| Literature DB >> 21583071 |
David Siegel1, Matthias Koch, Franziska Emmerling, Irene Nehls.
Abstract
The heterocycle in the title compound {systematic name: (5S)-5-[(1S)-1-methyl-prop-yl]pyrrolidine-2,4-dione}, C(8)H(13)NO(2), is planar (r.m.s. deviation for all non-H atoms = 0.008 Å). The crystal structure is stabilized by N-H⋯O hydrogen bonding.Entities:
Year: 2009 PMID: 21583071 PMCID: PMC2969615 DOI: 10.1107/S1600536809015372
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H13NO2 | |
| Monoclinic, | Cu |
| Hall symbol: P 2yb | Cell parameters from 25 reflections |
| θ = 67–69° | |
| µ = 0.71 mm−1 | |
| β = 95.778 (4)° | Block, yellow |
| 0.44 × 0.16 × 0.16 mm | |
| Enraf–Nonius CAD-4 diffractometer | 1558 reflections with |
| Radiation source: rotating anode | |
| graphite | θmax = 69.9°, θmin = 4.0° |
| ω/2θ scans | |
| Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971) | |
| 1866 measured reflections | 3 standard reflections every 60 min |
| 1571 independent reflections | intensity decay: 2% |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.22 e Å−3 | |
| 1571 reflections | Δρmin = −0.16 e Å−3 |
| 103 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.017 (4) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 697 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.1 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.0559 (2) | 0.66044 (16) | 0.50335 (11) | 0.0386 (3) | |
| O2 | 0.5911 (3) | 0.74694 (19) | 0.22570 (14) | 0.0494 (4) | |
| N1 | 0.2318 (3) | 0.48864 (18) | 0.41048 (11) | 0.0303 (3) | |
| H1 | 0.1866 | 0.3946 | 0.4519 | 0.036* | |
| C1 | 0.1196 (3) | 0.6392 (2) | 0.43372 (14) | 0.0305 (3) | |
| C2 | 0.2400 (3) | 0.7779 (2) | 0.36022 (15) | 0.0360 (4) | |
| H2A | 0.1012 | 0.8320 | 0.3021 | 0.043* | |
| H2B | 0.3265 | 0.8675 | 0.4145 | 0.043* | |
| C3 | 0.4437 (3) | 0.6853 (2) | 0.29328 (15) | 0.0335 (4) | |
| C4 | 0.4354 (3) | 0.4941 (2) | 0.32393 (13) | 0.0296 (3) | |
| H4 | 0.6122 | 0.4594 | 0.3672 | 0.036* | |
| C5 | 0.3757 (3) | 0.3822 (2) | 0.20975 (14) | 0.0317 (4) | |
| H5 | 0.5040 | 0.4161 | 0.1500 | 0.038* | |
| C6 | 0.0924 (4) | 0.4130 (3) | 0.14885 (16) | 0.0425 (4) | |
| H6A | −0.0373 | 0.3594 | 0.1995 | 0.051* | |
| H6B | 0.0571 | 0.5380 | 0.1467 | 0.051* | |
| C7 | 0.0441 (6) | 0.3429 (4) | 0.0202 (2) | 0.0761 (8) | |
| H7A | 0.1721 | 0.3946 | −0.0307 | 0.114* | |
| H7B | −0.1391 | 0.3706 | −0.0138 | 0.114* | |
| H7C | 0.0679 | 0.2181 | 0.0219 | 0.114* | |
| C8 | 0.4266 (4) | 0.1937 (2) | 0.2416 (2) | 0.0474 (5) | |
| H8A | 0.6088 | 0.1804 | 0.2821 | 0.071* | |
| H8B | 0.4071 | 0.1250 | 0.1666 | 0.071* | |
| H8C | 0.2967 | 0.1549 | 0.2966 | 0.071* |
| O1 | 0.0498 (7) | 0.0316 (6) | 0.0377 (6) | −0.0010 (5) | 0.0201 (5) | −0.0054 (5) |
| O2 | 0.0530 (8) | 0.0418 (8) | 0.0576 (8) | −0.0067 (6) | 0.0262 (6) | 0.0115 (6) |
| N1 | 0.0349 (7) | 0.0268 (7) | 0.0303 (6) | −0.0028 (5) | 0.0094 (5) | 0.0017 (5) |
| C1 | 0.0374 (8) | 0.0264 (8) | 0.0279 (7) | −0.0056 (6) | 0.0046 (6) | −0.0030 (6) |
| C2 | 0.0462 (9) | 0.0253 (8) | 0.0378 (8) | −0.0062 (7) | 0.0104 (7) | −0.0022 (7) |
| C3 | 0.0348 (8) | 0.0312 (8) | 0.0347 (8) | −0.0065 (6) | 0.0043 (6) | 0.0024 (7) |
| C4 | 0.0268 (7) | 0.0308 (8) | 0.0321 (7) | −0.0025 (6) | 0.0063 (5) | 0.0042 (7) |
| C5 | 0.0310 (8) | 0.0312 (8) | 0.0346 (8) | 0.0006 (6) | 0.0120 (6) | −0.0011 (6) |
| C6 | 0.0373 (9) | 0.0512 (11) | 0.0391 (9) | 0.0028 (7) | 0.0037 (7) | −0.0102 (8) |
| C7 | 0.0824 (18) | 0.087 (2) | 0.0547 (14) | 0.0218 (14) | −0.0144 (12) | −0.0302 (13) |
| C8 | 0.0558 (11) | 0.0317 (9) | 0.0573 (12) | 0.0060 (8) | 0.0182 (8) | −0.0003 (8) |
| O1—C1 | 1.2338 (19) | C5—C8 | 1.526 (2) |
| O2—C3 | 1.199 (2) | C5—C6 | 1.526 (2) |
| N1—C1 | 1.337 (2) | C5—H5 | 1.0000 |
| N1—C4 | 1.4640 (18) | C6—C7 | 1.512 (3) |
| N1—H1 | 0.9038 | C6—H6A | 0.9900 |
| C1—C2 | 1.511 (2) | C6—H6B | 0.9900 |
| C2—C3 | 1.501 (2) | C7—H7A | 0.9800 |
| C2—H2A | 0.9900 | C7—H7B | 0.9800 |
| C2—H2B | 0.9900 | C7—H7C | 0.9800 |
| C3—C4 | 1.530 (2) | C8—H8A | 0.9800 |
| C4—C5 | 1.533 (2) | C8—H8B | 0.9800 |
| C4—H4 | 1.0000 | C8—H8C | 0.9800 |
| C1—N1—C4 | 115.63 (14) | C6—C5—C4 | 111.45 (13) |
| C1—N1—H1 | 119.0 | C8—C5—H5 | 107.6 |
| C4—N1—H1 | 125.2 | C6—C5—H5 | 107.6 |
| O1—C1—N1 | 125.18 (14) | C4—C5—H5 | 107.6 |
| O1—C1—C2 | 125.70 (14) | C7—C6—C5 | 114.04 (16) |
| N1—C1—C2 | 109.12 (14) | C7—C6—H6A | 108.7 |
| C3—C2—C1 | 104.25 (14) | C5—C6—H6A | 108.7 |
| C3—C2—H2A | 110.9 | C7—C6—H6B | 108.7 |
| C1—C2—H2A | 110.9 | C5—C6—H6B | 108.7 |
| C3—C2—H2B | 110.9 | H6A—C6—H6B | 107.6 |
| C1—C2—H2B | 110.9 | C6—C7—H7A | 109.5 |
| H2A—C2—H2B | 108.9 | C6—C7—H7B | 109.5 |
| O2—C3—C2 | 127.06 (17) | H7A—C7—H7B | 109.5 |
| O2—C3—C4 | 123.96 (16) | C6—C7—H7C | 109.5 |
| C2—C3—C4 | 108.98 (13) | H7A—C7—H7C | 109.5 |
| N1—C4—C3 | 101.98 (13) | H7B—C7—H7C | 109.5 |
| N1—C4—C5 | 115.10 (13) | C5—C8—H8A | 109.5 |
| C3—C4—C5 | 112.44 (13) | C5—C8—H8B | 109.5 |
| N1—C4—H4 | 109.0 | H8A—C8—H8B | 109.5 |
| C3—C4—H4 | 109.0 | C5—C8—H8C | 109.5 |
| C5—C4—H4 | 109.0 | H8A—C8—H8C | 109.5 |
| C8—C5—C6 | 112.26 (15) | H8B—C8—H8C | 109.5 |
| C8—C5—C4 | 110.21 (14) | ||
| C4—N1—C1—O1 | 179.64 (15) | C2—C3—C4—N1 | −1.75 (16) |
| C4—N1—C1—C2 | 0.22 (18) | O2—C3—C4—C5 | −57.6 (2) |
| O1—C1—C2—C3 | 179.26 (14) | C2—C3—C4—C5 | 122.08 (14) |
| N1—C1—C2—C3 | −1.33 (18) | N1—C4—C5—C8 | −75.53 (17) |
| C1—C2—C3—O2 | −178.44 (17) | C3—C4—C5—C8 | 168.27 (14) |
| C1—C2—C3—C4 | 1.90 (17) | N1—C4—C5—C6 | 49.81 (19) |
| C1—N1—C4—C3 | 0.95 (16) | C3—C4—C5—C6 | −66.39 (17) |
| C1—N1—C4—C5 | −121.07 (15) | C8—C5—C6—C7 | −70.6 (3) |
| O2—C3—C4—N1 | 178.57 (16) | C4—C5—C6—C7 | 165.2 (2) |
| H··· | ||||
| N1—H1···O1i | 0.90 | 2.02 | 2.8963 (18) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.90 | 2.02 | 2.8963 (18) | 164 |
Symmetry code: (i) .