Literature DB >> 21582608

2,2'-(2,2'-Biimidazole-1,1'-di-yl)diethanoic acid.

Tingting Zhang1, Tao Zhang, Yingtao Ren, Hongze Liang.   

Abstract

In the title compound, C(10)H(10)N(4)O(4), the two imidazole rings adopt a trans conformation and are inclined to one another at a dihedral angle of 55.64 (4)°. In the crystal structure, mol-ecules are linked by inter-molecular O-H⋯N hydrogen bonds into chains running parallel to [010] and layers are formed from these by inter-molecular C-H⋯O hydrogen bonds. Additional C-H⋯O hydrogen bonds produce a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582608      PMCID: PMC2968835          DOI: 10.1107/S1600536809010897

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of 2,2′-biimidazole ligands in metal complex formation, see: Pereira et al. (2006 ▶); Ion et al. (2007 ▶). For related structures, see: Barnett et al. (1999 ▶, 2002 ▶); Zhang & Liang (2009 ▶). For preparation of the starting material, see: Barnett et al. (1996 ▶).

Experimental

Crystal data

C10H10N4O4 M = 250.22 Orthorhombic, a = 8.4327 (17) Å b = 15.116 (3) Å c = 16.702 (3) Å V = 2129.0 (7) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.51 × 0.27 × 0.2 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.961, T max = 0.978 18907 measured reflections 2436 independent reflections 2159 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.086 S = 1.05 2436 reflections 163 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809010897/sj2599sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010897/sj2599Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N4O4F(000) = 1040
Mr = 250.22Dx = 1.561 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 17425 reflections
a = 8.4327 (17) Åθ = 3.1–27.5°
b = 15.116 (3) ŵ = 0.12 mm1
c = 16.702 (3) ÅT = 295 K
V = 2129.0 (7) Å3Prism, colorless
Z = 80.51 × 0.27 × 0.2 mm
Rigaku R-AXIS RAPID diffractometer2436 independent reflections
Radiation source: fine-focus sealed tube2159 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 0 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −10→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −19→19
Tmin = 0.961, Tmax = 0.978l = −21→21
18907 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0416P)2 + 1.0303P] where P = (Fo2 + 2Fc2)/3
2436 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.09214 (10)0.31447 (5)0.31089 (5)0.01700 (19)
H10.14410.26740.29690.050*
O20.21420 (10)0.38341 (5)0.20945 (5)0.01586 (18)
O40.24120 (10)0.83984 (6)0.49664 (5)0.01865 (19)
N30.11682 (11)0.68000 (6)0.44503 (5)0.0121 (2)
O30.10682 (10)0.91340 (5)0.40169 (5)0.01702 (19)
H100.15960.95750.41890.050*
C50.12876 (13)0.38415 (7)0.26763 (6)0.0124 (2)
N10.11865 (11)0.54801 (6)0.26858 (5)0.0123 (2)
N20.23979 (12)0.67789 (6)0.26608 (5)0.0145 (2)
N40.23766 (12)0.55062 (6)0.44669 (6)0.0148 (2)
C60.18459 (13)0.61528 (7)0.40021 (6)0.0121 (2)
C80.12794 (14)0.65457 (7)0.52369 (6)0.0147 (2)
H70.09160.68570.56810.018*
C100.14467 (13)0.84266 (7)0.44296 (6)0.0127 (2)
C10.18552 (13)0.61380 (7)0.31285 (6)0.0120 (2)
C40.04544 (14)0.46687 (7)0.29809 (7)0.0146 (2)
H3−0.06470.46540.28140.017*
H20.04770.46700.35620.017*
C90.04736 (13)0.76275 (7)0.41703 (7)0.0137 (2)
H9−0.05940.76820.43810.016*
H80.04050.76170.35910.016*
C30.13028 (14)0.57281 (7)0.18970 (6)0.0148 (2)
H40.09410.54130.14550.018*
C70.20265 (14)0.57488 (8)0.52384 (7)0.0159 (2)
H60.22640.54190.56930.019*
C20.20507 (14)0.65256 (8)0.18896 (7)0.0154 (2)
H50.22910.68500.14320.019*
U11U22U33U12U13U23
O10.0212 (4)0.0099 (4)0.0199 (4)0.0007 (3)0.0056 (3)0.0007 (3)
O20.0179 (4)0.0146 (4)0.0151 (4)0.0005 (3)0.0031 (3)−0.0006 (3)
O40.0233 (4)0.0155 (4)0.0172 (4)−0.0035 (3)−0.0063 (3)0.0016 (3)
N30.0147 (4)0.0096 (4)0.0120 (4)0.0001 (4)−0.0002 (3)−0.0005 (3)
O30.0196 (4)0.0103 (4)0.0212 (4)−0.0015 (3)−0.0053 (3)0.0019 (3)
C50.0118 (5)0.0114 (5)0.0140 (5)−0.0021 (4)−0.0025 (4)−0.0014 (4)
N10.0143 (4)0.0092 (4)0.0134 (4)−0.0002 (4)0.0011 (3)−0.0010 (3)
N20.0187 (5)0.0116 (4)0.0131 (5)−0.0011 (4)0.0000 (4)0.0015 (3)
N40.0184 (5)0.0121 (4)0.0138 (4)0.0022 (4)0.0008 (4)0.0017 (3)
C60.0141 (5)0.0092 (5)0.0132 (5)−0.0008 (4)0.0002 (4)0.0000 (4)
C80.0178 (5)0.0154 (5)0.0108 (5)−0.0012 (4)0.0012 (4)0.0001 (4)
C100.0140 (5)0.0118 (5)0.0124 (5)0.0008 (4)0.0023 (4)−0.0009 (4)
C10.0137 (5)0.0087 (5)0.0135 (5)0.0009 (4)0.0001 (4)−0.0004 (4)
C40.0151 (5)0.0102 (5)0.0184 (5)−0.0023 (4)0.0034 (4)−0.0010 (4)
C90.0152 (5)0.0098 (5)0.0160 (5)0.0017 (4)−0.0016 (4)0.0000 (4)
C30.0168 (5)0.0154 (5)0.0122 (5)0.0020 (4)−0.0005 (4)−0.0020 (4)
C70.0198 (5)0.0162 (5)0.0118 (5)−0.0003 (4)0.0007 (4)0.0024 (4)
C20.0191 (5)0.0153 (5)0.0119 (5)0.0007 (4)0.0002 (4)0.0012 (4)
O1—C51.3140 (13)N4—C61.3260 (14)
O1—H10.8677N4—C71.3718 (14)
O2—C51.2098 (14)C6—C11.4592 (15)
O4—C101.2117 (14)C8—C71.3594 (17)
N3—C61.3579 (14)C8—H70.9300
N3—C81.3720 (14)C10—C91.5230 (15)
N3—C91.4583 (13)C4—H30.9700
O3—C101.3116 (13)C4—H20.9700
O3—H100.8513C9—H90.9700
C5—C41.5217 (15)C9—H80.9700
N1—C11.3614 (14)C3—C21.3605 (17)
N1—C31.3733 (14)C3—H40.9300
N1—C41.4589 (14)C7—H60.9300
N2—C11.3259 (14)C2—H50.9300
N2—C21.3752 (14)
C5—O1—H1113.0N2—C1—C6125.43 (10)
C6—N3—C8107.30 (9)N1—C1—C6123.50 (10)
C6—N3—C9127.61 (9)N1—C4—C5112.49 (9)
C8—N3—C9125.08 (9)N1—C4—H3109.1
C10—O3—H10109.5C5—C4—H3109.1
O2—C5—O1125.04 (10)N1—C4—H2109.1
O2—C5—C4123.44 (10)C5—C4—H2109.1
O1—C5—C4111.49 (9)H3—C4—H2107.8
C1—N1—C3106.98 (9)N3—C9—C10111.88 (9)
C1—N1—C4127.30 (9)N3—C9—H9109.2
C3—N1—C4125.72 (9)C10—C9—H9109.2
C1—N2—C2105.96 (9)N3—C9—H8109.2
C6—N4—C7106.27 (9)C10—C9—H8109.2
N4—C6—N3110.50 (10)H9—C9—H8107.9
N4—C6—C1124.91 (10)C2—C3—N1106.48 (9)
N3—C6—C1124.37 (10)C2—C3—H4126.8
C7—C8—N3106.36 (9)N1—C3—H4126.8
C7—C8—H7126.8C8—C7—N4109.57 (10)
N3—C8—H7126.8C8—C7—H6125.2
O4—C10—O3125.52 (10)N4—C7—H6125.2
O4—C10—C9122.99 (10)C3—C2—N2109.69 (10)
O3—C10—C9111.47 (9)C3—C2—H5125.2
N2—C1—N1110.89 (9)N2—C2—H5125.2
D—H···AD—HH···AD···AD—H···A
O1—H1···N2i0.871.752.6137 (13)176
O3—H10···N4ii0.851.722.5666 (13)176
C4—H2···N40.972.543.2234 (17)127
C4—H3···O2iii0.972.243.0675 (16)142
C2—H5···O4iv0.932.483.2286 (16)138
C8—H7···O1v0.932.553.3610 (15)146
C9—H8···N20.972.623.2611 (16)124
C9—H9···O4vi0.972.593.3391 (15)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N2i0.871.752.6137 (13)176
O3—H10⋯N4ii0.851.722.5666 (13)176
C4—H2⋯N40.972.543.2234 (17)127
C4—H3⋯O2iii0.972.243.0675 (16)142
C2—H5⋯O4iv0.932.483.2286 (16)138
C8—H7⋯O1v0.932.553.3610 (15)146
C9—H8⋯N20.972.623.2611 (16)124
C9—H9⋯O4vi0.972.593.3391 (15)135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Biimidazole and bis(amide)bipyridine molybdenum carbonyl complexes as anions receptors.

Authors:  Laura Ion; Dolores Morales; Sonia Nieto; Julio Pérez; Lucía Riera; Víctor Riera; Daniel Miguel; Richard A Kowenicki; Mary McPartlin
Journal:  Inorg Chem       Date:  2007-02-16       Impact factor: 5.165

3.  1,1'-Di(hydrazinocarbonylmethyl)-2,2'-biimidazole monohydrate and 1,1'-di[2-(hydrazinocarbonyl)ethyl]-2,2'-biimidazole.

Authors:  W Mark Barnett; Russell G Baughman; Paula M Secondo; Charles J Hermansen
Journal:  Acta Crystallogr C       Date:  2002-08-21       Impact factor: 1.172

4.  3,3'-(2,2'-Bi-1H-imidazole-1,1'-diyl)dipropanol.

Authors:  Tao Zhang; Hong-Ze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08
  4 in total
  2 in total

1.  Bis(μ-2,2'-bi-1H-imidazole-1,1'-di-acet-ato)bis-[diaqua-cobalt(II)] hexa-hydrate.

Authors:  Tingting Zhang; Tao Zhang; Feng Xu; Hongze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

2.  Di-tert-butyl 3,3'-(2,2'-bi-1H-imidazole-1,1'-di-yl)dipropanoate.

Authors:  Ke Wang; Yue-Jiao Li; Ting-Ting Zhang; Hong-Ze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.