Literature DB >> 21582854

Di-tert-butyl 3,3'-(2,2'-bi-1H-imidazole-1,1'-di-yl)dipropanoate.

Ke Wang1, Yue-Jiao Li, Ting-Ting Zhang, Hong-Ze Liang.   

Abstract

In the title compound, C(20)H(20)N(4)O(4), the complete molecule is generated by a crystallographic centre of symmetry. The conformation is stabilized by two intramolecular C-H⋯N links.

Entities:  

Year:  2009        PMID: 21582854      PMCID: PMC2969301          DOI: 10.1107/S1600536809021369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the background to 2, 2′-biimidazole derivatives, see: Barnett et al. (1999 ▶, 2002 ▶); Liang et al. (2009 ▶); Zhang & Liang (2009 ▶); Zhang, Zhang, Ren et al. (2009 ▶); Zhang, Zhang, Xu et al. (2009 ▶). For the synthesis, see: Barnett et al. (1999 ▶).

Experimental

Crystal data

C20H30N4O4 M = 390.48 Monoclinic, a = 7.0321 (14) Å b = 17.484 (4) Å c = 8.9681 (18) Å β = 100.80 (3)° V = 1083.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.48 × 0.42 × 0.14 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.960, T max = 0.988 9620 measured reflections 2453 independent reflections 1474 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.190 S = 1.02 2453 reflections 128 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.24 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809021369/fb2148sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021369/fb2148Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H30N4O4F(000) = 420
Mr = 390.48Dx = 1.197 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1478 reflections
a = 7.0321 (14) Åθ = 3.0–27.5°
b = 17.484 (4) ŵ = 0.08 mm1
c = 8.9681 (18) ÅT = 295 K
β = 100.80 (3)°Plate, colourless
V = 1083.1 (4) Å30.48 × 0.42 × 0.14 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer2453 independent reflections
Radiation source: fine-focus sealed tube1474 reflections with I > 2σ(I)
graphiteRint = 0.077
Detector resolution: 0 pixels mm-1θmax = 27.5°, θmin = 3.2°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −22→22
Tmin = 0.960, Tmax = 0.988l = −11→10
9620 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: difference Fourier map
wR(F2) = 0.190H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0718P)2 + 0.3943P] where P = (Fo2 + 2Fc2)/3
2453 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.24 e Å3
59 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3460 (3)0.51573 (11)0.30746 (19)0.0410 (5)
N20.6689 (3)0.51901 (13)0.3698 (2)0.0522 (6)
C100.1400 (3)0.50398 (14)0.3101 (3)0.0454 (6)
H10A0.06280.52970.22370.054*
H10B0.10990.52680.40160.054*
O20.2468 (3)0.32667 (12)0.1854 (2)0.0717 (6)
O10.0366 (3)0.40123 (12)0.0365 (2)0.0774 (7)
C90.5051 (3)0.50815 (13)0.4210 (2)0.0415 (6)
C80.1171 (4)0.38275 (15)0.1612 (3)0.0525 (6)
C70.6104 (4)0.53329 (17)0.2169 (3)0.0568 (7)
H7A0.69390.54280.15010.068*
C60.4159 (4)0.53160 (15)0.1774 (2)0.0504 (6)
H6A0.34310.53960.08090.061*
C50.0864 (4)0.41992 (15)0.3056 (3)0.0520 (6)
H5A0.16440.39400.39140.062*
H5B−0.04840.41470.31440.062*
C40.2854 (6)0.2868 (2)0.0492 (4)0.0905 (11)
H4A0.31390.3238−0.02420.109*
H4B0.17240.25770.00270.109*
C30.4524 (6)0.2349 (2)0.0943 (5)0.0958 (12)
H3A0.42390.20050.17220.115*
H3B0.46640.20390.00720.115*
C20.6387 (6)0.2728 (2)0.1520 (5)0.1045 (13)
H2B0.62900.30100.24340.125*
H2C0.66530.30920.07700.125*
C10.8074 (6)0.2163 (3)0.1876 (7)0.1289 (18)
H1A0.92410.24350.22850.193*
H1B0.82290.19040.09620.193*
H1C0.78090.17950.26050.193*
U11U22U33U12U13U23
N10.0380 (10)0.0516 (11)0.0319 (9)0.0030 (9)0.0030 (7)0.0023 (8)
N20.0407 (11)0.0834 (16)0.0336 (10)0.0013 (10)0.0097 (8)0.0031 (10)
C100.0364 (11)0.0564 (15)0.0413 (12)0.0045 (11)0.0017 (9)0.0019 (10)
O20.0728 (13)0.0805 (15)0.0564 (12)0.0151 (11)−0.0018 (9)−0.0074 (10)
O10.0988 (16)0.0791 (15)0.0457 (11)0.0097 (12)−0.0087 (10)0.0001 (9)
C90.0377 (11)0.0553 (14)0.0304 (11)0.0037 (11)0.0033 (8)−0.0010 (9)
C80.0518 (14)0.0532 (15)0.0491 (15)−0.0082 (12)0.0006 (11)0.0019 (11)
C70.0522 (15)0.086 (2)0.0343 (12)−0.0015 (13)0.0134 (10)0.0047 (12)
C60.0539 (14)0.0675 (17)0.0289 (11)0.0016 (12)0.0051 (10)0.0033 (11)
C50.0474 (13)0.0629 (16)0.0444 (13)−0.0046 (12)0.0054 (10)0.0044 (12)
C40.100 (3)0.098 (3)0.069 (2)0.020 (2)0.0058 (18)−0.0199 (19)
C30.097 (3)0.095 (3)0.098 (3)−0.005 (2)0.026 (2)−0.021 (2)
C20.101 (3)0.095 (3)0.115 (3)−0.006 (2)0.013 (2)−0.001 (2)
C10.087 (3)0.101 (3)0.198 (5)0.000 (2)0.025 (3)0.031 (3)
N1—C91.371 (3)C6—H6A0.9300
N1—C61.376 (3)C5—H5A0.9700
N1—C101.468 (3)C5—H5B0.9700
N2—C91.331 (3)C4—C31.480 (5)
N2—C71.378 (3)C4—H4A0.9700
C10—C51.516 (3)C4—H4B0.9700
C10—H10A0.9700C3—C21.473 (5)
C10—H10B0.9700C3—H3A0.9700
O2—C81.329 (3)C3—H3B0.9700
O2—C41.475 (4)C2—C11.531 (5)
O1—C81.199 (3)C2—H2B0.9700
C9—C9i1.460 (4)C2—H2C0.9700
C8—C51.500 (4)C1—H1A0.9600
C7—C61.347 (3)C1—H1B0.9600
C7—H7A0.9300C1—H1C0.9600
C9—N1—C6106.13 (18)C10—C5—H5B109.3
C9—N1—C10130.15 (19)H5A—C5—H5B108.0
C6—N1—C10123.53 (18)O2—C4—C3108.9 (3)
C9—N2—C7104.6 (2)O2—C4—H4A109.9
N1—C10—C5112.1 (2)C3—C4—H4A109.9
N1—C10—H10A109.2O2—C4—H4B109.9
C5—C10—H10A109.2C3—C4—H4B109.9
N1—C10—H10B109.2H4A—C4—H4B108.3
C5—C10—H10B109.2C2—C3—C4115.3 (4)
H10A—C10—H10B107.9C2—C3—H3A108.4
C8—O2—C4116.1 (2)C4—C3—H3A108.4
N2—C9—N1111.59 (19)C2—C3—H3B108.4
N2—C9—C9i124.5 (2)C4—C3—H3B108.4
N1—C9—C9i123.9 (2)H3A—C3—H3B107.5
O1—C8—O2122.7 (3)C3—C2—C1112.7 (4)
O1—C8—C5124.7 (3)C3—C2—H2B109.0
O2—C8—C5112.6 (2)C1—C2—H2B109.0
C6—C7—N2110.9 (2)C3—C2—H2C109.0
C6—C7—H7A124.5C1—C2—H2C109.0
N2—C7—H7A124.5H2B—C2—H2C107.8
C7—C6—N1106.7 (2)C2—C1—H1A109.5
C7—C6—H6A126.6C2—C1—H1B109.5
N1—C6—H6A126.6H1A—C1—H1B109.5
C8—C5—C10111.6 (2)C2—C1—H1C109.5
C8—C5—H5A109.3H1A—C1—H1C109.5
C10—C5—H5A109.3H1B—C1—H1C109.5
C8—C5—H5B109.3
D—H···AD—HH···AD···AD—H···A
C10—H10B···N2i0.972.462.960 (3)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯N2i0.972.462.960 (3)111

Symmetry code: (i) .

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4.  3,3'-(2,2'-Bi-1H-imidazole-1,1'-diyl)dipropanol.

Authors:  Tao Zhang; Hong-Ze Liang
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