Literature DB >> 21581389

Thio-phene-2-carbaldehyde 2,4-dinitro-phenyl-hydrazone.

Zhi-Gang Yin, Heng-Yu Qian, He-Ping Li, Jie Hu, Chun-Xia Zhang.   

Abstract

In the approximately planar molecule of the title compound, C(11)H(8)N(4)O(4)S, the dihedral angle between the thio-phene and benzene rings is 5.73 (10)°. In the crystal structure, bifurcated inter/intra-molecular N-H⋯(O,O) hydrogen bonds are present. The intermolecular links lead to inversion dimers containing an R(2) (2)(12) graph-set motif.

Entities:  

Year:  2008        PMID: 21581389      PMCID: PMC2959885          DOI: 10.1107/S1600536808038397

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Okabe et al. (1993 ▶). For graph-set notation, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H8N4O4S M = 292.27 Monoclinic, a = 4.8994 (17) Å b = 9.520 (3) Å c = 25.708 (8) Å β = 92.71 (2)° V = 1197.7 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 291 (2) K 0.30 × 0.26 × 0.24 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.915, T max = 0.929 11010 measured reflections 2285 independent reflections 1718 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.087 S = 1.02 2285 reflections 184 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038397/dn2406sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038397/dn2406Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8N4O4SF000 = 600
Mr = 292.27Dx = 1.621 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5391 reflections
a = 4.8994 (17) Åθ = 2.3–27.4º
b = 9.520 (3) ŵ = 0.29 mm1
c = 25.708 (8) ÅT = 291 (2) K
β = 92.71 (2)ºBlock, purple
V = 1197.7 (7) Å30.30 × 0.26 × 0.24 mm
Z = 4
Bruker SMART APEX CCD diffractometer2285 independent reflections
Radiation source: sealed tube1718 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.047
T = 291(2) Kθmax = 26.0º
φ and ω scansθmin = 1.6º
Absorption correction: multi-scan(SADABS; Bruker, 2000)h = −6→5
Tmin = 0.915, Tmax = 0.929k = −11→11
11010 measured reflectionsl = −31→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.087  w = 1/[σ2(Fo2) + (0.04P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2285 reflectionsΔρmax = 0.16 e Å3
184 parametersΔρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1154 (4)0.2360 (2)0.04553 (7)0.0342 (4)
C2−0.0759 (4)0.1287 (2)0.04720 (7)0.0350 (4)
H2−0.20100.11500.01930.042*
C3−0.0801 (4)0.04351 (18)0.08984 (7)0.0315 (4)
C40.1065 (4)0.0673 (2)0.13207 (7)0.0383 (5)
H40.10480.00870.16100.046*
C50.2882 (4)0.1738 (2)0.13141 (7)0.0350 (4)
H50.40960.18700.15990.042*
C60.2980 (4)0.26512 (18)0.08856 (7)0.0291 (4)
C70.8165 (4)0.49823 (19)0.13079 (7)0.0389 (5)
H70.79740.56140.10330.047*
C81.0163 (4)0.52284 (19)0.17283 (7)0.0341 (4)
C91.1994 (5)0.6353 (2)0.17481 (8)0.0418 (5)
H91.20660.70500.14960.050*
C101.3738 (5)0.6289 (2)0.22076 (9)0.0465 (5)
H101.51070.69390.22900.056*
C111.3173 (5)0.5174 (2)0.25090 (8)0.0522 (6)
H111.41130.49750.28230.063*
N10.0973 (4)0.31477 (18)0.00000 (6)0.0394 (4)
N2−0.2778 (4)−0.06932 (17)0.09065 (7)0.0414 (4)
N30.4846 (4)0.37052 (17)0.08923 (6)0.0378 (4)
H10.483 (5)0.426 (2)0.0624 (9)0.045*
N40.6631 (3)0.38663 (15)0.13180 (6)0.0321 (4)
O10.2484 (4)0.41150 (16)−0.00353 (6)0.0545 (4)
O2−0.0594 (3)0.29004 (14)−0.03604 (5)0.0461 (4)
O3−0.4272 (3)−0.08987 (16)0.05310 (6)0.0526 (4)
O4−0.2847 (3)−0.13710 (15)0.12986 (6)0.0513 (4)
S11.05706 (12)0.41736 (6)0.22559 (2)0.04762 (18)
U11U22U33U12U13U23
C10.0302 (10)0.0438 (10)0.0277 (10)−0.0016 (8)−0.0096 (8)−0.0034 (7)
C20.0330 (10)0.0410 (10)0.0303 (10)−0.0007 (8)−0.0046 (8)−0.0039 (7)
C30.0326 (10)0.0290 (8)0.0325 (9)−0.0001 (7)−0.0024 (8)−0.0025 (7)
C40.0414 (12)0.0417 (10)0.0314 (10)0.0038 (8)−0.0038 (9)0.0075 (8)
C50.0259 (10)0.0463 (10)0.0323 (10)0.0090 (8)−0.0035 (8)−0.0005 (8)
C60.0270 (9)0.0339 (8)0.0262 (9)0.0002 (7)−0.0004 (7)−0.0062 (7)
C70.0510 (12)0.0394 (10)0.0257 (9)−0.0026 (9)−0.0057 (8)−0.0013 (8)
C80.0316 (10)0.0353 (9)0.0349 (9)−0.0023 (8)−0.0025 (8)−0.0079 (7)
C90.0473 (13)0.0361 (9)0.0412 (11)−0.0042 (9)−0.0073 (9)−0.0059 (8)
C100.0387 (12)0.0416 (10)0.0581 (14)−0.0045 (9)−0.0105 (10)−0.0220 (10)
C110.0629 (15)0.0558 (13)0.0357 (11)0.0052 (11)−0.0222 (11)−0.0131 (9)
N10.0383 (10)0.0452 (9)0.0335 (9)−0.0104 (8)−0.0120 (8)−0.0013 (7)
N20.0360 (10)0.0421 (9)0.0453 (10)−0.0026 (7)−0.0074 (8)0.0047 (8)
N30.0387 (10)0.0443 (9)0.0290 (9)−0.0077 (7)−0.0126 (7)−0.0001 (7)
N40.0345 (8)0.0344 (8)0.0266 (8)−0.0003 (6)−0.0087 (7)−0.0040 (6)
O10.0659 (11)0.0525 (9)0.0435 (9)−0.0225 (8)−0.0163 (8)0.0158 (7)
O20.0471 (9)0.0505 (8)0.0383 (8)−0.0317 (7)−0.0222 (7)0.0182 (6)
O30.0488 (10)0.0534 (9)0.0537 (9)−0.0260 (7)−0.0185 (8)−0.0002 (7)
O40.0566 (10)0.0451 (8)0.0519 (9)−0.0169 (7)−0.0008 (8)0.0131 (7)
S10.0480 (3)0.0553 (3)0.0385 (3)−0.0071 (2)−0.0093 (2)0.0040 (2)
C1—C21.388 (3)C8—C91.396 (3)
C1—N11.389 (2)C8—S11.692 (2)
C1—C61.417 (2)C9—C101.426 (3)
C2—C31.365 (3)C9—H90.9300
C2—H20.9300C10—C111.351 (3)
C3—C41.404 (2)C10—H100.9300
C3—N21.447 (2)C11—S11.696 (2)
C4—C51.350 (3)C11—H110.9300
C4—H40.9300N1—O11.188 (2)
C5—C61.406 (3)N1—O21.1983 (19)
C5—H50.9300N2—O41.199 (2)
C6—N31.357 (2)N2—O31.199 (2)
C7—N41.302 (2)N3—N41.377 (2)
C7—C81.442 (2)N3—H10.87 (2)
C7—H70.9300
C2—C1—N1114.01 (15)C9—C8—S1112.01 (14)
C2—C1—C6121.47 (17)C7—C8—S1123.66 (14)
N1—C1—C6124.40 (17)C8—C9—C10110.86 (19)
C3—C2—C1119.87 (17)C8—C9—H9124.6
C3—C2—H2120.1C10—C9—H9124.6
C1—C2—H2120.1C11—C10—C9112.19 (18)
C2—C3—C4119.41 (17)C11—C10—H10123.9
C2—C3—N2119.22 (15)C9—C10—H10123.9
C4—C3—N2121.36 (16)C10—C11—S1113.08 (15)
C5—C4—C3121.14 (18)C10—C11—H11123.5
C5—C4—H4119.4S1—C11—H11123.5
C3—C4—H4119.4O1—N1—O2118.16 (16)
C4—C5—C6121.43 (17)O1—N1—C1117.89 (14)
C4—C5—H5119.3O2—N1—C1123.94 (16)
C6—C5—H5119.3O4—N2—O3123.26 (17)
N3—C6—C5119.70 (15)O4—N2—C3117.21 (15)
N3—C6—C1123.69 (17)O3—N2—C3119.53 (16)
C5—C6—C1116.55 (17)C6—N3—N4119.65 (16)
N4—C7—C8119.31 (16)C6—N3—H1117.6 (14)
N4—C7—H7120.3N4—N3—H1122.8 (14)
C8—C7—H7120.3C7—N4—N3114.87 (15)
C9—C8—C7124.33 (18)C8—S1—C1191.85 (11)
N1—C1—C2—C3180.00 (18)C8—C9—C10—C11−0.6 (3)
C6—C1—C2—C3−3.8 (3)C9—C10—C11—S10.1 (3)
C1—C2—C3—C41.3 (3)C2—C1—N1—O1177.51 (19)
C1—C2—C3—N2−178.99 (18)C6—C1—N1—O11.5 (3)
C2—C3—C4—C50.6 (3)C2—C1—N1—O2−3.3 (3)
N2—C3—C4—C5−179.16 (18)C6—C1—N1—O2−179.4 (2)
C3—C4—C5—C60.1 (3)C2—C3—N2—O4−176.10 (19)
C4—C5—C6—N3−179.66 (19)C4—C3—N2—O43.6 (3)
C4—C5—C6—C1−2.5 (3)C2—C3—N2—O33.1 (3)
C2—C1—C6—N3−178.60 (18)C4—C3—N2—O3−177.21 (19)
N1—C1—C6—N3−2.8 (3)C5—C6—N3—N40.2 (3)
C2—C1—C6—C54.3 (3)C1—C6—N3—N4−176.76 (17)
N1—C1—C6—C5−179.88 (19)C8—C7—N4—N3−178.20 (17)
N4—C7—C8—C9177.13 (19)C6—N3—N4—C7−173.88 (18)
N4—C7—C8—S1−2.5 (3)C9—C8—S1—C11−0.66 (18)
C7—C8—C9—C10−178.8 (2)C7—C8—S1—C11179.01 (19)
S1—C8—C9—C100.8 (2)C10—C11—S1—C80.3 (2)
D—H···AD—HH···AD···AD—H···A
N3—H1···O1i0.87 (2)2.57 (2)3.338 (2)148.2 (19)
N3—H1···O10.87 (2)2.01 (2)2.630 (2)127.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1⋯O1i0.87 (2)2.57 (2)3.338 (2)148.2 (19)
N3—H1⋯O10.87 (2)2.01 (2)2.630 (2)127.4 (19)

Symmetry code: (i) .

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