (17)H15B—C15—H15C109.5
N4—C7—C16118.82 (17)C7—C16—H16A109.5
C8—C7—C16122.73 (17)C7—C16—H16B109.5
C7—C8—C11128.27 (17)H16A—C16—H16B109.5
C7—C8—C9123.28 (16)C7—C16—H16C109.5
C11—C8—C9108.45 (16)H16A—C16—H16C109.5
O5—C9—N5124.91 (18)H16B—C16—H16C109.5
O5—C9—C8127.06 (17)
C6—N3—N4—C7−105.2 (2)N4—C7—C8—C11−179.71 (18)
O1—N1—C1—C23.8 (3)C16—C7—C8—C11−1.4 (3)
O2—N1—C1—C2−175.79 (18)N4—C7—C8—C90.7 (3)
O1—N1—C1—C6−176.46 (19)C16—C7—C8—C9178.93 (17)
O2—N1—C1—C64.0 (3)C10—N5—C9—O5179.12 (18)
C6—C1—C2—C3−0.8 (3)C10—N5—C9—C8−2.4 (2)
N1—C1—C2—C3179.01 (17)C7—C8—C9—O5−3.5 (3)
C1—C2—C3—C40.1 (3)C11—C8—C9—O5176.79 (19)
C1—C2—C3—N2−179.57 (18)C7—C8—C9—N5178.00 (18)
O4—N2—C3—C2−10.8 (3)C11—C8—C9—N5−1.7 (2)
O3—N2—C3—C2169.4 (2)C9—N5—C10—C115.1 (2)
O4—N2—C3—C4169.5 (2)C9—N5—C10—C12−115.88 (19)
O3—N2—C3—C4−10.3 (3)C7—C8—C11—O64.6 (4)
C2—C3—C4—C50.5 (3)C9—C8—C11—O6−175.7 (2)
N2—C3—C4—C5−179.82 (18)C7—C8—C11—C10−174.97 (18)
C3—C4—C5—C6−0.5 (3)C9—C8—C11—C104.7 (2)
N4—N3—C6—C1−162.77 (18)N5—C10—C11—O6174.63 (19)
N4—N3—C6—C520.5 (3)C12—C10—C11—O6−64.1 (2)
C2—C1—C6—N3−176.16 (18)N5—C10—C11—C8−5.7 (2)
N1—C1—C6—N34.1 (3)C12—C10—C11—C8115.53 (17)
C2—C1—C6—C50.7 (3)N5—C10—C12—C15−172.8 (2)
N1—C1—C6—C5−179.02 (17)C11—C10—C12—C1572.0 (3)
C4—C5—C6—N3176.88 (19)N5—C10—C12—C13−48.8 (2)
C4—C5—C6—C1−0.1 (3)C11—C10—C12—C13−164.01 (19)
N3—N4—C7—C8−168.70 (16)C15—C12—C13—C14−58.2 (3)
N3—N4—C7—C1613.0 (3)C10—C12—C13—C14178.5 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O20.931.992.630 (2)125
N4—H4N···O50.892.002.710 (2)135
N3—H3N···O5i0.932.362.949 (2)121
N4—H4N···O5i0.892.432.898 (2)113
N5—H5N···O2ii0.862.483.293 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O20.931.992.630 (2)125
N4—H4N⋯O50.892.002.710 (2)135
N3—H3N⋯O5i0.932.362.949 (2)121
N4—H4N⋯O5i0.892.432.898 (2)113
N5—H5N⋯O2ii0.862.483.293 (2)159

Symmetry codes: (i) ; (ii) .

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