Literature DB >> 21583071

Deacetyl- tenuazonic acid.

David Siegel1, Matthias Koch, Franziska Emmerling, Irene Nehls.   

Abstract

The heterocycle in the title compound {systematic name: (5S)-5-[(1S)-1-methyl-prop-yl]pyrrolidine-2,4-dione}, C(8)H(13)NO(2), is planar (r.m.s. deviation for all non-H atoms = 0.008 Å). The crystal structure is stabilized by N-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21583071      PMCID: PMC2969615          DOI: 10.1107/S1600536809015372

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Tenuazonic acid (TA) is an Alternaria mycotoxin commonly encountered in food (Siegel, Rasenko et al., 2009 ▶; Weidenbörner, 2001 ▶). The title compound is known to be formed upon boiling TA in 0.1 M HCl (Stickings, 1959 ▶). For the synthesis of the title compound, see: Lebrun et al. (1988 ▶). For the crystal structure of the tenuazonic acid copper (II) salt, see: Dippenaar et al. (1977 ▶) and for the 2,4-dinitro­phenyl­hydrazone, see: Siegel, Merkel et al. (2009 ▶). For the structures of other pyrrolidine-2,4-diones, see, for example: Yu et al. (2007 ▶); Zhu et al. (2004 ▶); Ellis & Spek (2001 ▶).

Experimental

Crystal data

C8H13NO2 M = 155.19 Monoclinic, a = 5.0114 (4) Å b = 7.7961 (4) Å c = 10.9919 (10) Å β = 95.778 (4)° V = 427.26 (6) Å3 Z = 2 Cu Kα radiation μ = 0.71 mm−1 T = 193 K 0.44 × 0.16 × 0.16 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.744, T max = 0.993 (expected range = 0.669–0.893) 1866 measured reflections 1571 independent reflections 1558 reflections with I > 2σ(I) R int = 0.040 3 standard reflections frequency: 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.06 1571 reflections 103 parameters 1 restraint H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 697 Friedel pairs Flack parameter: 0.1 (2) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015372/bt2937sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015372/bt2937Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H13NO2F(000) = 168
Mr = 155.19Dx = 1.206 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 5.0114 (4) Åθ = 67–69°
b = 7.7961 (4) ŵ = 0.71 mm1
c = 10.9919 (10) ÅT = 193 K
β = 95.778 (4)°Block, yellow
V = 427.26 (6) Å30.44 × 0.16 × 0.16 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer1558 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.040
graphiteθmax = 69.9°, θmin = 4.0°
ω/2θ scansh = −6→5
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −8→9
Tmin = 0.744, Tmax = 0.993l = −13→13
1866 measured reflections3 standard reflections every 60 min
1571 independent reflections intensity decay: 2%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.036w = 1/[σ2(Fo2) + (0.0616P)2 + 0.0771P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.098(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.22 e Å3
1571 reflectionsΔρmin = −0.16 e Å3
103 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.017 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 697 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.1 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0559 (2)0.66044 (16)0.50335 (11)0.0386 (3)
O20.5911 (3)0.74694 (19)0.22570 (14)0.0494 (4)
N10.2318 (3)0.48864 (18)0.41048 (11)0.0303 (3)
H10.18660.39460.45190.036*
C10.1196 (3)0.6392 (2)0.43372 (14)0.0305 (3)
C20.2400 (3)0.7779 (2)0.36022 (15)0.0360 (4)
H2A0.10120.83200.30210.043*
H2B0.32650.86750.41450.043*
C30.4437 (3)0.6853 (2)0.29328 (15)0.0335 (4)
C40.4354 (3)0.4941 (2)0.32393 (13)0.0296 (3)
H40.61220.45940.36720.036*
C50.3757 (3)0.3822 (2)0.20975 (14)0.0317 (4)
H50.50400.41610.15000.038*
C60.0924 (4)0.4130 (3)0.14885 (16)0.0425 (4)
H6A−0.03730.35940.19950.051*
H6B0.05710.53800.14670.051*
C70.0441 (6)0.3429 (4)0.0202 (2)0.0761 (8)
H7A0.17210.3946−0.03070.114*
H7B−0.13910.3706−0.01380.114*
H7C0.06790.21810.02190.114*
C80.4266 (4)0.1937 (2)0.2416 (2)0.0474 (5)
H8A0.60880.18040.28210.071*
H8B0.40710.12500.16660.071*
H8C0.29670.15490.29660.071*
U11U22U33U12U13U23
O10.0498 (7)0.0316 (6)0.0377 (6)−0.0010 (5)0.0201 (5)−0.0054 (5)
O20.0530 (8)0.0418 (8)0.0576 (8)−0.0067 (6)0.0262 (6)0.0115 (6)
N10.0349 (7)0.0268 (7)0.0303 (6)−0.0028 (5)0.0094 (5)0.0017 (5)
C10.0374 (8)0.0264 (8)0.0279 (7)−0.0056 (6)0.0046 (6)−0.0030 (6)
C20.0462 (9)0.0253 (8)0.0378 (8)−0.0062 (7)0.0104 (7)−0.0022 (7)
C30.0348 (8)0.0312 (8)0.0347 (8)−0.0065 (6)0.0043 (6)0.0024 (7)
C40.0268 (7)0.0308 (8)0.0321 (7)−0.0025 (6)0.0063 (5)0.0042 (7)
C50.0310 (8)0.0312 (8)0.0346 (8)0.0006 (6)0.0120 (6)−0.0011 (6)
C60.0373 (9)0.0512 (11)0.0391 (9)0.0028 (7)0.0037 (7)−0.0102 (8)
C70.0824 (18)0.087 (2)0.0547 (14)0.0218 (14)−0.0144 (12)−0.0302 (13)
C80.0558 (11)0.0317 (9)0.0573 (12)0.0060 (8)0.0182 (8)−0.0003 (8)
O1—C11.2338 (19)C5—C81.526 (2)
O2—C31.199 (2)C5—C61.526 (2)
N1—C11.337 (2)C5—H51.0000
N1—C41.4640 (18)C6—C71.512 (3)
N1—H10.9038C6—H6A0.9900
C1—C21.511 (2)C6—H6B0.9900
C2—C31.501 (2)C7—H7A0.9800
C2—H2A0.9900C7—H7B0.9800
C2—H2B0.9900C7—H7C0.9800
C3—C41.530 (2)C8—H8A0.9800
C4—C51.533 (2)C8—H8B0.9800
C4—H41.0000C8—H8C0.9800
C1—N1—C4115.63 (14)C6—C5—C4111.45 (13)
C1—N1—H1119.0C8—C5—H5107.6
C4—N1—H1125.2C6—C5—H5107.6
O1—C1—N1125.18 (14)C4—C5—H5107.6
O1—C1—C2125.70 (14)C7—C6—C5114.04 (16)
N1—C1—C2109.12 (14)C7—C6—H6A108.7
C3—C2—C1104.25 (14)C5—C6—H6A108.7
C3—C2—H2A110.9C7—C6—H6B108.7
C1—C2—H2A110.9C5—C6—H6B108.7
C3—C2—H2B110.9H6A—C6—H6B107.6
C1—C2—H2B110.9C6—C7—H7A109.5
H2A—C2—H2B108.9C6—C7—H7B109.5
O2—C3—C2127.06 (17)H7A—C7—H7B109.5
O2—C3—C4123.96 (16)C6—C7—H7C109.5
C2—C3—C4108.98 (13)H7A—C7—H7C109.5
N1—C4—C3101.98 (13)H7B—C7—H7C109.5
N1—C4—C5115.10 (13)C5—C8—H8A109.5
C3—C4—C5112.44 (13)C5—C8—H8B109.5
N1—C4—H4109.0H8A—C8—H8B109.5
C3—C4—H4109.0C5—C8—H8C109.5
C5—C4—H4109.0H8A—C8—H8C109.5
C8—C5—C6112.26 (15)H8B—C8—H8C109.5
C8—C5—C4110.21 (14)
C4—N1—C1—O1179.64 (15)C2—C3—C4—N1−1.75 (16)
C4—N1—C1—C20.22 (18)O2—C3—C4—C5−57.6 (2)
O1—C1—C2—C3179.26 (14)C2—C3—C4—C5122.08 (14)
N1—C1—C2—C3−1.33 (18)N1—C4—C5—C8−75.53 (17)
C1—C2—C3—O2−178.44 (17)C3—C4—C5—C8168.27 (14)
C1—C2—C3—C41.90 (17)N1—C4—C5—C649.81 (19)
C1—N1—C4—C30.95 (16)C3—C4—C5—C6−66.39 (17)
C1—N1—C4—C5−121.07 (15)C8—C5—C6—C7−70.6 (3)
O2—C3—C4—N1178.57 (16)C4—C5—C6—C7165.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.902.022.8963 (18)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.902.022.8963 (18)164

Symmetry code: (i) .

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