Literature DB >> 21583918

(Z)-6-[(5-Chloro-2-hydroxy-anilino)-methyl-ene]-4-methoxy-cyclo-hexa-2,4-dienone 0.25-hydrate.

Arzu Ozek, Orhan Büyükgüngör, Ciğdem Albayrak, Mustafa Odabaşoğlu.   

Abstract

The title compound, C(14)H(12)ClNO(3)·0.25H(2)O, exists in the keto-amine form, and the aromatic rings are oriented at a dihedral angle of 7.24 (7)°. Bifurcated intra-molecular N-H⋯(O,O) hydrogen bonds result in the formation of planar six- and five-membered rings. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into chains. π-π contacts between benzene rings [centroid-centroid distance = 3.5065 (9) Å] may further stabilize the structure. There also exists a weak C-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21583918      PMCID: PMC2977782          DOI: 10.1107/S160053680901410X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Büyükgüngör et al. (2007 ▶); Hökelek et al. (2004 ▶); Odabaşoğlu et al. (2004 ▶). For related structures, see: Özek et al. (2007 ▶, 2008 ▶); Ersanlı et al. (2003 ▶).

Experimental

Crystal data

C14H12ClNO3·0.25H2O M = 279.95 Monoclinic, a = 21.3670 (11) Å b = 6.7600 (3) Å c = 17.7404 (9) Å β = 103.841 (4)° V = 2488.0 (2) Å3 Z = 8 Mo Kα radiation μ = 0.31 mm−1 T = 100 K 0.68 × 0.54 × 0.41 mm

Data collection

Stoe IPDS-II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.970, T max = 0.970 6976 measured reflections 2588 independent reflections 2352 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.086 S = 1.09 2588 reflections 186 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.31 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-RED32 (Stoe & Cie, 2002 ▶); data reduction: X-RED32; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901410X/hk2658sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901410X/hk2658Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClNO3·0.25H2OF(000) = 1162
Mr = 279.95Dx = 1.495 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6976 reflections
a = 21.3670 (11) Åθ = 2.0–28.0°
b = 6.7600 (3) ŵ = 0.31 mm1
c = 17.7404 (9) ÅT = 100 K
β = 103.841 (4)°Prism, red
V = 2488.0 (2) Å30.68 × 0.54 × 0.41 mm
Z = 8
Stoe IPDS-II diffractometer2588 independent reflections
Radiation source: fine-focus sealed tube2352 reflections with I > 2σ(I)
plane graphiteRint = 0.022
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.0°
ω scansh = −25→26
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −8→7
Tmin = 0.970, Tmax = 0.970l = −22→22
6976 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0376P)2 + 3.3917P] where P = (Fo2 + 2Fc2)/3
2588 reflections(Δ/σ)max = 0.001
186 parametersΔρmax = 0.28 e Å3
2 restraintsΔρmin = −0.31 e Å3
Experimental. 141 frames, detector distance = 100 mm
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.64391 (7)0.8209 (2)0.49336 (8)0.0163 (3)
C20.63352 (7)0.6614 (2)0.43854 (8)0.0171 (3)
C30.58193 (7)0.6836 (2)0.37118 (9)0.0191 (3)
H30.57360.58340.33420.023*
C40.54480 (7)0.8493 (2)0.36036 (8)0.0189 (3)
H40.51120.85930.31620.023*
C50.55578 (7)1.0069 (2)0.41439 (8)0.0175 (3)
C60.60491 (7)0.9945 (2)0.47962 (8)0.0170 (3)
H60.61291.09860.51490.020*
C70.51514 (8)1.3060 (2)0.45380 (9)0.0211 (3)
H7A0.50631.24340.49870.032*
H7B0.48321.40550.43490.032*
H7C0.55701.36630.46750.032*
C80.69160 (7)0.8057 (2)0.56359 (8)0.0164 (3)
H80.69870.91250.59760.020*
C90.77299 (7)0.6029 (2)0.65047 (8)0.0158 (3)
C100.79878 (7)0.4110 (2)0.65524 (9)0.0181 (3)
C110.84717 (7)0.3589 (2)0.71999 (9)0.0201 (3)
H110.86450.23210.72380.024*
C120.86950 (7)0.4950 (2)0.77875 (8)0.0190 (3)
H120.90200.46040.82180.023*
C130.84290 (7)0.6831 (2)0.77270 (8)0.0175 (3)
C140.79444 (7)0.7395 (2)0.70949 (8)0.0172 (3)
H140.77670.86570.70660.021*
Cl10.873014 (18)0.85790 (6)0.84450 (2)0.02270 (12)
N10.72613 (6)0.64456 (19)0.58204 (7)0.0165 (3)
H10.71920.55220.54770.020*
O10.66836 (5)0.50302 (16)0.45048 (6)0.0219 (3)
O20.51359 (5)1.16195 (17)0.39490 (6)0.0229 (3)
O30.77355 (5)0.28754 (18)0.59629 (7)0.0236 (3)
H3A0.7990 (11)0.196 (3)0.5898 (15)0.055 (8)*
O40.50000.3573 (10)0.25000.0253 (14)0.25
H4A0.500 (4)0.286 (5)0.2880 (13)0.03 (2)*0.25
U11U22U33U12U13U23
C10.0144 (7)0.0192 (7)0.0150 (6)−0.0005 (6)0.0028 (5)−0.0001 (6)
C20.0154 (7)0.0190 (7)0.0166 (7)0.0000 (6)0.0033 (5)−0.0010 (6)
C30.0184 (7)0.0226 (8)0.0155 (7)−0.0012 (6)0.0023 (6)−0.0039 (6)
C40.0166 (7)0.0262 (8)0.0127 (7)−0.0004 (6)0.0012 (5)0.0000 (6)
C50.0158 (7)0.0202 (7)0.0167 (7)0.0021 (6)0.0043 (5)0.0017 (6)
C60.0173 (7)0.0187 (7)0.0147 (6)0.0001 (6)0.0037 (5)−0.0016 (5)
C70.0221 (8)0.0180 (7)0.0213 (7)0.0030 (6)0.0017 (6)−0.0009 (6)
C80.0142 (7)0.0192 (7)0.0161 (7)−0.0004 (6)0.0045 (5)−0.0018 (6)
C90.0119 (6)0.0217 (7)0.0139 (6)0.0004 (6)0.0031 (5)0.0008 (6)
C100.0165 (7)0.0194 (7)0.0180 (7)0.0003 (6)0.0031 (6)−0.0021 (6)
C110.0178 (7)0.0196 (7)0.0220 (7)0.0035 (6)0.0030 (6)0.0025 (6)
C120.0153 (7)0.0245 (8)0.0158 (7)0.0016 (6)0.0011 (5)0.0043 (6)
C130.0143 (7)0.0235 (8)0.0146 (7)−0.0019 (6)0.0035 (5)−0.0017 (6)
C140.0158 (7)0.0183 (7)0.0166 (7)0.0018 (6)0.0021 (5)0.0009 (6)
Cl10.0219 (2)0.0258 (2)0.01674 (19)0.00025 (14)−0.00266 (14)−0.00406 (14)
N10.0151 (6)0.0184 (6)0.0142 (6)0.0007 (5)0.0001 (5)−0.0018 (5)
O10.0205 (5)0.0206 (6)0.0221 (5)0.0040 (4)0.0002 (4)−0.0053 (4)
O20.0226 (6)0.0233 (6)0.0189 (5)0.0078 (4)−0.0030 (4)−0.0015 (4)
O30.0206 (6)0.0228 (6)0.0238 (6)0.0049 (5)−0.0016 (4)−0.0077 (5)
O40.036 (4)0.021 (3)0.016 (3)0.000−0.001 (3)0.000
C1—C81.412 (2)C8—H80.9300
C1—C61.426 (2)C9—C141.389 (2)
C1—C21.433 (2)C9—C101.404 (2)
C2—O11.2924 (18)C9—N11.4050 (18)
C2—C31.427 (2)C10—O31.3459 (18)
C3—C41.359 (2)C10—C111.395 (2)
C3—H30.9300C11—C121.387 (2)
C4—C51.415 (2)C11—H110.9300
C4—H40.9300C12—C131.386 (2)
C5—C61.366 (2)C12—H120.9300
C5—O21.3720 (18)C13—C141.385 (2)
C6—H60.9300C13—Cl11.7438 (15)
C7—O21.4229 (19)C14—H140.9300
C7—H7A0.9600N1—H10.8600
C7—H7B0.9600O3—H3A0.852 (17)
C7—H7C0.9600O4—H4A0.831 (19)
C8—N11.3122 (19)
C8—C1—C6118.69 (13)N1—C8—H8119.2
C8—C1—C2120.36 (14)C1—C8—H8119.2
C6—C1—C2120.91 (13)C14—C9—C10120.98 (13)
O1—C2—C3121.57 (14)C14—C9—N1123.82 (13)
O1—C2—C1121.51 (13)C10—C9—N1115.19 (13)
C3—C2—C1116.90 (14)O3—C10—C11124.28 (14)
C4—C3—C2120.85 (14)O3—C10—C9116.60 (13)
C4—C3—H3119.6C11—C10—C9119.10 (14)
C2—C3—H3119.6C12—C11—C10120.35 (14)
C3—C4—C5121.89 (13)C12—C11—H11119.8
C3—C4—H4119.1C10—C11—H11119.8
C5—C4—H4119.1C13—C12—C11119.30 (13)
C6—C5—O2125.86 (14)C13—C12—H12120.3
C6—C5—C4119.79 (14)C11—C12—H12120.3
O2—C5—C4114.34 (12)C14—C13—C12121.88 (14)
C5—C6—C1119.64 (14)C14—C13—Cl1118.58 (12)
C5—C6—H6120.2C12—C13—Cl1119.49 (11)
C1—C6—H6120.2C13—C14—C9118.37 (14)
O2—C7—H7A109.5C13—C14—H14120.8
O2—C7—H7B109.5C9—C14—H14120.8
H7A—C7—H7B109.5C8—N1—C9128.60 (13)
O2—C7—H7C109.5C8—N1—H1115.7
H7A—C7—H7C109.5C9—N1—H1115.7
H7B—C7—H7C109.5C5—O2—C7116.07 (11)
N1—C8—C1121.66 (14)C10—O3—H3A114.0 (18)
C8—C1—C2—O1−2.1 (2)C14—C9—C10—C11−0.7 (2)
C6—C1—C2—O1−179.69 (14)N1—C9—C10—C11177.86 (14)
C8—C1—C2—C3176.39 (14)O3—C10—C11—C12−178.82 (15)
C6—C1—C2—C3−1.2 (2)C9—C10—C11—C12−0.1 (2)
O1—C2—C3—C4178.48 (14)C10—C11—C12—C130.5 (2)
C1—C2—C3—C40.0 (2)C11—C12—C13—C140.0 (2)
C2—C3—C4—C50.6 (2)C11—C12—C13—Cl1−177.44 (12)
C3—C4—C5—C60.0 (2)C12—C13—C14—C9−0.9 (2)
C3—C4—C5—O2−179.47 (14)Cl1—C13—C14—C9176.63 (11)
O2—C5—C6—C1178.19 (14)C10—C9—C14—C131.2 (2)
C4—C5—C6—C1−1.2 (2)N1—C9—C14—C13−177.27 (14)
C8—C1—C6—C5−175.82 (14)C1—C8—N1—C9−176.94 (14)
C2—C1—C6—C51.8 (2)C14—C9—N1—C8−5.5 (2)
C6—C1—C8—N1175.38 (14)C10—C9—N1—C8175.95 (14)
C2—C1—C8—N1−2.3 (2)C6—C5—O2—C7−10.6 (2)
C14—C9—C10—O3178.07 (14)C4—C5—O2—C7168.79 (13)
N1—C9—C10—O3−3.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.861.842.5511 (16)140
N1—H1···O30.862.192.6063 (17)109
C3—H3···O40.932.433.279 (5)151
O4—H4A···O2i0.83 (2)2.03 (2)2.842 (3)166 (6)
O3—H3A···O1ii0.85 (2)1.74 (2)2.5652 (16)162 (3)
C12—H12···O2iii0.932.563.4372 (18)157
C7—H7A···Cg1iv0.962.833.644 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.861.842.5511 (16)140
N1—H1⋯O30.862.192.6063 (17)109
C3—H3⋯O40.932.433.279 (5)151
O4—H4A⋯O2i0.831 (19)2.029 (19)2.842 (3)166 (6)
O3—H3A⋯O1ii0.852 (17)1.743 (18)2.5652 (16)162 (3)
C12—H12⋯O2iii0.932.563.4372 (18)157
C7—H7ACg1iv0.962.833.644 (2)143

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C1–C6 ring.

  6 in total

1.  Three (E)-2-[(bromophenyl)iminomethyl]-4-methoxyphenols.

Authors:  Arzu Ozek; Ciğdem Albayrak; Mustafa Odabaşoğlu; Orhan Büyükgüngör
Journal:  Acta Crystallogr C       Date:  2007-02-17       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,3-Bis[2-(2-hydroxybenzylideneamino)phenoxy]propane.

Authors:  Tuncer Hökelek; Selen Bilge; Semsay Demiriz; Bilgehan Ozgüç; Zeynel Kiliç
Journal:  Acta Crystallogr C       Date:  2004-10-22       Impact factor: 1.172

4.  X-ray and computational structural study of (E)-2-(4-chloro-phenyl-imino-meth-yl)-4-methoxy-phenol.

Authors:  Arzu Ozek; Orhan Büyükgüngör; Ciğdem Albayrak; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

5.  2-[(2-hydroxy-4-nitrophenyl)aminomethylene]cyclohexa-3,5-dien-1(2H)-one.

Authors:  Cem Cüneyt Ersanli; Cigdem Albayrak; Mustafa Odabaşoglu; Ahmet Erdönmez
Journal:  Acta Crystallogr C       Date:  2003-09-23       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.