Literature DB >> 21583780

Bis(μ-2,2'-bi-1H-imidazole-1,1'-di-acet-ato)bis-[diaqua-cobalt(II)] hexa-hydrate.

Tingting Zhang1, Tao Zhang, Feng Xu, Hongze Liang.   

Abstract

The dinuclear title compound, [Co(2)(C(10)H(8)N(4)O(4))(2)(H(2)O)(4)]·6H(2)O, lies about an inversion centre. Each Co(II) atom is six-coordinated by two water mol-ecules, two carboxyl-ate O atoms and two N atoms of two symmetry-related 2,2'-bi-1H-imidazole-1,1'-diacetate (L(2-)) ligands in a slightly distorted octa-hedral geometry. Mol-ecules are linked into a three-dimensional framework via O-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583780      PMCID: PMC2977594          DOI: 10.1107/S1600536809013701

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2,2′-biimidazole derivatives, see: Atencio et al. (2004 ▶); Ghosh et al. (2006 ▶); Tadokoro & Nakasuji (2000 ▶); Zhang & Liang (2009 ▶). For the preparation of the ligand, see: Zhang et al. (2009 ▶).

Experimental

Crystal data

[Co2(C10H8N4O4)2(H2O)4]·6H2O M = 794.43 Monoclinic, a = 15.902 (3) Å b = 14.202 (3) Å c = 14.998 (3) Å β = 110.06 (3)° V = 3181.7 (13) Å3 Z = 4 Mo Kα radiation μ = 1.13 mm−1 T = 295 K 0.50 × 0.42 × 0.18 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.570, T max = 0.813 15337 measured reflections 3625 independent reflections 3151 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.074 S = 1.10 3625 reflections 218 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.29 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013701/sj2607sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013701/sj2607Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co2(C10H8N4O4)2(H2O)4]·6H2OF(000) = 1640
Mr = 794.43Dx = 1.658 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 15337 reflections
a = 15.902 (3) Åθ = 3.1–27.4°
b = 14.202 (3) ŵ = 1.13 mm1
c = 14.998 (3) ÅT = 295 K
β = 110.06 (3)°Block, red
V = 3181.7 (13) Å30.50 × 0.42 × 0.18 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3625 independent reflections
Radiation source: fine-focus sealed tube3151 reflections with I > 2σ(I)
graphiteRint = 0.029
ω scansθmax = 27.4°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −20→19
Tmin = 0.570, Tmax = 0.813k = −18→18
15337 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0275P)2 + 4.2044P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.002
3625 reflectionsΔρmax = 0.41 e Å3
218 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0061 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors base. 0 d on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.023692 (15)0.749865 (14)0.077182 (15)0.01916 (9)
N10.91453 (10)0.82568 (10)0.29571 (10)0.0224 (3)
N20.88351 (10)0.58280 (10)0.21753 (10)0.0243 (3)
N30.88985 (10)0.91865 (10)0.17141 (10)0.0248 (3)
N40.93715 (9)0.67422 (10)0.13078 (9)0.0209 (3)
O20.89286 (9)0.98537 (9)−0.05853 (9)0.0285 (3)
O30.92283 (9)0.84716 (9)0.01511 (9)0.0323 (3)
O41.11054 (11)0.82618 (9)0.02372 (11)0.0389 (4)
H4D1.10430.88250.02950.047*
H4C1.14090.8131−0.01810.047*
O50.96590 (9)0.67292 (9)−0.05502 (9)0.0319 (3)
H5D1.00170.6536−0.07970.038*
H5C0.93040.6160−0.05240.038*
O60.87182 (9)0.64981 (8)0.38539 (9)0.0280 (3)
O70.87743 (10)0.50471 (9)0.44485 (9)0.0344 (3)
O80.19082 (11)0.79054 (12)0.88353 (11)0.0472 (4)
H8C0.25070.79900.89410.057*
H8D0.15750.80730.82300.057*
O90.10278 (12)0.61000 (12)0.88740 (11)0.0501 (4)
H9D0.14440.65860.88430.060*
H9C0.11960.56600.93360.060*
O100.89665 (17)0.84232 (17)0.80245 (13)0.0832 (7)
H10C0.89540.89280.84490.100*
H10D0.91550.79560.85580.100*
C10.95208 (11)0.87378 (11)0.24321 (11)0.0198 (3)
C20.82375 (12)0.83991 (14)0.25327 (13)0.0301 (4)
H2A0.78000.81440.27430.036*
C60.95635 (11)0.62664 (11)0.21149 (11)0.0187 (3)
C70.81313 (12)0.60473 (14)0.13716 (14)0.0324 (4)
H7A0.75410.58500.12180.039*
C30.80770 (13)0.89635 (14)0.17667 (13)0.0317 (4)
H3A0.75210.91610.13570.038*
C80.84668 (12)0.66100 (13)0.08439 (13)0.0282 (4)
H8A0.81370.68680.02580.034*
C40.90598 (15)0.98220 (12)0.10244 (13)0.0312 (4)
H4B0.96271.01400.13240.037*
H4A0.85951.02980.08490.037*
C50.90808 (11)0.93378 (12)0.01265 (12)0.0221 (3)
C90.88299 (15)0.51645 (13)0.29141 (14)0.0329 (4)
H9A0.93700.47860.30800.039*
H9B0.83240.47430.26570.039*
C100.87762 (11)0.56101 (12)0.38158 (12)0.0240 (3)
U11U22U33U12U13U23
Co10.02548 (14)0.01487 (13)0.01840 (13)0.00047 (8)0.00914 (9)0.00001 (8)
N10.0240 (7)0.0230 (7)0.0228 (7)0.0021 (6)0.0112 (6)0.0027 (6)
N20.0274 (7)0.0254 (7)0.0227 (7)−0.0072 (6)0.0119 (6)−0.0030 (6)
N30.0320 (8)0.0233 (7)0.0214 (7)0.0078 (6)0.0119 (6)0.0055 (6)
N40.0218 (7)0.0216 (7)0.0185 (6)−0.0003 (5)0.0058 (5)0.0003 (5)
O20.0384 (7)0.0241 (6)0.0231 (6)−0.0005 (5)0.0105 (5)0.0048 (5)
O30.0421 (8)0.0207 (6)0.0303 (7)0.0092 (5)0.0076 (6)0.0011 (5)
O40.0662 (10)0.0198 (6)0.0475 (8)−0.0039 (6)0.0412 (8)−0.0004 (6)
O50.0413 (8)0.0264 (7)0.0284 (7)−0.0011 (6)0.0125 (6)−0.0068 (5)
O60.0312 (7)0.0204 (6)0.0337 (7)−0.0046 (5)0.0129 (6)−0.0023 (5)
O70.0513 (9)0.0243 (6)0.0302 (7)−0.0067 (6)0.0173 (6)0.0013 (5)
O80.0448 (9)0.0605 (10)0.0420 (8)0.0034 (8)0.0223 (7)0.0040 (8)
O90.0700 (11)0.0437 (9)0.0418 (9)0.0050 (8)0.0260 (8)0.0003 (7)
O100.1034 (17)0.1029 (17)0.0366 (10)0.0215 (14)0.0152 (11)−0.0105 (10)
C10.0246 (9)0.0172 (7)0.0190 (7)0.0025 (6)0.0091 (6)0.0002 (6)
C20.0239 (9)0.0388 (10)0.0316 (9)0.0046 (8)0.0145 (7)0.0050 (8)
C60.0215 (8)0.0153 (7)0.0199 (7)−0.0008 (6)0.0080 (7)−0.0015 (6)
C70.0213 (8)0.0408 (11)0.0335 (10)−0.0072 (8)0.0075 (7)−0.0082 (8)
C30.0264 (9)0.0390 (10)0.0295 (9)0.0116 (8)0.0091 (8)0.0044 (8)
C80.0229 (8)0.0342 (10)0.0237 (8)0.0009 (7)0.0032 (7)−0.0017 (7)
C40.0508 (12)0.0193 (8)0.0260 (9)0.0080 (8)0.0163 (8)0.0070 (7)
C50.0207 (8)0.0219 (8)0.0228 (8)0.0022 (6)0.0062 (6)0.0021 (7)
C90.0479 (12)0.0218 (8)0.0364 (10)−0.0103 (8)0.0241 (9)−0.0018 (8)
C100.0236 (8)0.0228 (8)0.0269 (8)−0.0067 (7)0.0103 (7)−0.0019 (7)
Co1—O32.0796 (13)O6—C101.267 (2)
Co1—N42.1103 (14)O6—Co1i2.1108 (13)
Co1—O6i2.1108 (13)O7—C101.242 (2)
Co1—N1i2.1153 (15)O8—H8C0.9180
Co1—O42.1177 (14)O8—H8D0.9119
Co1—O52.1727 (14)O9—H9D0.9684
N1—C11.329 (2)O9—H9C0.9028
N1—C21.378 (2)O10—H10C0.9636
N1—Co1i2.1153 (15)O10—H10D1.0029
N2—C61.345 (2)C1—C1i1.467 (3)
N2—C71.370 (2)C2—C31.351 (3)
N2—C91.457 (2)C2—H2A0.9300
N3—C11.347 (2)C6—C6i1.470 (3)
N3—C31.373 (2)C7—C81.356 (3)
N3—C41.460 (2)C7—H7A0.9300
N4—C61.327 (2)C3—H3A0.9300
N4—C81.379 (2)C8—H8A0.9300
O2—C51.248 (2)C4—C51.523 (2)
O3—C51.251 (2)C4—H4B0.9700
O4—H4D0.8143C4—H4A0.9700
O4—H4C0.9320C9—C101.522 (3)
O5—H5D0.8252C9—H9A0.9700
O5—H5C0.9945C9—H9B0.9700
O3—Co1—N490.29 (6)H10C—O10—H10D91.9
O3—Co1—O6i169.21 (5)N1—C1—N3111.15 (15)
N4—Co1—O6i96.47 (5)N1—C1—C1i125.05 (16)
O3—Co1—N1i96.53 (6)N3—C1—C1i123.68 (16)
N4—Co1—N1i94.46 (6)C3—C2—N1110.01 (16)
O6i—Co1—N1i91.32 (6)C3—C2—H2A125.0
O3—Co1—O489.63 (6)N1—C2—H2A125.0
N4—Co1—O4179.80 (5)N4—C6—N2111.28 (14)
O6i—Co1—O483.63 (6)N4—C6—C6i125.21 (15)
N1i—Co1—O485.36 (6)N2—C6—C6i123.35 (16)
O3—Co1—O584.59 (6)C8—C7—N2106.34 (16)
N4—Co1—O587.97 (5)C8—C7—H7A126.8
O6i—Co1—O587.26 (6)N2—C7—H7A126.8
N1i—Co1—O5177.31 (5)C2—C3—N3106.24 (16)
O4—Co1—O592.21 (6)C2—C3—H3A126.9
C1—N1—C2105.27 (14)N3—C3—H3A126.9
C1—N1—Co1i129.17 (12)C7—C8—N4109.68 (16)
C2—N1—Co1i125.45 (12)C7—C8—H8A125.2
C6—N2—C7107.33 (15)N4—C8—H8A125.2
C6—N2—C9125.47 (16)N3—C4—C5114.20 (15)
C7—N2—C9126.89 (16)N3—C4—H4B108.7
C1—N3—C3107.32 (14)C5—C4—H4B108.7
C1—N3—C4126.82 (16)N3—C4—H4A108.7
C3—N3—C4125.82 (16)C5—C4—H4A108.7
C6—N4—C8105.35 (14)H4B—C4—H4A107.6
C6—N4—Co1129.08 (11)O2—C5—O3125.60 (16)
C8—N4—Co1125.51 (11)O2—C5—C4115.77 (15)
C5—O3—Co1140.80 (12)O3—C5—C4118.62 (15)
Co1—O4—H4D110.1N2—C9—C10115.06 (15)
Co1—O4—H4C135.1N2—C9—H9A108.5
H4D—O4—H4C112.2C10—C9—H9A108.5
Co1—O5—H5D115.8N2—C9—H9B108.5
Co1—O5—H5C116.2C10—C9—H9B108.5
H5D—O5—H5C103.6H9A—C9—H9B107.5
C10—O6—Co1i128.25 (12)O7—C10—O6125.95 (17)
H8C—O8—H8D110.6O7—C10—C9115.27 (15)
H9D—O9—H9C120.2O6—C10—C9118.76 (15)
D—H···AD—HH···AD···AD—H···A
O4—H4D···O2ii0.811.922.7309 (19)171
O4—H4C···O8iii0.931.932.855 (2)173
O5—H5D···O9iii0.831.942.752 (2)169
O5—H5C···O7iv0.991.902.888 (2)170
O8—H8C···O6v0.922.102.991 (2)162
O8—H8D···O10vi0.911.852.756 (3)173
O9—H9D···O80.972.022.931 (3)157
O9—H9C···O7vi0.902.012.850 (2)155
O10—H10C···O2vii0.961.972.927 (3)174
O10—H10C···O3vii0.962.523.072 (2)116
O10—H10D···O5vii1.002.183.155 (3)165
O10—H10D···O3vii1.002.463.072 (2)119
Table 1

Selected geometric parameters (Å, °)

Co1—O32.0796 (13)
Co1—N42.1103 (14)
Co1—O6i2.1108 (13)
Co1—N1i2.1153 (15)
Co1—O42.1177 (14)
Co1—O52.1727 (14)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4D⋯O2ii0.811.922.7309 (19)171
O4—H4C⋯O8iii0.931.932.855 (2)173
O5—H5D⋯O9iii0.831.942.752 (2)169
O5—H5C⋯O7iv0.991.902.888 (2)170
O8—H8C⋯O6v0.922.102.991 (2)162
O8—H8D⋯O10vi0.911.852.756 (3)173
O9—H9D⋯O80.972.022.931 (3)157
O9—H9C⋯O7vi0.902.012.850 (2)155
O10—H10C⋯O2vii0.961.972.927 (3)174
O10—H10C⋯O3vii0.962.523.072 (2)116
O10—H10D⋯O5vii1.002.183.155 (3)165
O10—H10D⋯O3vii1.002.463.072 (2)119

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Robust hydrogen-bonded self-assemblies from biimidazole complexes. Synthesis and structural characterization of [M(biimidazole)2(OH2)2]2+ (M = Co2+, Ni2+) complexes and carboxylate modules.

Authors:  Reinaldo Atencio; Mirbel Chacón; Teresa González; Alexander Briceño; Giuseppe Agrifoglio; Anibal Sierraalta
Journal:  Dalton Trans       Date:  2004-01-16       Impact factor: 4.390

3.  3,3'-(2,2'-Bi-1H-imidazole-1,1'-diyl)dipropanol.

Authors:  Tao Zhang; Hong-Ze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

4.  2,2'-(2,2'-Biimidazole-1,1'-di-yl)diethanoic acid.

Authors:  Tingting Zhang; Tao Zhang; Yingtao Ren; Hongze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28
  4 in total
  1 in total

1.  Di-tert-butyl 3,3'-(2,2'-bi-1H-imidazole-1,1'-di-yl)dipropanoate.

Authors:  Ke Wang; Yue-Jiao Li; Ting-Ting Zhang; Hong-Ze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13
  1 in total

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