| Literature DB >> 21581389 |
Zhi-Gang Yin, Heng-Yu Qian, He-Ping Li, Jie Hu, Chun-Xia Zhang.
Abstract
In the approximately planar molecule of the title compound, C(11)H(8)N(4)O(4)S, the dihedral angle between the thio-phene and benzene rings is 5.73 (10)°. In the crystal structure, bifurcated inter/intra-molecular N-H⋯(O,O) hydrogen bonds are present. The intermolecular links lead to inversion dimers containing an R(2) (2)(12) graph-set motif.Entities:
Year: 2008 PMID: 21581389 PMCID: PMC2959885 DOI: 10.1107/S1600536808038397
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H8N4O4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5391 reflections |
| θ = 2.3–27.4º | |
| µ = 0.29 mm−1 | |
| β = 92.71 (2)º | Block, purple |
| 0.30 × 0.26 × 0.24 mm | |
| Bruker SMART APEX CCD diffractometer | 2285 independent reflections |
| Radiation source: sealed tube | 1718 reflections with |
| Monochromator: graphite | |
| θmax = 26.0º | |
| φ and ω scans | θmin = 1.6º |
| Absorption correction: multi-scan(SADABS; Bruker, 2000) | |
| 11010 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2285 reflections | Δρmax = 0.16 e Å−3 |
| 184 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1154 (4) | 0.2360 (2) | 0.04553 (7) | 0.0342 (4) | |
| C2 | −0.0759 (4) | 0.1287 (2) | 0.04720 (7) | 0.0350 (4) | |
| H2 | −0.2010 | 0.1150 | 0.0193 | 0.042* | |
| C3 | −0.0801 (4) | 0.04351 (18) | 0.08984 (7) | 0.0315 (4) | |
| C4 | 0.1065 (4) | 0.0673 (2) | 0.13207 (7) | 0.0383 (5) | |
| H4 | 0.1048 | 0.0087 | 0.1610 | 0.046* | |
| C5 | 0.2882 (4) | 0.1738 (2) | 0.13141 (7) | 0.0350 (4) | |
| H5 | 0.4096 | 0.1870 | 0.1599 | 0.042* | |
| C6 | 0.2980 (4) | 0.26512 (18) | 0.08856 (7) | 0.0291 (4) | |
| C7 | 0.8165 (4) | 0.49823 (19) | 0.13079 (7) | 0.0389 (5) | |
| H7 | 0.7974 | 0.5614 | 0.1033 | 0.047* | |
| C8 | 1.0163 (4) | 0.52284 (19) | 0.17283 (7) | 0.0341 (4) | |
| C9 | 1.1994 (5) | 0.6353 (2) | 0.17481 (8) | 0.0418 (5) | |
| H9 | 1.2066 | 0.7050 | 0.1496 | 0.050* | |
| C10 | 1.3738 (5) | 0.6289 (2) | 0.22076 (9) | 0.0465 (5) | |
| H10 | 1.5107 | 0.6939 | 0.2290 | 0.056* | |
| C11 | 1.3173 (5) | 0.5174 (2) | 0.25090 (8) | 0.0522 (6) | |
| H11 | 1.4113 | 0.4975 | 0.2823 | 0.063* | |
| N1 | 0.0973 (4) | 0.31477 (18) | 0.00000 (6) | 0.0394 (4) | |
| N2 | −0.2778 (4) | −0.06932 (17) | 0.09065 (7) | 0.0414 (4) | |
| N3 | 0.4846 (4) | 0.37052 (17) | 0.08923 (6) | 0.0378 (4) | |
| H1 | 0.483 (5) | 0.426 (2) | 0.0624 (9) | 0.045* | |
| N4 | 0.6631 (3) | 0.38663 (15) | 0.13180 (6) | 0.0321 (4) | |
| O1 | 0.2484 (4) | 0.41150 (16) | −0.00353 (6) | 0.0545 (4) | |
| O2 | −0.0594 (3) | 0.29004 (14) | −0.03604 (5) | 0.0461 (4) | |
| O3 | −0.4272 (3) | −0.08987 (16) | 0.05310 (6) | 0.0526 (4) | |
| O4 | −0.2847 (3) | −0.13710 (15) | 0.12986 (6) | 0.0513 (4) | |
| S1 | 1.05706 (12) | 0.41736 (6) | 0.22559 (2) | 0.04762 (18) |
| C1 | 0.0302 (10) | 0.0438 (10) | 0.0277 (10) | −0.0016 (8) | −0.0096 (8) | −0.0034 (7) |
| C2 | 0.0330 (10) | 0.0410 (10) | 0.0303 (10) | −0.0007 (8) | −0.0046 (8) | −0.0039 (7) |
| C3 | 0.0326 (10) | 0.0290 (8) | 0.0325 (9) | −0.0001 (7) | −0.0024 (8) | −0.0025 (7) |
| C4 | 0.0414 (12) | 0.0417 (10) | 0.0314 (10) | 0.0038 (8) | −0.0038 (9) | 0.0075 (8) |
| C5 | 0.0259 (10) | 0.0463 (10) | 0.0323 (10) | 0.0090 (8) | −0.0035 (8) | −0.0005 (8) |
| C6 | 0.0270 (9) | 0.0339 (8) | 0.0262 (9) | 0.0002 (7) | −0.0004 (7) | −0.0062 (7) |
| C7 | 0.0510 (12) | 0.0394 (10) | 0.0257 (9) | −0.0026 (9) | −0.0057 (8) | −0.0013 (8) |
| C8 | 0.0316 (10) | 0.0353 (9) | 0.0349 (9) | −0.0023 (8) | −0.0025 (8) | −0.0079 (7) |
| C9 | 0.0473 (13) | 0.0361 (9) | 0.0412 (11) | −0.0042 (9) | −0.0073 (9) | −0.0059 (8) |
| C10 | 0.0387 (12) | 0.0416 (10) | 0.0581 (14) | −0.0045 (9) | −0.0105 (10) | −0.0220 (10) |
| C11 | 0.0629 (15) | 0.0558 (13) | 0.0357 (11) | 0.0052 (11) | −0.0222 (11) | −0.0131 (9) |
| N1 | 0.0383 (10) | 0.0452 (9) | 0.0335 (9) | −0.0104 (8) | −0.0120 (8) | −0.0013 (7) |
| N2 | 0.0360 (10) | 0.0421 (9) | 0.0453 (10) | −0.0026 (7) | −0.0074 (8) | 0.0047 (8) |
| N3 | 0.0387 (10) | 0.0443 (9) | 0.0290 (9) | −0.0077 (7) | −0.0126 (7) | −0.0001 (7) |
| N4 | 0.0345 (8) | 0.0344 (8) | 0.0266 (8) | −0.0003 (6) | −0.0087 (7) | −0.0040 (6) |
| O1 | 0.0659 (11) | 0.0525 (9) | 0.0435 (9) | −0.0225 (8) | −0.0163 (8) | 0.0158 (7) |
| O2 | 0.0471 (9) | 0.0505 (8) | 0.0383 (8) | −0.0317 (7) | −0.0222 (7) | 0.0182 (6) |
| O3 | 0.0488 (10) | 0.0534 (9) | 0.0537 (9) | −0.0260 (7) | −0.0185 (8) | −0.0002 (7) |
| O4 | 0.0566 (10) | 0.0451 (8) | 0.0519 (9) | −0.0169 (7) | −0.0008 (8) | 0.0131 (7) |
| S1 | 0.0480 (3) | 0.0553 (3) | 0.0385 (3) | −0.0071 (2) | −0.0093 (2) | 0.0040 (2) |
| C1—C2 | 1.388 (3) | C8—C9 | 1.396 (3) |
| C1—N1 | 1.389 (2) | C8—S1 | 1.692 (2) |
| C1—C6 | 1.417 (2) | C9—C10 | 1.426 (3) |
| C2—C3 | 1.365 (3) | C9—H9 | 0.9300 |
| C2—H2 | 0.9300 | C10—C11 | 1.351 (3) |
| C3—C4 | 1.404 (2) | C10—H10 | 0.9300 |
| C3—N2 | 1.447 (2) | C11—S1 | 1.696 (2) |
| C4—C5 | 1.350 (3) | C11—H11 | 0.9300 |
| C4—H4 | 0.9300 | N1—O1 | 1.188 (2) |
| C5—C6 | 1.406 (3) | N1—O2 | 1.1983 (19) |
| C5—H5 | 0.9300 | N2—O4 | 1.199 (2) |
| C6—N3 | 1.357 (2) | N2—O3 | 1.199 (2) |
| C7—N4 | 1.302 (2) | N3—N4 | 1.377 (2) |
| C7—C8 | 1.442 (2) | N3—H1 | 0.87 (2) |
| C7—H7 | 0.9300 | ||
| C2—C1—N1 | 114.01 (15) | C9—C8—S1 | 112.01 (14) |
| C2—C1—C6 | 121.47 (17) | C7—C8—S1 | 123.66 (14) |
| N1—C1—C6 | 124.40 (17) | C8—C9—C10 | 110.86 (19) |
| C3—C2—C1 | 119.87 (17) | C8—C9—H9 | 124.6 |
| C3—C2—H2 | 120.1 | C10—C9—H9 | 124.6 |
| C1—C2—H2 | 120.1 | C11—C10—C9 | 112.19 (18) |
| C2—C3—C4 | 119.41 (17) | C11—C10—H10 | 123.9 |
| C2—C3—N2 | 119.22 (15) | C9—C10—H10 | 123.9 |
| C4—C3—N2 | 121.36 (16) | C10—C11—S1 | 113.08 (15) |
| C5—C4—C3 | 121.14 (18) | C10—C11—H11 | 123.5 |
| C5—C4—H4 | 119.4 | S1—C11—H11 | 123.5 |
| C3—C4—H4 | 119.4 | O1—N1—O2 | 118.16 (16) |
| C4—C5—C6 | 121.43 (17) | O1—N1—C1 | 117.89 (14) |
| C4—C5—H5 | 119.3 | O2—N1—C1 | 123.94 (16) |
| C6—C5—H5 | 119.3 | O4—N2—O3 | 123.26 (17) |
| N3—C6—C5 | 119.70 (15) | O4—N2—C3 | 117.21 (15) |
| N3—C6—C1 | 123.69 (17) | O3—N2—C3 | 119.53 (16) |
| C5—C6—C1 | 116.55 (17) | C6—N3—N4 | 119.65 (16) |
| N4—C7—C8 | 119.31 (16) | C6—N3—H1 | 117.6 (14) |
| N4—C7—H7 | 120.3 | N4—N3—H1 | 122.8 (14) |
| C8—C7—H7 | 120.3 | C7—N4—N3 | 114.87 (15) |
| C9—C8—C7 | 124.33 (18) | C8—S1—C11 | 91.85 (11) |
| N1—C1—C2—C3 | 180.00 (18) | C8—C9—C10—C11 | −0.6 (3) |
| C6—C1—C2—C3 | −3.8 (3) | C9—C10—C11—S1 | 0.1 (3) |
| C1—C2—C3—C4 | 1.3 (3) | C2—C1—N1—O1 | 177.51 (19) |
| C1—C2—C3—N2 | −178.99 (18) | C6—C1—N1—O1 | 1.5 (3) |
| C2—C3—C4—C5 | 0.6 (3) | C2—C1—N1—O2 | −3.3 (3) |
| N2—C3—C4—C5 | −179.16 (18) | C6—C1—N1—O2 | −179.4 (2) |
| C3—C4—C5—C6 | 0.1 (3) | C2—C3—N2—O4 | −176.10 (19) |
| C4—C5—C6—N3 | −179.66 (19) | C4—C3—N2—O4 | 3.6 (3) |
| C4—C5—C6—C1 | −2.5 (3) | C2—C3—N2—O3 | 3.1 (3) |
| C2—C1—C6—N3 | −178.60 (18) | C4—C3—N2—O3 | −177.21 (19) |
| N1—C1—C6—N3 | −2.8 (3) | C5—C6—N3—N4 | 0.2 (3) |
| C2—C1—C6—C5 | 4.3 (3) | C1—C6—N3—N4 | −176.76 (17) |
| N1—C1—C6—C5 | −179.88 (19) | C8—C7—N4—N3 | −178.20 (17) |
| N4—C7—C8—C9 | 177.13 (19) | C6—N3—N4—C7 | −173.88 (18) |
| N4—C7—C8—S1 | −2.5 (3) | C9—C8—S1—C11 | −0.66 (18) |
| C7—C8—C9—C10 | −178.8 (2) | C7—C8—S1—C11 | 179.01 (19) |
| S1—C8—C9—C10 | 0.8 (2) | C10—C11—S1—C8 | 0.3 (2) |
| H··· | ||||
| N3—H1···O1i | 0.87 (2) | 2.57 (2) | 3.338 (2) | 148.2 (19) |
| N3—H1···O1 | 0.87 (2) | 2.01 (2) | 2.630 (2) | 127.4 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H1⋯O1i | 0.87 (2) | 2.57 (2) | 3.338 (2) | 148.2 (19) |
| N3—H1⋯O1 | 0.87 (2) | 2.01 (2) | 2.630 (2) | 127.4 (19) |
Symmetry code: (i) .